>input_sequence_73862
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------------------------------------------------CCCCATGGGCATTCGATTGCACGACATATAAT
GCAAATAGAACGGCCAAGAGCTAAAATCATGAGCAGCA---GGGTGGATGAGTCGGAGCTAAGGAAGGTCTTCCAGATGT
TCGACAAGAATGGTGACGGCCAGATCACCAAGAAGGAGCTAGGTGAGTTGCTCAAGAACCTAGGGATCTACATCGCGGAC
GACGAGATGGACGCAACCATGGCCAAGATTGATACCAACGGTGATGGCTGCATCGACGTCGAGGAGTTCGGCCTACTATA
TCGCTCCATCCTCGATGAAGGCGATGGGCCTAACGGTGGCAACATGGGCGACGAGGAGGAGGAGATGAGGGAGGCGTTCG
GTGTCTTCGACCAGAACGGTGACGGCTACATCACCATTGAAGAGCTGCGGTCCGTGCTGGCAAGCCTCGGCCTCAAGCAG
GGTCGCACCGTTGAGGAATGCCGCCAGATGATCAACAAGGTCGACGCCAATGGCGACGGCCGCGTCGACTTCAAGGAGTT
CAGCCAGATGATGCGCGGTGGCGCGGCCAATCGTGAGGATTGACTTTATTGCATGGGAATGGTTCATTGTGGTACTATTG
GTAGTTGTAGATAATTAATTGACTTTAACATG------------------------------------------------
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>chr7A_1_TraesCS7A01G050500
AAAAAACATATTCAACAGATTTGTGGATAATAAAATGATATTTCATGAAGAAGCATAAAGAAATATAAGATTCCCATATA
TTTTGTAAATTGTGTATTTTCAACGCACCTCCCAATCTGTTACAAGTAAACATAGATTCCCAGAAATTATGTAATTTTAA
AATTTTAGATCGTTAGAGGAAAATGTATATAAAACGAACTTCACATTTGCAACTATGTGGACCAGCAATACCGCCTTCAT
ATTCATGTCAAATAAATAACTTAGTTGAAAATTATGAGAAATGGGACGACCAAAAGGGAAAAATTCATGCAAACCATCTA
ATCACAACTTCATCAAACAATTGTAATCCTATTTTCCCGGGATCATTGAACAAAATTACATGTTTATAACATTATTATTC
TTCCCTTAAACTTTACTTCTTCAGTTTCATAAGTCATAAATAGTAAACATTAGCTAGCCCGTGCTGGGGCACGGGTTGAT
GACTAGTTAACATAATTGATATTGAACTTTTAAAGTTAATGTGGCCCTGTTGCAACGCACGGGCGTTCTTCTAGTATGTA
TATATGTGCACTTGAAATTTAAGTACAACTGTACAAGTCACTTGGGTTTTGCTTATTTGGTAAGTTTAAGGCAATATTTG
TCGCAACACAATCATCATACACATTGTAAATTATAATGATACTTTGAGTTTTTTCACTATGCTTTGATTAATATCTCTAT
TTCTATAT-------TTTGAGGCAAGGCACGGGCATTCAACTAGTTTTGAGGTAAGAGACTAAACCTTGTCTTTTTTTAG
ACAAAAGAGATAAGAAATAGACAAAAAGGTGTGCATTCAATGTCCAGAATAGTTAGTATGGCCAAAAAAAGAACTAAGCC
ACACCTTAATTCCATCTCTCTTCTCTTGGCAAAGAGGCACCGCTATTCCCTCCACACCACACAGCCTATTCTCCTCGAAA
ACAAAACCAATCACCGACTACTTCGCCAACGTCGTTTCCAACATTAA-CCCCATGGGCATTCGATTGCACGACATATAAT
GCAAATAGAACGGCCAAGAGCTAAAATCATGAGCAGCA---GGGTGGATGAGTCGGAGCTAAGGAAGGTCTTCCAGATGT
TCGACAAGAATGGTGACGGCCAGATCACCAAGAAGGAGCTAGGTGAGTTGCTCAAGAACCTAGGGATCTACATCGCGGAC
GACGAGATGGACGCAACCATGGCCAAGATTGATACCAACGGTGATGGCTGCATCGACGTCGAGGAGTTCGGCCTACTATA
TCGCTCCATCCTCGATGAAGGCGATGGGCCTAACGGTGGCAACATGGGCGACGAGGAGGAGGAGATGAGGGAGGCGTTCG
GTGTCTTCGACCAGAACGGTGACGGCTACATCACCATTGAAGAGCTGCGGTCCGTGCTGGCAAGCCTCGGCCTCAAGCAG
GGTCGCACCGTTGAGGAATGCCGCCAGATGATCAACAAGGTCGACGCCAATGGCGACGGCCGCGTCGACTTCAAGGAGTT
CAGCCAGATGATGCGCGGTGGCGCGGCCAATCGTGAGGATTGACTTTATTGCATGGGAATGGTTCATTGTGGTACTATTG
GTAGTTGTAGATAATTAATTGACTTTAACATGCCAATGATTCAATGTGGATTGTATAC----ATAAATACAAATACATGA
-GTATGAAACGACCAATTCCTCTCTTTTAAAAAGACGGGTGAGGCTGCCTTCGTCCATGTTTTCATTTTTTTGGCTGGAT
TGGATTCATTATACGCTGTAAATGGTATTTATCATGGAAAACGCTAGGGTGAAGAAGCAAGTATTCCCCCTATCCACTCC
TTTGACGATCATGTAGGCAGCAGGGGAGGCAACGCGCCGCCACTGGGCCCGGACCCCCACCTTCCTCCTCTCGGCGGCAG
