>input_sequence_73905
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-G-GAACCCACTCCCACGCCCACCCCCAACGCGTCCACAGAATCACAGGAGTCGTCCAA--------------GAAAGAA
GCACTCG-----CCATGGCCGGCTGCTGCGTCTTCCTCCGGCGGCCGTCGACCGCGTCCGCCTACCGCCTCGGGTACCAC
TCCCTCGACGGCGACCAGGAGGCCGCCGGCCCGCCCCCGCCCCCGGCGACGGTGACGGTGGTGGTCGGGAAGGAGCGGCG
GGTGTTCGCGGTGGACCAGCTGGTGCTCGACACCTACCCGTTCCGGGTGCTCCTGGAGACGGCGGCCAGGAAGGAGGAGC
GCAGGGGTAAGGCCCTCTTCGTGGACGTGGACGCCATCCTCTTCGAGCACATCCTCTGGCTCGCCGGCTGCCACGACCGC
TCCGCCGTCTCCCTTCTCCAGCCCGACCTCCAGGACATCATCGACTTCTACTCCCAGGACGCCTGAAGACCATCATCTCA
TCACATTCTTTGTTGTTCAGTCTACCCATTCTTTTATTTTTCTTCCTCTTCTT----TTCCAGATGCTAGTGTGCATAAT
GT--------TCAGATCATCTGTTATAAGTTACGACAGTGAGATGAAAAATACTATAGTAAATTATAGAAAGA-------
--ATAAATCTCTTGGTCGCTA-----------------------------------------------------------
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>chr4A_1_TraesCS4A01G017000
ATTATGAACAGGCTTGCAGGCTTTTTTTTTGGCCCCATTGGTTCAGGTGTTTCTCAGATGTTGAGCATGTAGGCTTCCCC
TGCCCCTCGTTTATGTTTTTTTTGTTTTTGTAGCGGGACTAGTCCGGCCGGTCGAATTCGTTTGGCCACCCGGTAAACGT
GTGTACGGATAAGGCCCAGGCGTGACAATAGATCATCATGAAGAAAAGACATACAACGCGGCAGGTACATGGACGTACAA
AAATTCGACTGAAGCTTAATTAAATTTCAGTCGGATGTTAAATAGACAGTCCCATAAAAAATACGAGTGTGTGCAAAAAT
GTGTGGAAGTGTTCAGCTTTTACCGCAAGAAAATACGAAGGTGCTTTGTGGAAAAATGTGTGCCATCACTCATTGACAGA
TAGAGCCCTACACACAGATACGTCTGCATACGCGTTTTATGATCGTATCTGCATGCTTAAATCAAGCTAAGTGACTATAA
TTTCGTATTTTTAAAGTTGTAGCATTAAACTGAACATGTGAAGGCGTGTTATCCGCACCGCGTACTCGGGCGCGCGCGAT
GGCGATGCAACGCGCAACGGGGGCACGTCACAATCGTCACAACCCACGGCCACGCGCTCGGCATCGTCGTGC--------
CCGTGTGGCCGTGACGAACAGCCCACCACTCCGTCCCAGCGC-AAACACCGCGTGTCTCCACAGCCTACACGTCTCGACA
ACC-----------------------------ACTTGACGAGTTATCACGGTGAGCTCTCCAGCCGGCGGGGCCAAGTCA
GAGACGAGATCGACGGAGAAGAGGAA-AAAGGAAGAAGGATAGAGAAACACGGACGAGTGGCGGACAGAGGGAGCTGGTC
CAGGACGCGGC-CCCCGCCTGTCCCTTTCCATGACCCCCTGTCCTGCGCCGCCTGGCCCGGTCCAACGGCTACCCCGAGA
CACCCAGCTCCAACCTCCAACGGCTCGACCCGCCCACGATCCCGTCTCCCAGTATAAACCACCTCGCCGCGCCCT-CCCA
CG-GAACCCACTCCCACGCCCACCCCCAACGCGTCCACAGAATCACAGGAGTCGTCCAA--------------GAAAGAA
GCACTCG-----CCATGGCCGGCTGCTGCGTCTTCCTCCGGCGGCCGTCGACCGCGTCCGCCTACCGCCTCGGGTACCAC
TCCCTCGACGGCGACCAGGAGGCCGCCGGCCCGCCCCCGCCCCCGGCGACGGTGACGGTGGTGGTCGGGAAGGAGCGGCG
GGTGTTCGCGGTGGACCAGCTGGTGCTCGACACCTACCCGTTCCGGGTGCTCCTGGAGACGGCGGCCAGGAAGGAGGAGC
GCAGGGGTAAGGCCCTCTTCGTGGACGTGGACGCCATCCTCTTCGAGCACATCCTCTGGCTCGCCGGCTGCCACGACCGC
TCCGCCGTCTCCCTTCTCCAGCCCGACCTCCAGGACATCATCGACTTCTACTCCCAGGACGCCTGAAGACCATCATCTCA
