>input_sequence_73893
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-------------------------------------------------------------------------ATGCACG
CCCGCCGCCTCCTCCCTCTCCTCCTGCTGCTCGCCGCCGCCGGCCGCTCGCTGGGCCGCGGCGGCATCTTCGGGACTGCA
CCGCCGCCGTCCAGCCCCGGCGGTGGCGACGACGACCAGAAGTGCAGCCGGACGTGCGAGTCCGCGTACTGCACGGGCAC
CTTAGGTACGTACGTCGTCCGTGCTT---GCGGCCGATCGACTGCGATATGCACCGCCA------TCTCTCTGTCTCTCA
--CTCATACCAGAGGGTACGCTTACGTGT-ATCAGAGGCTCCGTTGATGCGGTACGGCAAGTACTGCGGCGTGTCCTACA
CGGGGTGCCCCGGCGAGCCCCCCTGCGACGCCCTCGACGCCTGCTGCATGCTCCACGACGCCTGCATCCAGACCACCGAA
GACTACCTCAACATGTGGTGCAACCAGAGCCTGCTCGACTGCGTGGCCACCGTGAGGACGGCGGCGGCGGCGGCGGGCGG
GGGCGTGGAGGCCGTGCTGACGACGTTCGAGGGGAACCGGTGCAACGCCACGGACGTCGCCGACGAGATCACCTCCATCC
TCGAGGCCGCCGTGTATGCCGGGAGCATCCTGCACAGAGCGCCGGCGCCGGCGCCCGCGCCGTAG---------------
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>chr7B_1_TraesCS7B01G358400
CGTCAGCTCGGGCAAACGGCGGCCGTCGCCCTCCGTTGCACCATACCGCCATGGACCTTGGCGGTAGCGTGTGTAACCCT
ACCGACAGAACCCGTGGCGGTAGCGAAAGGGTCAGATCTCGAAAATTTTCGGAACCGGGGTCAGGTACTGAATTTGTATC
GAAAAAGGGTCAGAGCACGAAATTCGGCCGCCGATCCACACTCATCGATGGTGTCGATTAGGGGCTCCTGCCCATCGAAC
ATGTGGCGGATGACAACACCGCCAACTACGAAATCGATGAGGGCGAGACCGCAAACGTCAAGTTGTTGTGGCCATGAGAG
CCTCCTAGCTAGGCCAACTATGCCTTGGACCTGACCAATGTCCAGTTTCCACCGAACTCATAGA---TCGCGAGTAACAA
GTACCAAGAAGGCTAAAGGGACAATATCATTATGAAGTTAATCCAAAATGACATCCATTCACATGGTCCACCAAAGGGGA
TCGATCACCCTACCTCGCCAAGAGCGTAGTACGAACCAACCATGCCGTTGAGTACGTTGAACTACCAAAACAACCAACCC
GAACAACGGTATATCTTTATTCTGAGGATGCCTGAGCTAGCCTAATCCCCTGGCCTTTTGCTTGTAA-------CAGACA
ATCAGAAGAAGACACGGTTCCTTTCAATAATTCGTTGTCAAAAGAACCGTCTTCTTATCCCAGGTTCAAGAAAAAATAGT
CTTCTTTCATTGCCTTTTGAAGTCACTACTTTTT---TTCCTTTTGCGGG--AAGTTACTGTTGAACACCTGAACTGAAC
TAACCCGTCCAATTTCCCAACGGCGCCACCAAACTGCCACCAAAGCCACTACC-----ACCAACAAACACCACTTCGTTG
AACCTCCAAAACCACCACCACGCTGGCACACTCATGCACGTACTAATCCACGGCCAACAGTTGGAGGCTTAGAGCTAGCT
CTTAGCTCACCACCA-------------TCCTCCTCCTGGCTATCCAGCCAAATCATAATCAGACGGTGAAAAATGCACG
CCCGCCGCCTCCTCCCTCTCCTCCTGCTGCTCGCCGCCGCCGGCCGCTCGCTGGGCCGCGGCGGCATCTTCGGGACTGCA
CCGCCGCCGTCCAGCCCCGGCGGTGGCGACGACGACCAGAAGTGCAGCCGGACGTGCGAGTCCGCGTACTGCACGGGCAC
CTTAGGTACGTACGTCGTCCGTGCTT---GCGGCCGATCGACTGCGATATGCACCGCCA------TCTCTCTGTCTCTCA
--CTCATACCAGAGGGTACGCTTACGTGT-ATCAGAGGCTCCGTTGATGCGGTACGGCAAGTACTGCGGCGTGTCCTACA
CGGGGTGCCCCGGCGAGCCCCCCTGCGACGCCCTCGACGCCTGCTGCATGCTCCACGACGCCTGCATCCAGACCACCGAA
GACTACCTCAACATGTGGTGCAACCAGAGCCTGCTCGACTGCGTGGCCACCGTGAGGACGGCGGCGGCGGCGGCGGGCGG
