>input_sequence_73902
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----------------------------------------CTCTCACGCCCTCCGTCGTCCTCTTCTTCCTCCAGACGAA
GCAATC-ATGGTGAGGCTGGGGCCTCTGGCCGCGCAGCACGCGGGAGCGTTCGCCCGCGACCTGGGGCTGGGAAGCCCCG
CGGCGCTCGTGGCCTTCGCGGTCGTCGCGACGGTGGCGGTGGCGGCCGTGGCGGCCTTCGGCTGCGCCAAGGGGGCCAAG
AAGCCGCGCCGGCAAG---ACAAGAACAACGTCTACTACTACGGCCAGGGGTATCCGCCGCCGCCACCCGCGGGCGCGTA
CGGTTACCCGGCGCAGCAGCCGGCCCCGGGCTACGCGTACCCACCGCCGCCCGCCGACGCTGGGAGGAAGCAGGG---GC
GCATGGGCGGTGGCGCGGGGCTCGCCCTCGGTGCTGGCGCTGGCCTGGCCACCGGCGTCATCGTCGGCTCGGCGCTCAGC
TCCGGGTGCGGAGGAGGCGGCGGGTGCGGTGGTGGCTGCGGTGGCGGATGCGGTGGTGGCTGCGGCGGTTGACCTGGTCG
TA------CGTGTTTCATGGCTTGCGTTGGTGTGCGTACGTAGTGGTTAGACAGTTGGGGCTTTGATAATTGT--AGATA
TACTACTTACTACACTATACAGTATCGCGTGTGA----------------------------------------------
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>chr2A_1_TraesCS2A01G504200
CATATTAGTGGCGCACTGCTATAAAAAAATACTAGTGGCGCATTATCTGTTAGTGCGCCATTAGTAACCCAGAGCACAAG
GTAAATATGGCCCCCTGGGAGGCATACTTATGGCGCACCGTGTGACTTACTAATGGCGCACTGCCTCGTGCGTCACTATA
GTATGGTATACTAATGACGCGTCATTAATATATGTTACTAGTGGCGTGCCAAAACAGATGCGCCACTAATAAGCTTTTTC
CTAATAGTGTTATCTCTTTGCCCATCTCGGCTAAACTGTTCAGTTGTCCTCTGCGCAAAGTTGTTGGCATCCTATGCAAG
CAAGTAGGCGTTTCGGTTCAATGTAACACGAATTTAGGGACCGATCGATATAATTGTGGCCTGTGGGCACCTCGTGCCAA
ACGCCAAAAATATGCACCTTGCCGTGTGCGTCGCTTTTGGCAAGTCATCATGGAAGCCGCGTATGTTCACTGAGGCGAAG
AACACCACAACTCTCCAACCGATCCAATCTCTAGGGAGAAAACACGGTACCTAAAAAATTCTACAGGGTGCGTGGTAGAG
CCCGAGTCGGCATCGTACGGCACTGCTAAGGTTCAAGGGAGGAAAAAGGGTAGACGTGGCAGCTTATGGCATCGTGTAGT
GTGTTTACAGTGTTACGTCCATGACGGTCGCATCGTAGCAGAAAATTACCTCTCCTGTCCCCGCAGATGATTGGATAGGG
GCCTCTTGTATGTACTCAACATATGGCTAAGGCGAAGTTCCGGATTCCCTTGCCCCCGAAGCAACTGGACGTGTATAAAT
GTGCACAGATGCAGGGCACGGTCCGTGCGAGTTCCCCTCTGGTTCTTCCTTGTGAATTGACTGCGAGAGAGAGAGAGAGA
GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATCCGGGAGGAAAATTCCTTGGTCCTTGGTCGGTTGCACCCGTAG
TTCTGCTATAAATACATAGTACCGCCCGCCTAATCAATCGCTCTCACGCCCTCCGTCGTCCTCTTCTTCCTCCAGACGAA
GCAATC-ATGGTGAGGCTGGGGCCTCTGGCCGCGCAGCACGCGGGAGCGTTCGCCCGCGACCTGGGGCTGGGAAGCCCCG
CGGCGCTCGTGGCCTTCGCGGTCGTCGCGACGGTGGCGGTGGCGGCCGTGGCGGCCTTCGGCTGCGCCAAGGGGGCCAAG
AAGCCGCGCCGGCAAG---ACAAGAACAACGTCTACTACTACGGCCAGGGGTATCCGCCGCCGCCACCCGCGGGCGCGTA
CGGTTACCCGGCGCAGCAGCCGGCCCCGGGCTACGCGTACCCACCGCCGCCCGCCGACGCTGGGAGGAAGCAGGG---GC
GCATGGGCGGTGGCGCGGGGCTCGCCCTCGGTGCTGGCGCTGGCCTGGCCACCGGCGTCATCGTCGGCTCGGCGCTCAGC
TCCGGGTGCGGAGGAGGCGGCGGGTGCGGTGGTGGCTGCGGTGGCGGATGCGGTGGTGGCTGCGGCGGTTGACCTGGTCG
TA------CGTGTTTCATGGCTTGCGTTGGTGTGCGTACGTAGTGGTTAGACAGTTGGGGCTTTGATAATTGT--AGATA
TACTACTTACTACACTATACAGTATCGCGTGTGACGATCGGCATATCTCTACGCCCGCTTGTTCG---ATTACTACGTGA
TGAGTATATTGTGAAAGCAGCA--TATGATTTGGGGCGTGCATGGATGCCGTTCTTTTCCATGTA----ACAACTGATGA
TCGACACAT--------ACATGGATATGAAAATGCTGGTTTGGTTGCAGGAGAAGAT--ATCTTTGAGTTGGAAATACTT
CACCCACTCGTGCATTCTTTTTAAATCTGTAAAATCATAGGGCCACACAAGAAAAGTATGCCTATTTGATCTGTCTTTGC
TTTGCAACTAAGAAAGCTTGTTCGTGGCACGAGTAGGAACCCAGCGCTATGTATAGCCCGGGCTCCATTTCGGCTCTACG
