>input_sequence_73877
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------------------------CTTTTAAAGCCTGTGGAGAAAGACACCTCAACGCACACAAAGTCACCAAATATAGC
ACAAGTTTTTCTTGGAGGTTCTTATCTAGGAGTAGAAACTAGTGAGCGACTAGAGATGTCACTCTTATCACCACCACCAC
CAC---CACCACCATTGTTGGTCACACCATATGGGTCAACAGGAGGTGGTGATTCGTCCGTTTCAATCGACCCTTACGTA
CCATTGATCGTGACTTTGATCATCATTGCCGCCCTCATGGTTGCCTCTTTGGTTTTTGCAAATTTATGTGTTAAGCGTTG
GGCATTCTTCAACAGTTCATATGCTACACAGTCATTCGTGAAGCAAGAATGTGGCATGTGCACTCGTGAGGGCACCATTG
ATGTTGCTTATCCTGTGATGAAGGGTAATGTGGAGAATGTGGCTTCAGAGGAGTTGGTGGAGTCAGATCCACCACAAAAC
GAAGAGGATGACGAGGATGGTTCTTCCGAAGAAGGTTTTTAAGACATCAATTAATCTATGTTTTACTTATCTAGAATTTT
CTAGATATTATGTTATGTTCCCTCGATGCTTTGTTCAAAGAGATTTGGATGTGTTTTGTAAGCTTGATCCTACTGGTCCA
AAGGATA-------------------------------------------------------------------------
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>chr1A_1_TraesCS1A01G260800
GAGCTGCAACCGTCATATGGCAATGCTACAACCGGCGACCGACGATTTGCAACCGATAGAGGGCGATGATACAACAACAA
GCTACAACCGGCATGGGGCCGTGCTACAACCGGCAGCCGGTGAGCTGCAACCGGCATGGGGCGGTGCTACAACCGGAGGC
AGGCGGAGCTACAACCGCCAGTTGCCGTCAATGCTGGAACCAGCGGC-ACAAAATCTATAACCAGCGACACAAAAAGTTG
GAACCAGCCAGGGCATTTATTGCGACAGTGGAGAATGGGTTGTGTTGTCGCCGCGATTTTCCTGGAATCAACGACACAAA
AAAGTTGCGATAGGGTGGATAAGAAGCTATAATCGAGGAATAACGGCGACACGCGTGATCAACGACACAACACTGCAACC
TGGAGGCACAA--ATTTTTGCCTCGACCCGGCAATGGGTTGCACTGTGATGCGACAGCAAGGGATGCTAGAGACA---AA
CGAGGGCGACAACGACAGGGGGAGGGGGTGCGAGCTGCTACCGGCGGGGCGTCAGGGGTGCTA-----------------
------------------ACAATGTGGGGCAC-------GGGTAGCCGCGCGGCTACCAGCCGAAAATTACACAGTTGGT
TCCACTAAAAAGGATCCAACACTTTGAAATCTAATAAAGAGAGGCCATATGAGAGCATGCGTGATCCAATGATAACAATA
TACTTTCTACCAATCTAAAGCAGAGCAAAAGCTTGAAGATATACATTTGGCCAGCTAGGCGACATGCTTTTATTTGGAAG
GTTGTGCATATTTCTCATGATAAACTTGAGAAAAGAAAGGTGTACACTCTAAAAGATATAGATTCGAGCTGTAACTGACT
CTATATAGGAACTCTTAGTGTCCTCTTTTTAAAAGTTTGCAACTGAGTGCTATGAGACAATTTACATCACTTCTCAAACG
GCACGTAAAGTGAAAAGTGGGTGAC----------------AATGGCCTAGGAAAATTTTCTAACAAACATGTTATTAAA
AGTCCTATTTTGCCCCTATGTCTCCTTTTAAAGCCTGTGGAGAAAGACACCTCAACGCACACAAAGTCACCAAATATAGC
ACAAGTTTTTCTTGGAGGTTCTTATCTAGGAGTAGAAACTAGTGAGCGACTAGAGATGTCACTCTTATCACCACCACCAC
CAC---CACCACCATTGTTGGTCACACCATATGGGTCAACAGGAGGTGGTGATTCGTCCGTTTCAATCGACCCTTACGTA
CCATTGATCGTGACTTTGATCATCATTGCCGCCCTCATGGTTGCCTCTTTGGTTTTTGCAAATTTATGTGTTAAGCGTTG
GGCATTCTTCAACAGTTCATATGCTACACAGTCATTCGTGAAGCAAGAATGTGGCATGTGCACTCGTGAGGGCACCATTG
ATGTTGCTTATCCTGTGATGAAGGGTAATGTGGAGAATGTGGCTTCAGAGGAGTTGGTGGAGTCAGATCCACCACAAAAC
GAAGAGGATGACGAGGATGGTTCTTCCGAAGAAGGTTTTTAAGACATCAATTAATCTATGTTTTACTTATCTAGAATTTT
CTAGATATTATGTTATGTTCCCTCGATGCTTTGTTCAAAGAGATTTGGATGTGTTTTGTAAGCTTGATCCTACTGGTCCA
AAGGATAATAAATAATATGCATCTCTTAGATTGCTGTTATGTATATACAGATCTCACTATTGTTTAGGTTTTGGTGTTTT
TCAGCTCTTGTAGTTTTAGTTCATGTATTGGTCGGTTTATTATTCGGTGTGAGCTTCGCGCCATTTTTTCACGCTTGCCG
TGAAACTTGAACAACCAAACAAACACCAGAAATAAGTTTGAACCGTTCATGCACATAAGCCTTACCAAAAAATTATTGCT
CTTGCATTTTAATCTGCACGTCCTTCAAAATTAGAGATCATTTTAATCGAGTTCAAAAAAAAGGGAGATCTTTTTAATTG