GGGCGTGGAGGCCGTGCTGACGACGTTCGAGGGGAACCGGTGCAACGCCACGGACGTCGCCGACGAGATCACCTCCATCC
TCGAGGCCGCCGTGTATGCCGGGAGCATCCTGCACAGAGCGCCGGCGCCGGCGCCCGCGCCGTAGCTCCC----------
-TGGCCACTGTTGATGCGCGTTTGATATGGAGTTCT---GAGCAGGTGTGGTCTGGTTGAAGTCG----GTGGCCTAGCA
CCTAAGT-AAAGATGGACCGGTGTCGGCAGAGGGTGGATTATTGATTGAAGGGATTTTTTTTTCTGGTCCTC--ACTACT
C-TCGATCCCCTCTGATTTTTCGGTACTGGGCTCCCTGACGTACGACGTACGTACTGCGGAGTGCAGTTGGGTCACTGAC
ATGTGAGCCAACCAGCTTCCGGGCCCACATGTCAGTGGCTCAACCACACCCTGCAGTACATATCAAACGTGCATCAACAT
GATGTCAGGGGAGCCTCGTTCGATTTTTTGACATCCTCGTGTATGCCCCTATTTC-----TTTGATGGTGTTACGTAAAT
GCGCTTCAGCTCCATTTTCGTCAGGCCAAAGATGTTTGACCGTAATTGAGACAATATGTGGAATGGCTTGTGTAAAAGAG
A---AAGAAAGATTGAAGGCACACATCAAACTGCACTGCATCGTGCCTCCTCTCCCTCCGATCGTTGATCTAGTTCAGCC
GAAACTGCCTCTTGCTCATTGCATCGTGCGCGCGTGGTGGCTTATGAGTTATGAACGGGAATGGGAGAGAATCAGAGCTG
AGGCGTGTAACCAGGGTTAGGCCTTATGAAGAGGAAGGGAGGAATCGGGGAGAATGGGAAGGGAGAGGTAAGCAATGGCG
GAGCTACAGCCAGGCCGGATGGGCCATGACCCGCCCAGCATTTTGAAATTTGTACACACCTTTTTTTTACTGTTGGGCCT
TAGATCACCAGCCACAGGCTATTTCTTCCATTTTGGCCCGCGCAGCCCGCCCAGAGTTGGGCTTCAAGCTCCGCCACTGG
AGGTAAGGCTAAACGTTTCTCAAATGACACACATGTAAGGAGGGGAAACATGTCCACGCATTGCCTCCGTTATGGTCAAT
CGTCTTTGACCTGGTGAAAACATAGCAAAAGTGCATTTATTATGTAACAACACCA
>chr7D_190
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-----------------------------GCCGAGCCACACTCATCAATAGTGTCGATTAGGGGCTCCTGCCAATCGAGC
ATGTGGCGGATGACAACACCGCCAACGACGAAATCGATGAGGACGAGGCCGCAAACCA----TTATTGTGGCCATGGGAG
CCTCCTAGGCCA--CAACTATGCCTTGGACCTGGCCAATGTCCAGTTTCCACCGAACTCCTCGCGAGTCGCGAGTGACAA
GTACCAAAAACGCTAAAGGGACGATATCATTGTGAAGTTTATCCAAAATGACATCCATTCACATGGTCCACCAAAGGGGA
TCGGCCACCCTACCTCACCAAGAGCGTAGTACGAACCAACTAAGCCGTTGAG---------CTAACAAAACAAACAAACA
ACGGTA---TGTGTCTTCTTTCAAAGGATCTCTG----AGCCTAATCTCCTGGCTTTTTGCTTCTAC----TAGCAGGCA
ATCAAAAAGAAGGCAGCT--CTTTCAACAATTCGTTATATCAT-------------------------------------
--------ATTGCCTTTTGAAATCACT---------------------------------GTTGAACACTTAAACT----
-AACCCATCCAATTTCCCAACGGTGACACCAAACTGCCACCAGAG---CTACC-----ACCAACAAACACCACTTCGTTG
AACCTCCAAAACCACCACCACACTGGCACGCTCATGCACGTACTAATCCACGTCCAGC--------------AGCTAGAG
CTTAGCTTAGGTTATCGCCATCCTCCATTCCTCCTTCTGGCCGTCCGACCAAATCATACATACACGGTG-AAAATGCACG
CCGGCCGCCTCCTCCCTCTCCTCCTCCTGCTCGCCGCCGCCGGCCGCTCGTTGGGCCGCGGCGGCATCTTCGGGGCGGCG
CCGCCGCCGTCCAGCCCCGGCGACGG---CGACGACCAGAAGTGCAGCCGGACGTGCGAGTCCGCGTACTGCACCGGCAC
CTTAGGTACGTACGCACGTCGTCTGTTCCGCCGCCGACCGGCCGCGATATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT
--CTCATCTCATACCATGTCTCCGATCCGCACCAGAGGCTCCGCTGATGCGGTACGGCAAGTACTGCGGCGTGTCCTACA
