>input_sequence_73820
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------------------------------------------------------------------------ATGGCCAT
GGCGGCGCACGCGAGACGGCTGGCGGCCTCGCGCGACGACCCGTCGGCCGCCCCGACGTCGGGGAGGTCTCAGTTCGACC
TCTCGTCGGGGGCGGCCACCGCCGTGGTGTTCCTCTCCATCGTGCTCTGCTTCATCCTGCTCTGCACCTACTGCCGCTGC
GCTCGGCAGCGCGCCATGGCGGCCGCGCGCGGCGGCCGTGCCATGCGCCACGGCTTCCCGAGCGCCCTCCTCCGCCCAGC
CGACGGCGCGGCGCTCCCCGTGGTGCGCTACGCCGACGCCGGCGCCGGCGCCAAGAAGGGGCAGCAGCCCGAGGGGGACT
GCCCCGTCTGCCTCGAGGCCTTCGGCGACGACGACGGCGTCAAGGTCGTCCCGGCGTGCGGCCACGTCTTCCACGCCCCC
TGCATCGACCGGTGGCTCGACGTGCGCAACTCATGCCCCGTCTGCCGGTGCGTCGTGGTCTGCCACTACGCCGGCCGCGC
AGGCCCTGGTGCCGGCGACGACGGTGACGACCAGGAGATCGTGCTGGAGCGCGTGGTCGCCATGATCGAAGCGATAAGAG
AAGAGGAGGCCGCGGCGAGGCGCGCGCCGGCGACCGCGAGGGCCCGGGGGTGA---------------------------
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>chr1B_1_TraesCS1B01G220800
CATTTCAACAAGAGAAAAATGACTATGTTACAAGAAAATTTTACATGTTTAGTAATGAATTTGACTCATGTACAAGAAAA
ATGACAATTTGTATGGTTGTTCATCTCAAGAAATATAAATTTATTTTTTACTTCGGTTTATTCGGTTAACCGTTCGGTAT
TTTGGTATGTATATAAAAATCAAAGTTTAAATCGGTATGAAACGTTCATACTATACCGAAACCAGAAACCATAAAAACCA
TAAAATCGGTTCGGTTCGGTTTATTTTCGGTATAGTTTTTTGGTTCGGTTTTTAAATGCACAGAGTGACTCAATGGGGCG
TGGCGCTGCAAAGCCAGCCCCGAGCTCTCAGAAAAGCTGACCATCAGAGCTTTCAAGGTTCCTCGATGGTGGTGCGATGA
TTGTGTCGATGCTTTAGGGGCACAGCCGGCACTGCAACATCGGTTGGCGCGACGACCGCAGATGACTCGCGATCCAGTAG
GCCACAGGATGCTACGGCGACATGGGTGGGTGTTACAAGCCCACATTGAATGTTGCAAGTTGATCGCCGCACTACCGCAA
GAACGACGAGCGACGCTGCAGGAGGGTCACTGTTGCAAGCCCGTGCCAGCTGCCGCGAGGTGCCACACAGAGGTGCAGTG
AGGCTGATCACGGACTTCCTGTGAGCTCAACGCCCACGTACTACGAGGCTGCACCTCTGTGTGGGTTGTAAGTTGTAACC
GCCGGGGGAGATGGGTGGGAAGGATGACCCGAGCATGGTTTTCCAATTTGGAAGGACCTGGCTAGATGTAATCGATGGCT
GTCGACT--ACTGATTTCGTAAGAAAAAATTGGCTGACCCGCGTAGCCCAAAACCTAGCACCTCACCAGTCATCATCACA
AAACTAAACTCGCGTCCAATTACACGGAGAAAAAGGGCCACCTGTGGG-------------------------CTGTGGC
CTCCGGACAACCAGTCAACCAGAGAGGAGAGCG-----CGTCTCGTCGCGCGCACGAGCAGGCGCCGGAAACATGGCCAT
GGCGGCGCACGCGAGACGGCTGGCGGCCTCGCGCGACGACCCGTCGGCCGCCCCGACGTCGGGGAGGTCTCAGTTCGACC
TCTCGTCGGGGGCGGCCACCGCCGTGGTGTTCCTCTCCATCGTGCTCTGCTTCATCCTGCTCTGCACCTACTGCCGCTGC
GCTCGGCAGCGCGCCATGGCGGCCGCGCGCGGCGGCCGTGCCATGCGCCACGGCTTCCCGAGCGCCCTCCTCCGCCCAGC
CGACGGCGCGGCGCTCCCCGTGGTGCGCTACGCCGACGCCGGCGCCGGCGCCAAGAAGGGGCAGCAGCCCGAGGGGGACT
GCCCCGTCTGCCTCGAGGCCTTCGGCGACGACGACGGCGTCAAGGTCGTCCCGGCGTGCGGCCACGTCTTCCACGCCCCC
TGCATCGACCGGTGGCTCGACGTGCGCAACTCATGCCCCGTCTGCCGGTGCGTCGTGGTCTGCCACTACGCCGGCCGCGC
AGGCCCTGGTGCCGGCGACGACGGTGACGACCAGGAGATCGTGCTGGAGCGCGTGGTCGCCATGATCGAAGCGATAAGAG