GTACTATGTAAGCAACACATTTTGGCAATTCGAACTCATTTGTATGTATTGAAAATTTTGGCACCCATTTAGCAAGTCTT
AGCTTGCTTCTACCGTGCTAAAAAGCTAGCATTTCACTAATTTATGCCACTTTTCCTGAAAAAATATGTCACTTAATCTG
TACATTTCTACTGCATTGTTCATGCATGTGAACATGTATGTTTTTGGCAGTTATAGATTCTGTTGTGTGTCTTCAGCAAG
TGCCGGTGCCTGAACTTTTTTTTTAGATTCGGCAACCTTTATTAAACAATAATCATAGCAGTTACAAGGAAGGGGAGTAA
GAAATCAGGAGGTTTATCTCGCCACTCTCTAGAAAAATTTCCTCTGTAACTAGCCCAAGCAAGCCCATGCGCTGCTGCAT
TACCTTCCCGAGCACAATGAACAATAGTGCCGGTGCCTGAACCTTTATTCGCCGCTTGACACAAGAGGAACATATAACAT
GCAAAAAAGCAAGCAAAGTATATAACCCGCATACTCATGTGAGTTAAGATACAGACGACAAAAAAACACACAATTTTCAC
ATAAAGAAACAAGAAAATTTTAGGATTATCTCCATTAGTATTACCTCTTGTAAGGTAAGAGTATCTACAACCGGTGTCCT
CAAATCCTCCTTAAACGTTCACGGACGCGCCTAGTCAGTGACCTGAT
>chr1D_1
GAGCTGCAACCGTCATAGGGCGATGCTACAACCGGCGGTCGACGAGTTGCAACCGACAGAGGGCGATGATACAACAACAA
GCTGCAGCATGCATGGGGCCATGCTACAACCGGCAGCCGGCGAGCTGCAACCGAGATGGGGCGGTGCTACAACCGGAGGC
CGGTGGGGCTGCAACCGCCAGTTGCCGTCAATGCTGGAACAAGCGGC-GCAAAATCTATAACCAGCGACACAAAAGGCTA
GAACCAGCTAGGGCATTTATTGTGACAGTGGAGAATGGGTTGTGTTGTCGCCGCGATTTTCCTGGATCGATG-ACAC-AA
AAAGTTGCGATGGGGTGGATAGGAAGCTGTAATCGACAAACAACGGCAACACGCGTGACCAAGGACACAACGCTGCAACC
TGGAGGCACAA--TTTTTTTCCTCGACCCGGCAATGGGATGCACTGTGATGCGACAGCAAGGGATGCTAGAGACA---AA
CGAGGGCGACGGCGACAG-----GGGGGTGCGAGCTGCTACCGGCGGGGCGTCAGGGGTGCTAGCATGAGGAAGGAGACG
AATTTGTGGGGAGATCTAACAATGTGAGGCACTTGAATTGGGTAGCCGCGCGGCGAACGGACGAAAATTATACAGTTGGC
TCCACTAAAACGGATCCACCACTTTGAAATCTAATAAAGAGAGGCCATATGAGAGCATGCGTGATCCAATGATAATAATA
TTCTTTTTACCAATGTAAAGCAGAGCAAAAGCTTGAAGATAAACATTTGGCCAGCTAGGCGACATGCTTTTATTTGGAAG
GTTGTGCATATTTCTCATGATAAACTTGAGAAAAGAAAGATATACACTCTAAAAGATATAGATTCGAGCTGTAACTGTCT
CTATATAGGAACTCTTAGTGTCCTCTTTTTAAAAGTTTGCAACTGAATGCTATGAGACAATCTACACCACTTCCCAAACG
GCACGTAAAGCGAAAAGTGGGTGACGTGAAATGCATGCAGCAATGGCCTAGGAAATTTTTCTAACAAACATGTTATTAAA
AGTCCTATTTTGCCCCTATGTCTCCTTTTAAAGCCTGTGGAGAAAGACACCTCAACGCACACAAAGTCACCAAATATAGC
ACAAGTTTTCCTTGGAGGTTCTTATCTAGGAGTAGAAACTAGTGAGCGACTAGAGATGTCACTCTTATCAT------CAC
CAC---CACCACCATTGTTGGTTACACCATATAGGTCAACAGGAGGCGGTGATTCGGCCGTTTCAATCGATCCTTACGTA
CCATTGATCGTGACTTTGATCATCATTGCAGCCCTCATGGTTGCCTCTTTGGTTTTTGCAAATTTATGTGTTAAGCGTTG
GGCATTCTTCAACAGTTCATATGCTACACAGTCGTTCGTGAAGCAAGAATGTGGCATGTGCACTCGTGAGGGCACCATTG
ATGTTGCTTATCCTGTGAAGAAGAGTAATGTGGAGAATGTGGCTTCAGAGGAGTTGGTGGAGTCAGATCCACCACAAAAC
GAAGAGGATGACGAGGATGGTTCTTCCGGAGAAGGTTTTTAAGACATCAATCTATCTATGTTTTACTTATCTAGAATTTT
CTAGATATTATGTTATGTTCTCTCAATGCTTTGTTCAAAGAGATTTGGATGTGTTATGTAAGCTTGATCCTAGTGATCCA
AAGGATAATAAATAATATGCACCTCTTAGATTGCTGTTATGTATATACAGATCTCACTATTGTTTAGGTTTTGGTGTTTT
TCAGCTCTTGTAGTTTTAGTTCATGTATTGGTTGGTTCATTATTCGGTGTGAGCTTCGCGCCATTTTTTCACGCTTGCCG
TGAGACTTGAACAACCAAACAAACACTAGAAATAAGTTTGAATCGTTCATGCACATAAACCTTACCAAAAAATTATTGCT
CTTGCATTTTAATCTGCACATCCTTCAAAATTAGAGAT-------------------------------CTTTCTAATTG
GCACTATGTAAGCAACACATTTTGGCACTTTGCACTCATTTGTATGTATTG-AAATTTTGGCACCCATTTAGCAACTCTT
AGCTTGCTTGTACCGTGCTAAAAAGCTAGCATTTCACTAATTTATGCCACTTTTCCTGAAAAAATATGTCACTTAATCTG