CGGGGTGCCCCGGCGAGCCCCCGTGCGACGCCCTCGACGCCTGCTGCATGCTCCACGACGCCTGCATCCAGACCACCGAC
GACTACCTCAACATGTGGTGCAACCAGAGCCTGCTCGACTGCGTGGCCACCGTGAGGACGGCCGCGGCGGCGGCGGGCGG
GGGCGTGGAGGCCGTGCTGACGACGTTCGACGGGAACAGCTGCAACGCCACGGACGTCGCCGACGAGATCACCTCCATCC
TCGAGGCCGCCGTGTACGCCGGGAGCATCCTGCACAGAGCGCCGGCGCCGGCGCCGGCGAAGTAG----C----------
-TCGCTACTGTTGATGCGCGTTTGATATGGAGGTCCGTGGAGGAGGTGTGGTCCGGTTGAAGTCG----GTGGCCTAGCA
ACCAGTAAAATGGTGGACCGGTGTC--CAGATGGTGGATTATTTATTGAATGGATTTTTGTG--TGGTTCTC--ACTACT
CTTGGATTCCCTCCGGTTTTT-----------------------------------------------------------
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----------------------------TGACATCCTTATTACGGGCTACCCCTGTTCCGTTTAGTGGTGTTACAGA---
----------------------------------------------------AATATGTGGACGGGCTTGTGTAAAAGCA
CGCGAAGAGAGATGGGAGTCACACATAAG-CTGCACTGCATCGTGCCTCCTCTCCCTCCG--------------------
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>chr7A_505
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---------------------------AGTACGAACCAACCATGCCGTTGAGTACGTTCAACTACCAAAACAACCAATCC
GAACAACGGTATATCTTTATTCAGAGGATGCCTG----AGCCTAATCCCCTGGCCTTTTGCTTGTAGGCTGTAGCAGGCA
ATCAGAAGAAGACAC--TTCTTTTCAATAGCTCGTTATCC----------------------------------------
-------CCTGGCCCTTTGAAGTAACTGTTTTTTTCTTTCCTTTTGCGGGGAAAGTCACCGTTGAACACTTAAACT----
-AACCCATCCAATTTCCCAACGGCGCCACCAAACTGCCACCAGAG---CTACTACCATACCAACAAACACCACTTCGCTG
AACCTCCAAAACCACCACCACACTGGCACACTCATA------------CACGGCCAACAGTTGGAGGCTTAGAGCTAGCT
CTTAGCTCACCGCCA-------------TCCTCCTTCTGGCAGCCCGGCCAAATCATAAACACACGGTGAAAAATGCACA
CCGGCCGCCTCCTCCATCTCCTCCTGCTGCTCGCCGCCGCCGGCCGCTCGCTGGCCCGCGGCGGCATCTTCGGGGCAGCG
TCGCCGCCGTCCAGCCCCGACGG---------CGACCAGAAGTGCAGCCGGACGTGCGAGTCCGCGTACTGCACGGGCAC
CTTAGGTACGTACGCCGTCCGTGCCT---GCCGCCGACCGGTTGCGATATGCACCGCCA------TCTCTCTGTATCTCT
CGCTCATACCGGAGGGTACGCATGCTTGT-ACCAGAGGCTCCGCTGATGCGGTACGGCAAGTACTGCGGCGTGTCCTACA
CGGGGTGCCCCGGCGAGCCCCCCTGCGACGCCCTCGACGCCTGCTGCATGCTCCACGACGCCTGCGTCCAGGCCACCGAC
GACTACCTCAACATGTGGTGCAACCAGAGCCTGCTGGACTGCGTGGCCGCCGTGAGGACCGCGGCCGCGGCGGCGGGCGG
CGGCGTGGAGGCCGTGCTGACGACGTTCGAGGGGAACAGCTGCAACGCCACGGACGTCGCCGACGAGATCACCTCCATCC
TCGAGGCCGCCGTGTACGCCGGGAGCATCCTGCGCAGAGCGCCGGCGCCGGCCCCGGCGAAGTAG----CTCGCTTGCTA
GTCGCTACTGTTGATGCGCGTTTGATTTGGAGGTCCGTGGAGGAGGTGTGGTCCGGTTGAAGTCGATCGGTGGCCTAGCA
ACCAGTAAAATGGTGGACCGGTGTC--CAGATGGTGGATTATTTATTGAATGGATTTTTGTG--TGGTTCTACTACTACT