AGACAGCGACGTCCTATACATTGGAAAAACAAAAGGTGACGTTCTGGGATAGGCAATGGACCAACGGGGAGATTAAAGGT
GAGGGCAAATGAGACCTTGTGCAGTGAAAAAAACAAAAGAACAATAGCGATTACATGACCATACAGTTCTGGACCTTTTT
TTTTGAGCCGGGGGTTCTGGACTTCTAGGAAGTTGACGATGGCACAAGAAACATTATGGATATATGACCATCTGAGCCCA
GTGTGGACAAATTGTGTATGTATGTCTTGTTGAAGAATTTTTAGAAGTTTTACCAACATAACCAGTTAGATATTTCAATA
TAAGGAAATGCATGCATCCAACTATAGCTAGACGGCTTCTTTTTTACCAAAGAACCCACGTCTATTATAAAAAGCTCACT
GGCAAAATAAAACATTCCCAAGGATAATAAAAATTACATCGAGGTCCATAAACAACGAACGACCTCTACAGCCGGAGTCG
GTCTGGCCTTGTCGATGGCTACCGGGAAGACTTCATGCACGTGCCCCCAAGGACCGCGTCCTGGAGCCGTAATCATCATC
GTTGAATCATTGAATAGAGCCAAAGCATTCTCCAACAGATCGAAACTCTAATATCACTACCCCAAGGAGACGTTGGGAAT
CTACGACATAACT
>chr2B_1011
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--------------------------------------------------CTCCGCCCTCTCCTTCCTCCTCCAGCCGAA
AGCAGCAATGGTGAGGCTGGGGCCTCTGGCCGCGCAGCACGCAGGAGCGTTCGCCCACGACCTGGGGCTGGGGAGCCCCG
CGGCGCTCGTGGCCTTCGCTGTCGTGGCGACGGTGGCGGTGGCCGCCGTGGCCGCCTTCGGCTGCGCCAAGGGGGCCAAG
AAGCCGCACCGGCAGG---ACAACAACAACGTCTACTACTACGGCCAGGGTTACCCGCCGCCGCCTCCCGCCGGGGCGTA
CGGATACCCGGCGCAGCAGCCGCCCCCAGGCTACGCGTACCCGCCGCCGCCCGTCGACGCCGGGAGGAAGCAGGGAGGGC
GCATGGGTGCCGGCGCGGGGCTGGCCCTCGGCGCAGGCGCCGGCCTGGCCACCGGCGTCATCGTCGGCTCGGCGCTCAGC
TCCGGGTGCGGAGGAGGCGGTGGGTGCGGC------------GGCGGTTGCGGTGGCGGCTGCGGCGGTTGACTTGATCG
TACCACGACGTGCTTATCGGCTTGCCTTGGTGTG----CGTAGTGGTTAGACAGTTGGGGCTTTGATAATTGT--AGATA
CTGC---TACTACTATACCG----TCGCGTGTGATGATGGGCGTGACTCTATGTCCACTTGTTTAATTATTACTACGTGA
TGAGTATATTGTGAAAGCAGCA--T--GATTTGGGGCGTGCATGCATGCCGTTCTTTTCCATGTA----ACAAATGATGA
TCAAGAATTCAAGATAGACACGGAAATGAAAATGCTGGTTTGATTGCAGGACAAGATATATCTTTGAGTTG---------
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>chr2D_1017
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--------------------------------------------------------CGCCCTCTCCTTCCTCCAGCCGAA
---AGCAATGGTGAGGTTGGGGCCTCTGGCCGCGCAGCACGCGGGAGGGTTCGCCGACGACCTGAGGCTGGAGAGCCCCG
CGGTGCTCGTGGCCTTCGCGGTCGTGGCGACGGTGGCGGTGGCGGCCGTGGCGGCCTTCGGCTGCGCCAAGGGAGCCAAG
AAGCCGCGCCGGCAGGACAACAACAACAACGTCTACTACTACGGCCAGGGGTACCCGCCGCCGCCTCCCGCCGGGGCGTA
CGGCTACCCGGCGCAGCAGCCGCCCCCGGGCTACGCGTACCCGC---CGCCCGTCGACGCTGGGAGGAAGCAGGGAGGGC
GCATGGGGGCCGGCGCGGGGCTCGCCCTCGGAGCCGGCGCCGGCCTGGCCACCGGCGTCATCGTCGGCTCGGCGCTCAGC
TCCGGGTGCGGAGGCGGAGGTGGGTGCGGC------------GGCGGGTGCGGTGGCGGCTGCGGCGGTTGACTTGATCG
TACCACGAAGTGCTTATCGGCTTGCCTTGGTGTG----CGTAGTGGTTAGGCAGTTGGG-CTTTGATAATTGTATAGATA
CTGC---TACTACAATACTG----TCGCGTGTGATGATGGGCATGACTCTATGTCCACTTGTTTAATTATTACTACGTGA
TGAGTATATTGTGAAAGCAGCATTT--GATTTGGGGCGTGCGTGCATGCCGTTCTTTTCGTTCCATGTAACAAATGATGA
TC------------------------------------------------------------------------------
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>chr2A_1019
TCCTTCC-------------------------------------------------------------------------
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----------------------------------------------------------------TCCTCCTCCAGCCGAA