GGAGCCTTCTCCCCCTCGCGGGTCGATTTGACCTGCTCAGGGCGCGGCGC----------TAAGCGCTGACAGGCGGCGG
TGCTGGTTGTCGCGACGGTGTCGTGGTAGGCTGCTCGCGGGCGAGTGCGTGGTGCTGTGACCTGCGGTGGCAGGCGCCCG
GCTCTCCAGATATGGGCAACGTGTGGTGCGTGCTAGACAGATCCGACGCATGGATCTTGGAGGGCGACGTGGGTTGGGTA
GTGGCCCGATGTTGCTGCTGCTCCTGTCATGGATGGCAGCGGCGCGGTGTGGCTCTGTCCCCTGGGTGCGGTGTCCTTCG
TACGGCGTGGTTGATCCACGGTAGATCAGCATGTTTGGCTACGGCAACGACTGGCACCTAGCCAAGCCTCGGCTCATTTG
CAAGCGGCCTAGTTCAGCCCTCG--------------------------------------------GTCCACTCCCCAT
CACCATCCATCATGGTGGCTTCCCAAGGGTGGGACAGGAGGGATCTTCCGCTCATCACTTTCGCCGGCGTAGCTGCGCGT
CTCAACTGGGGTGGTGTTGGGATCTTGGATGCTGGGGTGGCGGGCCTGGTGGTGGGAGGTGCAGTGCTCGTGGGCGACAC
CACGACACAGGTGTGGGCTGGTTATCATGGTCGTGAGAGGGGCATGGTGACCGGTGCTCGATGTTCAATGAGGATGGTGC
GGCGGGTGTCCTCGTGATTGGTCGCACCACTTTTCGGAGGCGGGGTTTTAT
>chr7D_555
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--------------------------------------------------------------------------TATGTA
TATATGTGCACTTGAAATTTAAGTACAATAGTACAAGTCACTTGGGTTTTGCTTATTTGGTAAGTTTAAGGCAATATTCG
TCGCAACACAATCATCATACACATTTTAAATTATAATGATACTTTGAGTTTTTTAACTATGTTTTGATTAATATCTCTAT
TTTTATATTTATTGTTTTGTGGCAAGGCACGGGCATTCATCTAGTTTTGAGGTAAGAGACCAAACCTTGTCTTTTT-TAG
ACAAAACAGATAAGAAATAGACAAAAAGGTGTGCATTGAATGTCCAGAATAGCTAGTATGGCCAAAAAAAGAACTAAGCC
ACACCTTAATTCCATCTCTCTTCTCTTAGCAAAGAGGCACCGCTATTCCCTCCACACCACACAGCCTATTCTCCTCGAAA
ACAAAACCAATCACTGACTACTTCGCCAACGTCGTTTCCAGCATTAA-CCCCATGAGCATTCGATTGCACGACATATAAT
GCAAATAGAACGGCCAAGAGCTAAAATCATGAGCAGCA---GGGTGGATGAGTCGGAGCTAAGGAAGGTCTTCCAGATGT
TCGACAAGAATGGTGACGGCCAGATCACCAAGAAGGAGCTAGGTGAGTTGCTCAAGAACCTAGGGATCTACATCGCGGAC
GACGAGATGGACGCGACCATGGCCAAGATTGATACCAACGGTGATGGCTGCATCGACGTCGAGGAGTTCGGCCTACTATA
TCGCTCCATCCTCGATGAAGGCGATGGGCCTAACGGTGGCAACATGGGCGACGAGGAGGAGGAGATGAGGGAGGCGTTCA
GTGTCTTCGACCAGAACGGTGACGGCTATATCACCATTGAAGAGCTGCGGTCCGTGCTGGCAAGCCTCGGCCTCAAGCAG
GGTCGCACCGTTGAGGAATGCCGCCAGATGATCAACAAGGTCGACGCCAATGGCGACGGCCGCGTCGACTTCAAGGAGTT
CAGCCAAATGATGCGCGGTGGCGCGGCCAATCATGAGGATTGACTTTATTGAATGGGAATGGTTCATTGTGGTACTATTA
GTAGTTGTAGATAATTAATTCACTTTAACATGCCAACGATTCAATGTGGATTGTATACATATATAAATACAAATACATGA
-GTATGAAACGACCAACTCTTCTCTTTTAAAAAGAC-GGTGAGGCTGCCTTCGTCCATGTTTTCATTTTTT-GGCTGGAT
TGGATTCATTATATGTTGTAAATGGTATTTATCATGGAAAACGGTAGGGTGAAGAAGCAAGTATTACTCCTATCCACTCA
TTTGGCGATCCTGTAGGCAGCAGGGGAGGCAACGCGCCGCCACCGGGCCCGGACCCCCTCCTTCCTCCTCTCGGCAGCAG
GGAGCCTTCTCCCCCTCGCGGGTCGATTTGACCTGCTCGGGGCGCGGCGC----------T----------AGGCAGCGG
CGCTTGTTGTCGCGACAGTGGCATGGTGGGCTGCTCGCGGACGAGTGCATGGTGCTATGACCTGCGGTGGCAGGTGCCCG
GCTCTCCAGATATGGGCGACGTGTGGTGCGTACTCGACAGATCCGACGCATGGATCTCGGAGGGCGACGTGGGTTGGGTA
GTGGCCCAATGTGGCTGCTGCTCCTGTCGTGGATGGCGGCGGCGCGGTGTGGCTCTGTCCCCTGGGTGCGGTGGCCTTCC
TACGGCGTGGTGGCTCCACGGTAGATCAACATGTTTGGCTACGGCAACGACTGGCACCTAGCCAAGCGTCGGCTCATCTG
CAAGCGGCCTAGTTCGGCCCTCAGTCCTGCCCCTCCTATTGCGTGTGCTACGATCACCGAAGGGTTAGTCCACTCCCCAT
CACCGTCCATCATGGTGGCTGCCCAAGGGTGGGAAAGGAGGGATCTTCCGCTCATCACTTACGCCAGTATAGCTGCGCGT
