>input_sequence_73819
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--------------------------------------------ATGGACCTGGTACCACAGCCCGACAGCCCGCACTCG
GACGGCAGCGGCGGCGCGACGTCGGGGGCTTCGTCGGCGGTGTCGTCGCTGTCGCCAGGTGGCGCGGTCTCGCCGTCGCC
AAGCAGGTACGAGTCGCAGAAGCGGCGGGACTGGAACACGTTCGGGCAGTACCTCCGGAACCACCGCCCCCCGCTGTCGC
TGGCGCGGTGCAGCGGCGCGCACGTGCTGGAGTTCCTGCGCTACCTCGACCAGTTCGGCAAGACCAAGGTGCACGCTGCC
GGGTGCCCATTCTTCGGCCACCCTGTGCCGCCGGCGCCATGCCCGTGTCCGCTCCGGCAGGCGTGGGGCAGCCTCGACGC
ACTCGTCGGCCGCCTCCGTGCTGCCTATGAGGAGAACGGCGGACGACCGGAGAACAACCCCTTCGGCGCCAGGGCCGTGC
GGCTCTACCTCCGCGAGGTCCGGGAGCACCAGTCACGCGCACGCGGAGTTAGCTACGACAAGAAGAAGCGCAGGAAGCCG
CCCCACCCCCCCGGCTCTGCCGACATCCCCTCCCACGAAGGCAACAGCAACGGCCACCACCAGTACCACCAGATGCCCCC
GCCGCCTCCTGGCGCCGCGGCGTGA-------------------------------------------------------
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>chr1B_1_TraesCS1B01G172100
TATGGGGTCATGTTTTTTCTCTTAGGTACTCCCT---TTTTTATTTATATAGTTCGAATATTGGCTTTGACTGAATTCAA
ATTTTGTAAAGTTTGATCAAGTTTATTGAAAACAATATGAACATTTACAATACAAATGTATATGATGTAAACATATATTT
ATGGATAAATCTAGTGACATTGATTTATTAAAATTTAACTTAGATAAAAGCTAACATATGAAGTAAATAAGAACGGAGGA
CGTATATAGAATTTTCAACAAAATACATAATTCCAACGGCTGTATTCGTGCGCCATTCCTCCTTGCCCTTCAGCTCAACA
TTTTCATTTAAAATCCTCCCGCCGTACCGACGACATTTCACCGCCCATTTCCCAACTTTTTCCCCATCCATCCATCCCGT
CACATCACC-TTCACCTCCCACTGTCTCCTTCCCGGCCCATTCACCAGCCACCCCTCCTTCCTTCTCTTCAAGAGCTGGC
TAGGTAGCCAGCCAGGCAGCCACCATTAATACTCACCCCCAAGCTTCGCTTTCTCAGCCCTCCCATTCCCCCCTTTCATC
GGCGTCGCAGGATCCCAGCATGTAGCTGCAGCTCCTGGCCATATCCCACACCGGTTACTTAGTTGTGGTTTCGGATAGTG
ATATCTCGATTGATCTTGGGGGTGAGATTCGTTCTCCGCTACACTCCTACGTAGCTGCGTATCTCCTGTTCTTCACAAGC
TGCAGAGACAGAAGCAGCTAGCAAAGTGAGGTGAGGTGAGCTGAATGCGAGCTGCTCTTGCACTCTCGTCTCGGATAGAG
TAGAGCACTATTTATAGTGGAGATACCACCACTCTCTCTCAACTTGTTCCATAGGACCACCGCGCCACGGCTCCCCAAGA
AGCGTCAGCGTGCGCGCGCTAACTCCTAAATAGATCTCCCATTCTTCTTCTTCTAGCGCTCGCTGGATCGTTTGGTCCTT
ACTGAATACTGACCAGCTGCATGGTTTGATTTGTTGCCAGATCAATGGACCTGGTACCACAGCCCGACAGCCCGCACTCG
GACGGCAGCGGCGGCGCGACGTCGGGGGCTTCGTCGGCGGTGTCGTCGCTGTCGCCAGGTGGCGCGGTCTCGCCGTCGCC
AAGCAGGTACGAGTCGCAGAAGCGGCGGGACTGGAACACGTTCGGGCAGTACCTCCGGAACCACCGCCCCCCGCTGTCGC
TGGCGCGGTGCAGCGGCGCGCACGTGCTGGAGTTCCTGCGCTACCTCGACCAGTTCGGCAAGACCAAGGTGCACGCTGCC
GGGTGCCCATTCTTCGGCCACCCTGTGCCGCCGGCGCCATGCCCGTGTCCGCTCCGGCAGGCGTGGGGCAGCCTCGACGC
ACTCGTCGGCCGCCTCCGTGCTGCCTATGAGGAGAACGGCGGACGACCGGAGAACAACCCCTTCGGCGCCAGGGCCGTGC