C-TGGATTCCCTCCGGTTTTT-----------------------------------------------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----S-----------S--S----------------------S-----S-
--------------------------S---------------S----S--------SSSSSS--S-----------S---
--------SSSSSS-------------------S-------------------------S-S-S-----------S----
-------S--S-----------S--------S-------S----------------------------------------
---SS-----------S-----------------------------------------S------------------S--
----------------------S-----------SSSS----------------------------S----------S--
----------------S-------------------S--SS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSS--------------------SS---------------------------S--S---------S-S----SSSS
S-----S-----------------------------------S--SSS--------------------------------
---------------------S----------------------------------------------------------
-----------S-----------------------S-----SS---S------------S--S-----------------
--S-----------------------------------------------------------------------S-S--S
-----------------------S--SSS---------------------------------------------------
--------------S---------S------S-----S--S--------------------------------------S
---------------------S-S-S-----S-----------S------------------------------------
-------------------------------------------------------------------------------S
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-------------------------------------S-S----------------------------------------
----------------S--------------------------------------S---SS----SSSS-----------
--S--S--------------------------S--S------S----------S--------------------------
S-S-SSS---S-S------------SS----S-----------S------S--------S-SSS----S-----------
---S---S-----S-S-----SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSS---------SS-SSSS-S-SSSSSS-S--------SS---------SS-SSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----------SS--------------SS
S-------S----S-S--S-------S-SS------------------------------SSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_288
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----------------------------CGAAATCGATGAGGGCGAGA--------------------------------
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>reverse_2360
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---------------------------------------AGGAATCGGGGAGAATGGGA---------------------
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