CTCAACTGGGGTGGTGTTGGGATCTTGGATGCCGTGGTGGCAGGCCTGGTGGTGAGAGGTGTAGTGCTCGTGGGCGACAC
CGCAGCACAGGTGTGGGCTGGTTGTCATGGTCGTGAGAGAGGTATTGTGACCGGTGCTCGATGTTGAATGAGGATGGTGC
GGAGGGTGTCCTCGTGATTGGTCGCACCACTTTTAGGAGGCGGGGTTTCAT
>chr4A_559
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------------------------------------------------------------------------------TA
TATATGTGCACTTGAAATTTAAGTACAACTGTACAAGTCACTTGTGTTTTGCTTATTTGGTAAGTATAAGGCAATATTCG
TCGCAACACAATCATCATACATGTTGTAAATTATAATGGTGCTTTCATTTTTTTAACTATGTTTTGATTAATATCTCTAT
TTCTATATTTATTGCTCTGTGACAAGGCACGGGCATTCAGCTAGTTTTTAGGTAAGAGAA-AAACCTTGTCTTTTTTTAG
ACAAGAGAGATAAGAAATAGACAAAAAGGTGTGCATTGAGTGTCCAGAATAGCTAGTATGGCCAAAAAAAGAACTATGAC
ACACCTTAATTCCATCTCTCTTCTCTTGGCAAAGAGGCACCGCTATTCCCTCCACACCACACAGCCTATTCTCCTCGAA-
ACAAAACCAATCACCGACTACTTCGCCAACATCGTTTCCAGCATTAACCCCCATGAACGTTCGATTGCACGACATATCAT
GCAAATAGAACGGCCAAGAGCTGAAATCATGAGCAGCAAGCGGGTGGATGAGTCGGAGCTAAGGAAGGTCTTCCAGATGT
TCGACAAGAATGGTGACGGCCAGGTCACCAAGAAAGAGCTAAGTGAGTTGCTCAAGAACCTAGGGATCTACATTGCAGGC
GACGAGATGGACGCGACCATGGCCAAGATTGATACCAATGGTGATGGTTGCATCGACGTCGAGGAGTTCGGCCTACTATA
TCGCTCCATCCTTGATGAAGGCGATGGGCCTAACGGTGGCAACATGGGCGACGAGGAGGAGGAGATGAGGGAGGCGTTCA
GTGTCTTCGACCAGAACGGTGACGGCTACATCACCATTGAAGAGTTGTGGTCCGTGCTGGCAAGCCTCGGCCTCAAGCAG
GGTCGCACCGTTGAGGAATGCCGCCAAATGATCAACAAGGTCGATGTCAATGGCGACGGCCGCGTCGACTTCAAGGAGTT
CAGCCAGATGATGCGTGGTGGCGCGGCCGGTCGTGAGGATTGACTTTATTGCATGGGAATGGTTCATTGTGGCACTATTA
GTAGTTGTAGATAATTAATTGACTTTAACATGCCAATGATTCAATGTGGATTGTATAC----ATAAATACAAATACATGA
CGTATGAAACGACCAACTCTTCTCTTTTATAAAGAC-GGTGAGGCTGCCTTTGTCCATGTTCTCATTTTTT-GGCTGGAG
TGGATTCATTATACGTTGTAAATGGTATTTATCACACAAAACGGTCGGGTGAAGAAGCAAGTTTTCCCCCTATCCACTCC
TTTGATGATCCTGCAGGCGGCAGGGGAGGCAAAGCGCCGCCATCGGGCCCGCACCCCCCTCTTCCTCCTCTTGGTGGTAG
G-------------------------------------------------------------------------------
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>chr4A_1903
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------------------------------------------------------------------------------AG
GGAGCCTTCTCCCCCTCGCGGGTCGATCTGACTTGCCCAGGGCATGGTGCTAGGTGCCGAT----------AGGAGGCGG
TGCTGGTAGTCACAATGGTGGCGTGGTGGCCTGCTCGCGGGTGAGTGCATTGTGCTATGACCTGCGGTGGTTGGTGCACG
GATCTTCAGATCTGGGCGACGTGTGGTGCGTGCTCAACAGATCCGACGCATGGATCTCGGAGGGCGGCATGGGTTGGGCA
GTGGCCCGATGTGGCTACTGCTCCCGTCGTGGATGGCAGTTGTGCGGTGTGGCTCTGTCCCCTGGGTGTGGTGGCCTTCC
TACAGCGTGGTCGCTCCATGGCAGATCAGCATGTTTGG------------CTGGCACCTGGCCAAGCGTCGGCTCATCTG
CAAGCGACCTAGTTCGGCCCTCGGTCCTGCCCCTCCTATTGTGTGTGTTGTGATCACCGAAGTGCTAGTCCACTCCCCGT
CATCGTCCATCATGGTGGCTTCCCAAGGGTGGGAGAGGAGGGATCTTCCGCTCATCACTTTCACCAGTGTAGCCGCACGT
CTCAAGTGGGGTTGTGTTGGGATCTTGGATGCCGGGGTGGCGGGCTTGGTGGTGGGAGGTGCGGTGCCCGTGGGTGACAC
CGTGGCACAGGTGTAGGCTGGTTGTCATGGTCATGAGAGAGGCATGGTGACTGGTGCTTGATGTTCAATGAGGATGCTGC
AGTGGGTATCCTTGTGATTGGTTGCACTGCTTTTCGGAGGCGGGGTTTTAT
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------