GGCTCTACCTCCGCGAGGTCCGGGAGCACCAGTCACGCGCACGCGGAGTTAGCTACGACAAGAAGAAGCGCAGGAAGCCG
CCCCACCCCCCCGGCTCTGCCGACATCCCCTCCCACGAAGGCAACAGCAACGGCCACCACCAGTACCACCAGATGCCCCC
GCCGCCTCCTGGCGCCGCGGCGTGAGCCGGTGACCGGCGTCCGCCGGAGCTAGCTAGCTGCAACGACTTTTCCTACGTA-
-----TCCTATGTATTCCCACCATCTCTCCAGCTAGCCACCGAGCTCTTGCTTACTACAAGTCCCTAGCTAGCTAGCTAG
TCTCGTCCTACTAGTGCAAACGCGGATTAAATTCCTCCATGAATCCATGCTTGCTACCCCTACTAGTCTAGTACTACTCT
CGTCCGGATCATTTCCAAACTTTGATCATATGATATGATCCCTACTATTCGTTCGCTGGTATTTTCCCCACCCTCTACTA
CT----GTGCGTTGTTTGTGATGAACATGAACTGATGTTATGTTTAGCTAACTAGCTAGCTCCATGGCTCGGTTTAATCC
TCTATGTAATCGATTTGGTGCAATTAATTAGTTTAGTCCTCTTGTAACCTCTCGCATCTTGTTGTTGATCTATCTCTTGG
TATTGCAATTGATGAGCAATGTGATGTCCTGTTGCATCTTGTGA-GGGGTACGGTGCGGTCGTGGAGTCATGTCAGTGTG
TGTCGTCTAGGTCCAGTTGGGGAATCTAACGTACTGTTCTCCCTGGGGAGAGGAGGGGTCACGGACGGGCGATGGACATG
ATACGACGCCTCTTTTAGGCCGCTTTTGCATTGCTTTTTATGGTAATAATAGTACTCCTAATACCACAAGTAGCTAGGCT
AGGCTATCTTGACCACCTCTGCCATGCAGCGTCTCTGTCAGGCTAAAACAGCTGAATGGGAATGTATACAGAAATGGTAG
CAGCCTAGGTACGCCCTACCTAGCTTGTTTTCAGCTTTGCACCCATCGTACTG-----------------GAAAAACC--
-TGAGTTTTCAGTGGTTACTTAAGTATAAATATATGCAGAGGTACATGTGATTTCTCTGTTTAGTGTACTATGAGTGCAG
TTTTGTGCGTACATGTTTCTGTCTCTGCAAAGCTTTCACTCGTTGATGCTTAGGAGGGCATGCCATGCATCTCCTTTTCC
ACATACCTTTTATGGT
>chr1D_1
TATGGGGTCATGTTTTTTCTCTTAGGTACTCCCTCCATTTTTATTTATATAGTTCGAATATTGGCTTTGATTGAAGTCAA
ATTTTATAAAGTCTGATCAAGTTTATTGAAAACAATATGAACATTTACAATACAAATGTATATGATGTAAACATATATTT
AAGGATAAATCTAATGATATTAATTTATTAAAATTTAACTTAGATAAAAGCTAACATATGAAGTAAATAAAAGCGGAGGA
CGTATATAGAATTTTCAACAAAATACATAATTCCAACGGCTGTATTCGTGCGCCATTCCTCCTCGCCCTTCAGCTCAACA
TTTTCATTTAAAATCCTCCCGCCGTACCGACGACATTTCACCGCCCATTTCCCAACTTTTTCCCCATCCATCCATCCCGT
CACATCATCTTTCACCTCCCACTGTCTCCTTCCCGGCCCATTCACCAGCCACCCCTCCTTCCTTCTCTTCAAGAGCTGGC
TAGGTAGCCA--------GCCACCATTAATACTCACCCCCAAGCTTCGCTTTCTCAGCCCTCCCATTCCCCCCTTTCATC
GGCGTCGCAGGATCCCAGCATGTAGCTGCAGCTCCCGGCCATATCCCACACCGGTTACTTAGTTGTGGTTTCGGATAGTG
ATATCTCGATCGATCTTGGGGGTGAGATTCGTTCTCCGCTACAGTCCTACCTAGCTGCGTATCTCCTGTTCTTCACAAGC
TGCAGAGACAGAAGCAGCTAGCAAAGTGAGGTGAGGTGAGCTGAACGCGAGCTGCTCTTGCACTCTCGTCTCGGATAGAG
TAGAGCACTATTTATAGTGGAGATACCACCACTCTCTCTCAACTTGTTCCATAGGACCACCGTGCCACGGCTCCCCAAGA
AGCGTGTGCGTGCGCGCGCTAACTCCTAAATAGATCTCCCATTCTTCTTCTTCTAGCGCTCGCTGGATCGTTTGGTCCTT
ACTGAATACTGACCAGCTGCATGGTTTGATTTGTTGCCAGATCAATGGACCTGGTACCGCAGCCCGACAGCCCGCACTCG