TCACATTCTTTGTTGTTCAGTCTACCCATTCTTTTATTTTTCTTCCTCTTCTT----TTCCAGATGCTAGTGTGCATAAT
GT--------TCAGATCATCTGTTATAAGTTACGACAGTGAGATGAAAAATACTATAGTAAATTATAGAAAGA-------
--ATAAATCTCTTGGTCGCTACTGAACCTCGATGCATTGCAGCTGTCTTCCTAGTTGCTGGCACGCACGTCCTTCATCTG
AACA--------------TTTTGATCTCCTGTTCTTTTTCC-ATCATCTCCAACGCGTCT--------------------
------------------------GCATGTCACAACGCGCTTACTTGTACTGCTCAC-TTTCACTCGGTCCGGCAAGAAC
ATGTCAACTGTCCACTGCTTGCTCAGAAGCCGGGCCACCATGATA--TATGTTACTCTCTGAAGTCTGAAAA-AATGGTG
AC-ACAACACGTCGAACAGCTTGACCACTTCGCTGCCATGATCTTGGCGATGGAACCATAGTCGCGTTGC--------CG
ACCACGGGACAGCGACATGCCGAGTTTTATAAACCCAGCACGAT------TGGTGGGTGCCTAACGAGACAAAA-----T
GCAGCGCTACTTCCAGGCAAGAACATCCGTTGGTGTGTGTGTGTGCGCACCGGACTCCAGCTTTTTGTTTTTGTTTTTTT
ACCATGCAATGATGCTTAAGGTTGAAGCAATATAGAGATAATCAGGAAGCAAATAACATGAGCATGTGCATACACGTTGG
TTTACTATTGAAGCAGAGAATGGAAAGAATTTTTCAGCATGTTTTGTTTATTTTATTATTTGTTGAAGAAGCACCTAATG
AAAACTTATGAAGCTTCACAAAACTATGTAGGAAGCAAGTAATGAACTGCGTACATAACACAAAGGCACAAATGTCGAAA
GATGATCTTTTATATTTGTTGCATAATATAAAGTTTTTTTATGGGTGCATAATTTAAAGTTTGTACGAATCCATATATGT
TGCACCGCTATTTTCATGTGAAGCAACAAAATTACAAGTAAACTGAAAAACTACTACTGAAGCATAGGCGTGATTCAAGG
GTGCAGTTAGGGCATGTACAATGGTTGATAAGATAGTTTTATCTTAGATCTTGCATGTAATTAAGAGATGACACAAAAAG
ATGTCTACAATGGGTCATTTTTTAGCCTTATCTTCATAACTAGTTATTCCTAAAAACATGGTGA
>chr4D_521
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----------------------------------------AAGCCGTGTTATCCGCCCCGCGTGCTCGGGCGCACGCGAT
GGCGATGCAACGCGCAACGGGGGCACGTCATGATCGTCACAACCCACAGCCACGCGCTCGGCATCGTCGTGCACTCGTGC
CCGTGTGTCCGTGATGAACAGACCACCACTCCGTCCCAGTGCAAAACACCGCGTGTCTCTACAGCCTACACGTCTCGACA
ACTACTTTTTTTTTAGGATCATCTCGGCAACTACTTGACGAGTTATTTTGGTGAGCTCTCCAGCCGGCGGAGCCAAGTCA
GAGACGAAATCGATGGAAAGGGGGAA-AAAG-AAGAAGGATACAAAAACATGGACGAGTGGCGGACAGAGGGAGCTGGTC
CAGGACGCGGCCCCCCGCCTGTCCCTTTCCACCACCCCCTGTCCTGCGCTGCCCGGCCCGGTCCAACGGCTACCCCGAGA
CGGCCAGCTCCAGCCTCCAACGGCTCGACCCGCCCACGATCCCGTCTCCTAGTATAAACCACCTCGCCGCGCCCT-CCCC
AGCGAACCCACTCCCACGCCCAAACCCAACGCGTCCAAAGCAGCAGAGGAGTCCAAGAACCGGAGCACCGAGGAAAGGAA
GCACCATCTCCTCCATGGCCGGCTGCTGCGTCTTCCTCCGGCGGCCGTCGACCTCCTCCGCCTACCGCCTCGGGTACCAC
TCCCTCGACGGCGACCACGAG---GCCGGCCCGCCCCCGGCCCCGGCGTCGGTGACGGTGGTGGTCGGGAAGGAGCGGCG
GGTGTTCGCGGTGGACCAGCTGGTGCTCGACACCTACCCGTTCCGGGTGCTCCTGGAGACGGCGGCCAGGAAGGAGGAGC
GCAGGGGCAAGGCCCTCTTCGTGGACGTCGACGCCATCCTCTTCGAGCACATCCTCTGGCTCGCCGGCTGCCACGACCGC
TCCGCCGTCTCCCTCCTCCAGCCCGACCTCAAGGACATCATCGACTTCTACTCCCAGGACGCCTGAAGACCATCATCTCA