AAGAGGAGGCCGCGGCGAGGCGCGCGCCGGCGACCGCGAGGGCCCGGGGGTGATGACGCGTACATGCCTGAGGGTGTACA
GGCACAGCTAACCTAACTGGGTAAGTTTATGTTTTAGCTTTGGTGTGATAGTACAGAGTGGTAATAACTTCACAATTGTG
CAAATTCTC------------------------------------TTAAGAACACTGAGTTGTGTATGATCAAAGCATTA
TACATATAG-AATGTGATGATTGTCAGTTTCATTGTTCAATAAAAATAGC-------TATGAACCCTATTTCTCTAAATT
CGGCGAATAGCATTCCTAAGTTTGCTGGTCTGTTTCACCGTGGTAGGCTCCGAAGAGGCAAAACTAATGCAAAC------
---AAGGTATTATTAATCAAA-----TGTTAGTTGATGTAAAAATATATATTGATTATGTTAGCATTTGTTAGGATA-TT
TGTTAAATGTATACTCCCTCCGTTCCGAATTAGTTGTCGCGGGTATGGATGTATCTAGATGTATTTTAGTTCTAGATACA
TCCATCTATGCGACGAGTAACTTGAAACGGAGGAAGTACTTGTTAATCATTTTGAATATATATAACCAACGACCACCTTA
GTCGCAGACATTATAAACCAGGTAAGCTGTATTCTCAAGGCTAT----CAATTATACATGCATAGACAGCCAGCCAGAAA
TTGAGAAAGAAGTCTCCTCCTTG--TTGGCTAAAGG-AGCACAAATCATTGACCCCTTCCTCGCCTGATCCTCCATTTTC
AGA--ATAAATAAATGTAAATGGGGCCAAGCCAACTAGGAGACATTTTGTTCTATATTGCTTATATTATTGGATAGGTAT
TAGGTGGTTGCTTTCCAAATCCAATTGTAGCCTGCGCCAATTTGTCACTTGGCAAAACTACAGCCCGCTAGATAGCGACA
CGTCGAATACCCAATTCGAGCTTTCGCTAATAATAAATAAATAAATATAAAATAAATTGAGCTATCTTATCCCAGTTCCT
ATCAGATAGGA-TTTTTTAGGTAGAGTAGCATACTAGTTTGTATGTAG-------ATATGAAGCCTCGCAACCCATATGG
CTTAATAAT
>chr1D_791
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----------------------------------------------------------------------ATGGATGGCT
GTCGAGTCGACTGATTTCCTAA-AAAAAATGGGCTGACCCACATAGATCAAAACCTAGCATC----------TCATCACA
AAACTAAACTCGCGTCCAATTACACGGAAAAAAAGGGCCACCTGTAAGGCCGTGTGGAACTCCCTCTCCCGGCCTGTGGC
CTCCGGACAACCAGTCAACCAGAGAGGAGAGCGCGTCGCGTCGCGTCGCGCGCACGAGCAGGCGCCGGAAACATGGCCAC
GGCGGCGCACGCGAGACGGCTGGGGGCCTCGCGCGACGATCCGTCGGCCGCCCCGACGTCGGGGAGGTCCCAGTTCGACC
TCTCGTCGGGGGCGGCCACCGCCGTGGTGTTCCTCTCCATCATCCTCTGCTTCATCCTGCTCTGCACCTACTGCCGCTGC
GCTCGGCAGCGCGCCATGGCGGCCGCGCGCGGCGGCCGCGCCATGCGCCACGGCTTCCCGAGCGCCCTCCTCCGCCCGGC
CGACGGCGCGGCGCTCCCCGTGGTGCGCTATGCCGACGCCGGCGCCGGCGCCAAGAAGGGGCAGCAGCCCGAGGGGGACT
GCCCCGTCTGCCTCGAGGCCTTCGGCGACGACGATGGCGTCAAGGTCGTCCCGGCGTGCGGCCATGTCTTCCACGCCCCC
TGCATCGACCGGTGGCTCGACGTGCGCAACTCATGCCCAGTCTGCCGGTGCGTCGTGGTCTGCCACTACGCCGACCGCGC
AGGCCCGGGTGCCAGCGACGACGCCGACGACCAGGAGATCGTCCTGGAGCGCGTGGTCGCCATGATCGAAGCGATAAGAG
AAGAGGAGGCCGCGGCGAGGCGCGCGCCGGCGACTGCGAGGGTCCGGGGGTGATGACGCGTACGTGCCTCGGGTTGTACA
GGCACAGCTAACCTAACTGGGTAAGTTTCTGTTGTAGCTTTGGCGTGATAGTACAGAGTGAT--------------TGTG
CAAGTTCTC------------------------------------TTAAGAACACTGAGTTGTGTATGATCAAAGCAAT-
---ATATAG-AATGTGATGATTGTCAGTTTCATTGTTCAACAAAAATGGC-------TAGGAACCTTATTTCTCTAAATT
CGGCGAAAAGCATTCCCAAGTTTGCTGGTCTATTTCACCGTGGTAGGCTCCGAAGAGGCAAAAGTAATGCATACATATAA