AGCAGCAATGGTGAGGCTGGGGCCTCTCGCCGCGCAGCACTCGGGAGCGTTCGCCCGCGACCTGGGGCTGGGGAGCCCCG
CGGCGCTCGTGGCCTTCGCGGTCGTCGCGACGGTGGCGGTGGCGGCCGTGGCGGCCTTCGGCTGCGCCAAGGGGGCCAAG
AAGCCGCGCCGGCAGG---ACAACAACAACGTGTACTACTACGGCCAGGGGTACCCACCGCCGCCCCCCGCGGGCGCGTA
CGGCTACCCGGCGCAGCAGCCTCCCCCCGGCTACGCGTACCCGCCGCCGCCCGTCGACGCCGGGAGGAAGCAGGGAGGGC
GCATGGGAGCCGGCGCGGGTCTCGCCCTCGGCGCAGGCGCCGGCCTGGCCACCGGCGTCATCGTCGGCTCGGCGCTCAGC
TCCGGCT------GCGGAGGCGGCTGCGGC------------GGCGGATGCGGTGGCGGCTGCGGCGGTTGACTTGATCG
TACCACGACGTGCTTATCGGCTTGCGTTGGTGTG----CGTAGTGGTTAGGCAGTTGGGGCTTTGATAATTGTATAGATA
CTGC---TACTACTATACCG----TCGCGTGTGATGATCGGCATCCCTCTATGTCCACTTGTTTAATTATTACTACGTGA
TGAGCATATTGTGAAAGCAGCATGT--GATTTGGGGCGTGCATGCATGCCGTTCTTTTCCATGTA-GTAACAAATGATGA
TCAAGAATTCAATATAGACATGGAAATGAAAATGCTGATTTGATTGCGGGACAAGATAT-----TGAGTTGAAAAACTAC
ACC-----------------------------------------------------------------------------
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>SNPs
SSSS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----S-------------------S----
SSS-S-------------------------------------------------------------------S-------
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--------------S--------S-----------------------------S-----------S--------------
---S------------------S-------------------S----------S--------------------------
-------S-SS--------------------S--S-----S---------------------------------------
-----------------------------SSSSSSSSSSSSS--------------S----------------S--S---
------------S--SSS----------------SSSS------------------------------------------
SSSSSSS-------S--SSSSSSS----------S---------SS-----S-S--S------SS---------------
-------------------------SS-----------------S----------------------------S------
--S-S-SS----------------S-----------------S--------S-------------------S---SSSSS
SS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSS
>forward_486
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------------------------------------------------------------------TCACTGAGGCGAAG
AACACC--------------------------------------------------------------------------
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>reverse_1533
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------------TTTCATGGCTTGCGTTGGTG------------------------------------------------
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>forward_1004
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------------------------CCCGCCTAATCAATCGCTCT------------------------------------
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>reverse_1982
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-------------------------------------------------------------GCTCCATTTCGGCTCTACG
A-------------------------------------------------------------------------------
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