TCACGTTCTTTGTTCTTCAGTCTACCCATTCTTTTATTTTTCTTCTTCTTCTTCTTCTTTGTGATGCTAGTGTGCATAGT
GATCGATGAATCAGATCATCTGTCACAGGTTACGACAGTGAGATGAAAAACACTATAGTAAATTATAGAAAAA-------
--ATAAATCTCTTCGTCGCTACTGAATCTCGATGCATTGCAGCTGTCTTCCTCGTTGCTGGCACGCACGTCCTTCTTCTG
AACA--------------TTGTGATCTCCTGTGCCTTTTCC-ATCACCTCCAACACGTCT--------------------
------------------------GCATGTCACAACGCGCTTACTTGTACTGCTCAC-TTTCACTCGGTCCGGCAAGAAC
ATGTCAATTGTGA---GCTTGCCCGGAAGCCGGGCCATGATATACAGTATATTACTGTCTGAAGTCTGAAAA-AATGATG
ACTACAACACGTCGAACAGCTTGACCACTTCGTTGCCATGATCTTGGCGATGGAACCATCGTCGCGTACTGGCGTTGTCG
ACCACGGGACAGCGACATGCCGAGTTTTATAAACCCAACACAATTGGTGGTGGTGGGTGCCTAACGAGACAAAACAAAAT
GCAGCGCTACTTCCAGGCAAGAACATACGTTGGTGTCAGTGT--------------------------------------
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>chr4B_521
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----------------------------------------AAGCCGCGTTATCCGCGCCGGGTGCTCCGGCGCGCGCGAT
GGCGACGCAACGCGCAACT-GGGCACGTCCCAATCGTCCCAACCCAGAGCCACGCGCTCGGCATCGTCGTGCACTCGTGC
CCGTGTCCATG------------------TCCGTCCCAGTGC-AAACACCGCGTGTCTCTACAACCTACACGTCTCGACA
ACT-----------------------------GCTTGACGAGTTATTATGGTGAGCTCTCCAGCCGGCGGAGCCAAGTCA
GAGACGAAATCAATGGAAAGTTGGAAAAAAG-AAGAAGGATACAAAAACATGGACGAGTGGCGGACAG-GGGAGCGGGTC
CGGGACGCGGC-CCCCGTCTGTCGCTTTCCGTCACCCCCTGTCCTCCGCTGCCTGGCCCGGTCCAACGGCTACCCCGAGA
CAGCCAGCTCCAACCTCCAACGGCTCGACCCGCCCACGATCCCGTCTCCTAGTATAAACCACCTCGCCGCGCCCTCCCCA
CG-GAACCCACTCCCACACCCAAGACCAACGCGTCCAAAGCAGCAGAGGAGTCCAAGAACCAGAGCACCGAGGGAAGGAA
GCGCTATCTCCTCCATGGCCGGCTGCTGCGTCTTCCTCCGGCGGCCGTCGACCTCCTCCGCCCACCGCCTCGGCTACCAC
TCCCTGGACGGCGACCACGAG---GCCGGCCCGCCCCCGG---CGGCGACGGTGACGGTGGTGGTCGGCAAGGAGCGGCG
GGTTTTCGCCGTGGACCAGCTGGTGCTCGACACCTACCCGTTCCGGGTGCTCCTGGAGACGGCGGCGCGGAAGGAGGAGC
GCAGGAGCAAGGCCCTCTTCGTGGACGTCGACGCCATCCTCTTCGAGCACATCCTCTGGCTCGCCGGCTGCCACGATCGC
TCCGCCGTCTCCCTCCTCCAGCCCGACCTCAAGGACATCATCGACTTCTACTCCCAGGACGCCTGAAGACGATCATCTCA
TCACATTC----TTCTTCAGTCGGCCCATTCTTTTATTTTTCTTCTTCTTCTT----TTCCTGATGCTAATGTTCATAAT
GT--------TCAGATCATCTGTTATAAGTTACGACAGTGAAATGGGAAATACTATA---AATTATAGAAATATATATAT
ATATATATCTATTCATCGCTAGTGAATCTCGATGCACCGCAGCTGTCCTTCTAGTTGCTGGCGCGCACGTCCGTCTGAAC
ATTCATTCACTCTTGAGCTTGTGATCTCCTGTTATTTTTCATATCATCTCCAACACGTCTGCATGTACGTGTGCGCGTGC
TTAGTTTAGTAGGCGAGGAGAACAGCATGTCACAACGCGCTTACTTGTACTGGTCACTTTTCACTCGGTCCGGCAAGAAC
ATGTCAATTGCTA---GCTTGCTCAGAAGCCGCGCCACCATGATA--TATATCACTCTCTGGAGTCTGAAAAAAATGATG