GACGGCAGCGGCGGCGCGACGTCGGGGGCTTCGTCGGCGGTGTCCTCGCTGTCGCCAGGGGGCGCGGTCTCGCCGTCGCC
AAGCAGGTACGAGTCGCAGAAGCGGCGGGACTGGAACACGTTCGGGCAGTACCTCCGGAACCACCGCCCCCCGCTGTCGC
TGGCGCGGTGCAGCGGCGCGCACGTGCTGGAGTTCCTGCGCTACCTCGACCAGTTCGGCAAGACCAAGGTGCACGCCGCC
GGGTGCCCATTCTTCGGCCACCCCGTTCCGCCGGCGCCATGCCCGTGTCCGCTCCGGCAGGCGTGGGGCAGCCTCGACGC
ACTCGTCGGCCGCCTCCGTGCTGCCTATGAGGAGAACGGCGGACGACCGGAGAACAACCCCTTCGGCGCCAGGGCCGTGC
GGCTCTACCTCCGCGAGGTCCGCGAGCACCAGTCACGCGCACGCGGAGTTAGCTACGACAAGAAGAAGCGCAGGAAGCCG
CCCCACCCCCCCGGCTCCGCCGACATCCCCTCCCACGAAGGCAACAGCAACGGCCACCACCAGTACCACCAGATGCCCCC
GCCGCCTCCCGGCGCCGCGGCGTGAGCCGGTGACCGCCGTCCGCCGGAGCTAGCTAGCTGCAACGACTTTCCCTACGTAT
CCTATTCCTATGTATTCCCACCATCTCTCCAGCTAGCCACCGAGCTCTTGCTTACTATAAGTCCCTAGCTAGCTAG----
TCTCCTCCTACTAGTGCAAGCGCGGATTAAATTCATCCATGAATCCATGCTCGCTACCCCTACTAGTCTAGTACTACTCT
TGTCCGGATCATTTCCAAACTTTGATCATATGATATGATCCCTACTATTCGTTCGCTGGTATTTTCCCCACCCTCTACTA
CTGTACGTGCGTTGTTTGTGATGAA------CTGATGTTATGTTTAGCTAACTAGCTAGCTCCATGGCTCGATTTAATCC
TCTATGTAATTGATTTGGTGCAATTAATTAGTTTAGTCCTCTTGTAACCTCTGGCATCTTGC--TTGATCTATCTCTTGG
TATTGCAATTGATGAGCAAAGTGATGTCCTGTTGCATCTTGTAA-GGGGTACGGTGTGGTCGTGGAGTCATGTCAGTGTG
TGTCGTCCAGGTCCAGTTGGGGAATCTAACGCACTGTTCTCCCTGGGGAGGGGAGGGGTCACGGACGGGCGATGGACATG
ATACGACGCCTCTTTTAGGGCGCTTTTGCATTGCTTTTTATGGTAATAATAGTACTCCTAATACCACAAGTAGCTAGGCT
AGGCTATCTTGACCACCTCTGCCATGCAGCGTCTCTGTCAGGCTAAAACAGCTGAATTGGAATGTATACAGAAATGGTAG
CAGCCTAGGTACGCCCTACCTAGCTTGTTTTCAGCTTTGCACCCATCGTACTGATGTACATGCAGCACTAGAAAAACC--
-TGAGTTTTCAGTGGTTACTTAAGCATAAATATATGCAGAGGTACATGTGATTTCTCTGTTTAGTGTACTATGAGTGCAG
TTTTGTA-GTACATGTTTCTGTCTCTGCAAAGCTTTCACTCGTTGATGCTTAGGATGGCATGCCATGCATCTCCTTTTCC
ACATACTTTTTATGGT
>chr1A_278
TGTATT--------------------------------------------------------------------------
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-----------------------------------------------GTGCGCCATTCCTCCTCGCCTTTCAACCCAACA
TTTTCATTTAAAATCCTCCCGCCGTACCGACGACATTTCACCGCCCATTTCCCAACTTTTTCCCCATCCATCCATCCCGT
CACATCACCTTTCACCTCCCACTGTCTCCTTCCCGGCCCATTCACCAGCCACCCCTCCTTCATTCTCTTCAAGAGCTGGC
TAGGTAGCCA--------GCCACCATTAATACTCACCCCCAAGCTTCGCTTTCTCAGCCCTCCCATTCCCCTCTTTCATC
GGCGTCGCAGGATCCCAGCATGTAGCTGCAGCTCCCGGCCATATCCCACACCGGTTACTTAGTTGTGGTTTCGGATAGTG
ATATCTCGATCGATCTTGAGGGTGAGATTCGTTCTCCGCTACAGTCCTACCTAGCTGCGTATCTCCTGTTCTTCACAAGC
TCCGGAGACAGAAGCAGCTAGCAAAGTGAGTTGAGGTGAGGTGAATGCGAGCTGCTCTTGCACTCTCGTCTCGGATAGAG