GAAAAAGTAATATTAATCATGTTAGTTG-------ATCTATTTTTTT-ATTATGATATAGTAGTATTTGTTAGGATA-CT
TGTTAAAAGTACACGTAGT-------------------------------------------------------------
----------------------------------------TGCTAATGATTTTGAGTATGTATAAGCAACGGCCACCTTA
GTTGCAGACATTATAAACCAGCTAAGCTATATTCTCGAGGCTATCATACAAGTGTACAGGCATAGACAGCAAGCCAGAAC
TCGAGAAAGAAGTCTTCTCCTTG--TTGGCTAAAGGGAGCACAAATCATTGACCCCTTCCTCGCCCGACCCTCCATTTTC
AGAATATAAATAAATGTAAATGGGGCCAAGCCAACTAGGAGACGTTTTGTTCTATATTGCTTATATTATTGGATAGGTAT
TAGGTGGTTGCTTTCCAAATCCAATTGTAGCCTGCGCCAATTTGTCACTTGGCAAAACTACAGCCCGCTAGATAGCGACA
CGTCGAATACCCAATTCGAGCTCTCGCCAATAATAAATAAATAAATATAAAATAAATTGAGCTATCTCATCCCAGTTCCT
ATCAGATAGGA-TTTTT-AGGTAGAGTAGCATACTAGTT----TGTAG-------ATATGAAGCCTCGCAACCCATATGG
CTTAATAAT
>chr1A_808
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---------ACTGATTTCCTAAGAAAAAATCGGCTGACCCGCGTAGCCCAAAACCTAGCATC----------TCATCACA
AAACTAAACTCGCGTCCCATTACACGGAAAAAAAGGGCCACCTGTAAGGCCGTGTAGAACTCCCTCTCCCGGCCTGTGGC
CTCCGGACAACCAGTCAACCAGAGAGGAGAGCGCGTCGCG-----TCGCGCGCACGAGCAGGCGCCGGAAACATGGCCAC
GGCGGTGCACGCGAGACGGCTGGCGGCCTCGCGCGACGACCCTTCGGCCGCCCCGACGTCGGGGAGGTCCCAGTTCGACC
TCTCGTCGGGGGCGGCCACCGCCGTGGTGTTCCTCTCCATCATCCTCTGCTTCATCCTGCTCTGCACCTACTGCCGCTGC
GCTCGGCAGCGCGCCATCGCGGCCGCGCGCGGCGGCCGCGCCATGCGCCACGGCTTCCCGAGCGCCCTCCTCCGCCCGGC
CGACGGCGCGGCGCTGCCCGTGGTGCGCTACGCCGACGCCGGCGCCGGCGCCAAGAAGGGGCAGCAGCCGGAGGGGGACT
GCCCCGTCTGCCTCGAGGCCTTCGGCGACGACGACGGCGTCAAGGTCGTCCCGGCGTGCGGCCACGTCTTCCACGCCCCC
TGCATCGACCGGTGGCTCGACGTGCGCAACTCGTGCCCCGTCTGCCGGTGCGTCGTGGTCTGCCACTACGCCGACCGCGC
AGGCCCGGGTGCCGGCGACGACGGCGACGACCAGGAGGTCGTCCTGGAGCGCGTGGTCGCCATGATCGAAGCTATAAGAG
AAGAGGAGGCCGCGGCGAGGCGCGCGCCGGCGACCGCGAGGGTCCGGGGGTGATGACGCGTACGTGCCTCGGGTTGTACA
GGCACAGCTAACCTAACTGGGTAAGTTTCTGTTGTAGCTTTGGTGTGATAGTACAGAGTGATAATAAATTCACAACTGTG
CAAGTTCTTTTAAGAACACTGAGTTTTTTTTTTTTGCGGGGGACTTTAAGAACACTGAGTTGTATATATTCAAAGCTAT-
---ATAATGTAATGTGATGACTGTCAGTTTCTTTGTTCAATAAAAATGGCTAGGAATTAGGCACCTTATTTCTGAAAATT
CGGCGAAAAGCATTCCTAAGTTTGCTGGTCTATT--ACCGTGGTAGACTCCGAAGAGGCAAAACTAATGCAAATATATAA
GAAAAGGTATTATAAACCATGTTAGTTGTCAGTTGATCTATTTTTTT-TATTAATTGTGTTTGTATTTGTTAGGATATTT
TGTTAAATGTA----TAGA-------------------------------------------------------------
----------------------------------------TGTTAATCATTTTGAGTATGTATAACGAACCACCACCTTA
GTTGCAGACATTATAAACCAGCTAAGCTATATTCTCGAGGCTATCATACAATTGTACAGGCATAGACAGCAAGCCAGAAA
TTGAGAAAGAAGTCTCCTCCTTGTGTTGGCTAAAGGGAGCACAAATCATTGACCCCTTCCTCGCCTGACCCTCCATTTTC
AGAATATAAATAGATGTAAATGGGGCCAAGCCAACTAGGAGACGTTTTGTTCTATATTGCTTATATTATTGGATAGGTAT