GCAATAACACGTCGAACAGCTTGACCATTTCGTCGCCATGATCTTGGCGATGGAACCATCGTCGCGCTGC--------CG
ACCAC-GGACAGCGACATGCCGAGTTTTATAAACCCAGCACCATTGGT------GGGTGCCTAACGAGACAAAACAAAAT
GCAGCGCTACTTCCAGGCCAG-----------------------------------------------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---S------------S------S----------------
-----------------------------------------------S--------------------------------
-------S------S------S-----------------S-------------------S--------------------
--S-------------------------------------------S-S---------------------S---------
-------S-----S---S-S-S---------S----------S-S-----S-----------------------------
--------------------------------S----------------S------------------------------
--S----------------------------------------------S------------------------------
----------------------SS-------------S--S-S--S-------SSSS-------------------S---
-----SS----------------------------------------------S-S------------------------
-----------------S---SSS---------------S----------------------------------------
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-------S--------------------S---------------------------------------------------
--------------S---------------S-------------------------------------------------
--------------S------------------------------S---------------S------------------
-----------------------------------------------------------------------S--------
-------------S------------S------------------------------------------------S----
--------------------S---------------------------------S-------------------------
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-------S---SSSSS----------------------------------S--------------------------S--
--------------------------------S--------------------------S--------------------
-----------------------------------------S--------------------------------------
--------------------------S---------SS----SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_97
-----------------------------------------------------------------------------CCC
TGCCCCTCGTTTATGTT---------------------------------------------------------------
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>reverse_1928
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-------CTGTCCACTGCTTGCTCAGA-----------------------------------------------------
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