TAGAGCACTATTTATAGTGGAGATACTACCACTCTCTCTCAACTTGTTCCATAGGACCACCGCTCCACGGCTCCCCAAGA
AGTGTCTGCGTGCGCGCGCTAACTCCTAAATAGATCTCCCATTCTTCTTCTCCTCGCCCTCGCTGGATCGTTTGGTGCTT
ACTGAATACTGACCAGCTGCATGGTTTGATTTGTTGCCAGATCAATGGACTTGGTACCACAGCCCGACAGCCCGCACTCG
GACGGCAGCGGCGGCGCGACGTCAGGGGCTTCGTCGGCGGTGTCGTCGCTGTCGCCAGGGGGCGCGGTCTCGCCGTCGCC
AAGCAGGTATGAGTCGCAGAAGCGGCGGGACTGGAACACGTTCGGGCAGTACCTCCGGAACCACCGCCCCCCGCTGTCGC
TGGCGCGGTGCAGCGGCGCGCACGTGCTGGAGTTCCTGCGCTACCTCGACCAGTTCGGCAAGACCAAGGTGCACGCCGCC
GGGTGCCCATTCTTCGGCCACCCCGTGCCGCCGGCGCCATGCCCTTGTCCGCTCCGGCAGGCGTGGGGCAGCCTCGACGC
ACTCGTCGGCCGCCTCCGTGCTGCCTATGAGGAGAACGGCGGACGACCCGAGAACAACCCCTTCGGCGCCAGGGCCGTGC
GGCTCTACCTCCGCGAGGTCCGCGAGCACCAGTCACGCGCACGCGGAGTTAGCTACGACAAGAAGAAGCGCAGGAAGCCG
CCCCACCCCCCCGGCTCCGGCGACATCCCCTCCCACGAAGGCAACAGCAACGGCCACCACCAGTACCACCAGATGCCCCC
GCCGCCTCCCGGCGCCGCAGCGTGAGCCGGTGACCGCCGTCCGCCGGAGCTAGCTAGCTGCAACGACTTTCCCTACGTAT
CCTAT------GTACTCCCACCATGTCTCCAGCTAGCCACCGAGCTCTTGCTTACTATAAGCCCCTAGCTAGCTAG----
TCTCCTCCTACTAGTGCAAGCGCGGATTAAATTCCTCCATGAATCCATGCTTGCTACCCCTACTAGTCTAGTACTACTCT
TGTCCGGATCATTTCCAAACTTTGATCATATGATATGATCCCTACTATTTGTTCGCTGGTATTTTCCCCACCCTCTGCTA
CTC----TGCGTTGTTTGTGATGAACATGAACTGATGTTGTGTTTAGCGAACTAGCTAGCTCCATGGCTCGATTTAATCC
TCTACGTAATCGATTTGGTACAGTTAATTAGTTTAGTCCTCTTGTAACCTCTCGCATCTTGTTTTTGATCTATCTCTTGG
TATTGCAATTGATGAGCAATGTGATGTCCTGTTGCATCTTGTGAGGGGGTACGGTGTGGTCGTGGAGTCATGTCAGTGTG
TGTCGTCCAGGTCCAGTTGGGGAATCTAACGTACTGTTCTCCCTGGGGAGGGGAGGGGTCACGGACGGGCGATGGACATG
ATACGACGCCTCTTTTAGGGCGCTTTTGCATTGCTTTTTATGGTAATAATAGTACTCCTAATACCACAAGTAGCTAGGCT
AGGCTATCTTGACCACCTCTGCCATGCAGCGTCTCTGTCAGGCTAAAACAGCTGAATTGGAATGTATACAGAAATGGTAG
CAGCCTAGGTACGCCCTACCTAGCTTGTTT-CAGCTTTGCACCCATCGTACTGATGTACATGCAGCACTTGAAAAACCTC
GTGAGTTTTCAGTGGTTACTTAGGCATAAATATATGCACACGTACATGTGATTTCTCTGTTTA-----------------
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>SNPs
----------------------------------------------------------------------S----S----
-----S------S-------------------------------------------------------------------
-S-----------S---S---S------------------------------------------------S-S-------
---------------------------------------------------------------S----------------
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----------SSSSSSSS--------------------------------------------------------------
-----------------------------------S--------------------------------------------
----------S--------------------------------S------S-----------------------------
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------S-------------------------------------------------------------------------
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-----------------------------------------------------------S--------------------
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----------------------------------------------------------------------------S---
-----------------------S--------------------------------------------------------
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----------------------S---------------------------------------------------------
-----------------S--------------------------------------------------------------
---------S--------------------------S---------------------------------S---------
---------------------------------------------------------S------------------SSSS
----S--------------S------------------------------------------------------------
S-------------------------------------------------------------------------------
-----------------------------------------------------------------------S--------
---------------------------------------------------------------S----------------
--------------------------------------------------------S-----------------------
-------S------------------------------------------S-----------------------------
-------------------S------------------------------------------------------------
---------------------------------------------------------S----------------------
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------------------------S-------------------------------------------------------
------SS-----------------------------------------------S------------------------
------S---------
>forward_691
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------------------------------GTTCTCCGCTACACTCCTACG-----------------------------
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>reverse_2137
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--------------------------------------------------------CGGTCGTGGAGTCATGTCAG----
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