TACATTTCTACTGCATTGTTCATGCATGTGAACATGTAATTTTTTGGCAGTTATAGATTCTCTCGT-TGTTTTTGGCA--
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-------------------------AGTGCCGATGCGTGAACCTTTATTCGCCACTTGACACAAGACGAACATATATCAT
GCAAAACAGCAATCAGAGTATATAACCCGCATACTCATGTGAGTTAAGATACGGACGACAAAAAAGCACAG--TTTTCAC
ATAAAGAAACGAGAAAATTTTAGGATTATCTCCATCACTATTATCTCTTGTAAGGTAAGAGCATCTACAGCCGGCCTCCT
CAAATCCTCCTTAAACATTCGCGGACGCGTCTAGTCAGTGACCGGAT
>chr1B_1
GAGCTGCAACCGTCATAGGG-GATGCTACAACCGGCGACCGATGAGTTGCAACCGACAGAGGGCGATGATACAACAACAA
GCTGCAACCGGCATGAGGCCGTGCTACAACCGGCAGCCGGCGAGCTGTAACCGGCATGGGACGGTGCTACAACCGGAGGC
CGGCGGAGCTGCAACTGCCAGTTGCCGTCAATGCTGGAACCAGCAGCGGCAAAATCTATAATCAGCAGCACAAAAAGCTG
GAACCAACCAGGGCATTTATTGCGACGATGGAGAATGGGTTGTGTTGTGGTCGTGATTTTCCTGGAATCGACAACAC-AA
AAAGTTGCGATTGTGTGGATAGGAAGCTGTAATTGACGAACAACGGCGACACGCGTGACTAGCGACACAACGCTGCAACC
TGGAGGCACCAATTTTTTTGCCTCGACCCGGCAATAGGTTGCACTGTGACCCGGCAATGGTTTGCACTGTGATCCGGCAA
CGAGGGCGACGGCGGTGGGGGA--GGGGTGCGAGCTGCTACCGGTGGGGCGTCAGGGGTGCTAGCATGAGGAAGGAGACG
GATTTGTGGGGAGATCTAACAATGTGGGGCACTTGAATC-GGTAGCCGTGCGGCAACCGGCCGAAAATTATACAGTTGGT
TCCACTAAAAAGGATCCAACACTTTGAAATCTAATAAAGAGAGGCCATATGAGAGCATGCGTGATCCAATGATAACAATT
TTCTTTCTACCAATCTAAAGCAGAGCAAAAGCTTGAAGATAAACATTTGGCCAGCTAGGCGACATGCTTTTATTTGGAAG
GTTGTGCATATTTCTCATGATAAACTTGAGAAAAGAAAGATGTACACTCTAAAAGATATAGATTCGAGCTGTAACTGTCT
CTATATAGAAACTCTTAGTGTCCTCTTTTAAAAGGTTTGCAACTGAATGCTACGAGACAATCTGCATCACTTCTCAAACG
GCACGTAAAGCGAAAAGTGTGTGACGTGAAATGCATGCAGCAACGGCCTAGGAAAATTTTCTAACAAACATGTTATTAAA
AGTCCTATTTTGCCCCTATGTCTCCTTTTAAAGCCTCTGGAGAAAGACACCTCAACGCACAAAAAGTCACCAAATATAGC
ACAAATTTTTCTTGGAGGTTCTTATCTAGGAGTAGAAACTAGTGAGCGGCTAGAGATGTCACTCTTCTCACCACCACCAC
CACCACCACCACCATTGTTGGTCACACCATATGGGTCAAGAGGAGGCAGTGATTCGTCCGTTTCAATCGATCCTTACGTA
CCATTGATCGTGACTTTGATCATCATTGCAGCCCTCATGGTTGCCTCTTTGGCTTTTGCAAATTTATGTGTTAAGCGTTG
GGCATTCTTCAACAGTTCATATGGTACACAGTCATTCGTGAAGCAAGAATGTGGCATGTGCACTCGTGAGGGCACCATTG
ATGTTGCTTATCCTGTGAAGAAGGGTAATGTGGAGAATGCAACTTTAGAGGAGTTGGTGGAGTCAGATCCACCACAAAAC
GAAGAGGATGACGAGGATGGTTCTTCCGAAGAAGGTTTTTAAGACATCAATCAATCTATGTTTTACTTATCTAGAATTTT
CTAGATATTATGTTATGTTCCCTCGATGCTTTGTTCAAAGAGATTTGGATGTGTTTTGAAAGCTTGATCCTAGTGGTCCA
AAGGATAATAAATAATATGCATCTCTTAGATTGTTGTTATGTATATACAGATCTCACTATTGTT----------------
----------TAGTTTTCGTTCATGTATTGGTCGGTTCATTATTCGGTGTGAGCTTCGCGCCATTTTTTCACGCTTGCCT
TGAGACTTGAACAACCAAACACACACCAGAAATAAGTTTGAACCGTTCATGCACATAAGCCTTACCCAAAAATTATTGCT
CACGT-------------CGTCCTTCAAAATTAGAGAT-------------------------------GTTTTTAATCG
GCATTATGTAAGCAACATATTTTGGCACTTTACACCCATTTGTATGTACTG-AAATTTTGGCACCCATTTAGCAAGTCTT
AGCTTGCTTCCACAATGCTAAAAGTCTAGCATTTCACTAATTTATGCCACTTTTCCTGAAAAAGTATTTCATTTAATTTG
TACATTTCTACTGTATTGTTCATGCATGTGCACATGC-ATTTTTTGGCAACTGTAGATTCTCTTGTGTGTCTTCAGCA--
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-------------------------AGTGCCGGTGGGTGAACCTTTATTT------------------------------