TAGGTGGTTGCTTTCCAAATCCAATTGTTGCCTGCGCCAATTTGTCACTTGGCAAGACTACAGCCCGCTAGATAGTGACA
CGTCGAATACCCAATTTGAGCTTTCGCCAATTATAAATAAATAAAAATAAAATAAATTGAGCTATCTCATCCCAGTTCCT
ATCAGATATGATTTTTT-AGGTAGAGTAGCATACTAGTT----TGTACGGAGTATATATGAAGCCTCGCAACCCATATGG
CTTAATAAT
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--S-------
-----S------------S-----------S-----------------------------S-SSSSSSSSSS--------
----------------------------S----------------SS---------------------------------
------------------------------------------S------------------------------------S
---------------------------------------------------------------------S----------
-----------------------------------------S-S------------------------------------
--------------------------------------S--------------------------------------S--
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-------------------------------------------------------------------------S------
------S-----------------S-----------------S-------------------------------------
------------------------------------------S--------------------S-----SS--S------
----------------------------S----S--------------------------S------S-------S----
---S-------------------------------------------------------------------------S-S
SSS--------------------------------------------S-----------S-----S--------------
-------S-----------------------S------------------------------------------------
-------------------SS--------S-------S--SSSS-S-S----S----------S----------------
-----------S--SSSS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---------------S---S--------------------
--S------------------S------S-------S----------------S----S-----------S---------
--------------------------------------------------------------------S-----------
-------------------------------------------S------------------------------------
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---------------------------S---------------------------------------S------------
-----------------S---------------------SSSS-------------------------------------
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>forward_517
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-----------------CGACATGGGTGGGTGTTACA-------------------------------------------
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>reverse_2112
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-------------------------------AGTTGTCGCGGGTATGGATG-----------------------------
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