------------------------------------------------------------------------------S-
------------------------------------------------------S------S------------------
-------------------S-------------------S--------------------S-------------------
-------------------------------------S--------------S---------------------------
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----------------------------------------S--------------S------------------------
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--------------S-----------------------------------------------------------------
-------------------------------------------------------------------------------S
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-------------------------------------------------------------------------------S
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----------------S--S----------------S----------------------------------S--------
---------------S---------------------------S------------------------------------
----------S--------------------------------S--------------S---------------------
-------------------------------------------------------------SSSSSSSSSS---------
--------------------S------S--------------------S-------S-----------------S-----
-----------------S----------------S----------------------S----------------------
------------S---------------S--------------------------------------------S-----S
-----------S-S-----------------------------------------------------S---------S--
---------------S----------------------------------------------------------------
----S-----------------------------S------------------------------S-S------------
--------------------------------S-----------------------------------------------
-S--S------------------S---------------S----------------------------------------
--S------------------------------------------------
>forward_121
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---------------------AACGCACCTCCCAATCTGTT---------------------------------------
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>reverse_1016
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-------------------------------------------------------GGCATTCGATTGCACGACAT-----
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>forward_487
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-------------------------------------------------------------------GGCACGGGTTGAT
GACTAGT-------------------------------------------------------------------------
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>reverse_2405
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----ATCCATCATGGTGGCTTCCC--------------------------------------------------------
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---------------------------------------------------