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>SNPs
-----------------S---S-----------------------S----------S-----------------------
---S------------------------------------S---------------------------------------
S---------S-------------------------------------S----------------------------S--
------------------------------------------------------------------------S----S--
-----------S---------S------S-------S---S-----------------S------------S--------
-------------S------------------------------------------------------------------
----------SS---------SS---------------------------------------------------------
------------------------------------------------------S---S-----------S---------
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-S---------------------------------------S--------------------------------------
---------------------------------------S-------------------------------------S--
----------------------------------------------S--------------S------------------
----------S---------------------------------------------------------------------
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----------------------------------------------S-----------------------S---------
-----------------------------S--------------------------------------------------
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------------------S-------------------------------------------------------------
---------------------------------------------------S----------------------------
------------------------------------------------------------------------S-------
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-------------------------------------S------------------------------------------
---S----------------------------------------------------------------------------
--------------------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----------
-S-------------------------S--S-S------------------S----------------------------
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--------------------------------------SS---------------------S----------------SS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSS-----------S----------------S------------S---------S---
------S-----S--S------------------------------------S------------S----SSS-------
----------S------------------------S-S-----S-----------------S-------S----SS----
----------------S---S--------S-------------S---
>forward_492
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------------------------------------------------------------------------GAGACAAA
CGAGGGCGACAA--------------------------------------------------------------------
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>reverse_2367
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----------------------------------------------TAACTAGCCCAAGCAAGCCC--------------
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