>input_sequence_73777
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------CTTTTAAAGCCTCTGGAGAAAGACACCTCAACGCAC
AAAAAGTCACCAAATATAGCACAAATTTTTCTTGGAGGTTCTTATCTAGGAGTAGAAACTAGTGAGCGGCTAGAGATGTC
ACTCTTCTCACCACCACCACCACCACCACCACCATTGTTGGTCACACCATATGGGTCAAGAGGAGGCAGTGATTCGTCCG
TTTCAATCGATCCTTACGTACCATTGATCGTGACTTTGATCATCATTGCAGCCCTCATGGTTGCCTCTTTGGCTTTTGCA
AATTTATGTGTTAAGCGTTGGGCATTCTTCAACAGTTCATATGGTACACAGTCATTCGTGAAGCAAGAATGTGGCATGTG
CACTCGTGAGGGCACCATTGATGTTGCTTATCCTGTGAAGAAGGGTAATGTGGAGAATGCAACTTTAGAGGAGTTGGTGG
AGTCAGATCCACCACAAAACGAAGAGGATGACGAGGATGGTTCTTCCGAAGAAGGTTTTTAAGACATCAATCAATCTATG
TTTTACTTATCTAGAATTTTCTAGATATTATGTTATGTTCCCTCGATGCTTTGTTCAAAGAGATTTGGATGTGTTTTGAA
AGCTTGATCCTAGTGGTCCAAAGGATA-----------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------
>chr1B_1_TraesCS1B01G271400
GGGCGATGATACAACAACAAGCTGCAACCGGCATGAGGCCGTGCTACAACCGGCAGCCGGCGAGCTGTAACCGGCATGGG
ACGGTGCTACAACCGGAGGCCGGCGGAGCTGCAACTGCCAGTTGCCGTCAATGCTGGAACCAGCAGCGGCAAAATCTATA
ATCAGCAGCACAAAAAGCTGGAACCAACCAGGGCATTTATTGCGACGATGGAGAATGGGTTGTGTTGTGGTCGTGATTTT
CCTGGAATCGACAACAC-AAAAAGTTGCGATTGTGTGGATAGGAAGCTGTAATTGACGAACAACGGCGACACGCGTGACT
AGCGACACAACGCTGCAACCTGGAGGCACCAATTTTTTTGCCTCGACCCGGCAATAGGTTGCACTGTGACCCGGCAATGG
TTTGCACTGTGATCCGGCAACGAGGGCGACGGCGGTGGGGGA--GGGGTGCGAGCTGCTACCGGTGGGGCGTCAGGGGTG
CTAGCATGAGGAAGGAGACGGATTTGTGGGGAGATCTAACAATGTGGGGCACTTGAATC-GGTAGCCGTGCGGCAACCGG
CCGAAAATTATACAGTTGGTTCCACTAAAAAGGATCCAACACTTTGAAATCTAATAAAGAGAGGCCATATGAGAGCATGC
GTGATCCAATGATAACAATTTTCTTTCTACCAATCTAAAGCAGAGCAAAAGCTTGAAGATAAACATTTGGCCAGCTAGGC
GACATGCTTTTATTTGGAAGGTTGTGCATATTTCTCATGATAAACTTGAGAAAAGAAAGATGTACACTCTAAAAGATATA
GATTCGAGCTGTAACTGTCTCTATATAGAAACTCTTAGTGTCCTCTTTTAAAAGGTTTGCAACTGAATGCTACGAGACAA
TCTGCATCACTTCTCAAACGGCACGTAAAGCGAAAAGTGTGTGACGTGAAATGCATGCAGCAACGGCCTAGGAAAATTTT
CTAACAAACATGTTATTAAAAGTCCTATTTTGCCCCTATGTCTCCTTTTAAAGCCTCTGGAGAAAGACACCTCAACGCAC
AAAAAGTCACCAAATATAGCACAAATTTTTCTTGGAGGTTCTTATCTAGGAGTAGAAACTAGTGAGCGGCTAGAGATGTC
ACTCTTCTCACCACCACCACCACCACCACCACCATTGTTGGTCACACCATATGGGTCAAGAGGAGGCAGTGATTCGTCCG
TTTCAATCGATCCTTACGTACCATTGATCGTGACTTTGATCATCATTGCAGCCCTCATGGTTGCCTCTTTGGCTTTTGCA
AATTTATGTGTTAAGCGTTGGGCATTCTTCAACAGTTCATATGGTACACAGTCATTCGTGAAGCAAGAATGTGGCATGTG
CACTCGTGAGGGCACCATTGATGTTGCTTATCCTGTGAAGAAGGGTAATGTGGAGAATGCAACTTTAGAGGAGTTGGTGG
AGTCAGATCCACCACAAAACGAAGAGGATGACGAGGATGGTTCTTCCGAAGAAGGTTTTTAAGACATCAATCAATCTATG
TTTTACTTATCTAGAATTTTCTAGATATTATGTTATGTTCCCTCGATGCTTTGTTCAAAGAGATTTGGATGTGTTTTGAA
AGCTTGATCCTAGTGGTCCAAAGGATAATAAATAATATGCATCTCTTAGATTGTTGTTATGTATATACAGATCTCACTAT
TGTT--------------------------TAGTTTTCGTTCATGTATTGGTCGGTTCATTATTCGGTGTGAGCTTCGCG
CCATTTTTTCACGCTTGCCTTGAGACTTGAACAACCAAACACACACCAGAAATAAGTTTGAACCGTTCATGCACATAAGC
CTTACCCAAAAATTATTGCTCACGT-------------CGTCCTTCAAAATTAGAGAT----------------------
---------GTTTTTAATCGGCATTATGTAAGCAACATATTTTGGCACTTTACACCCATTTGTATGTACTG-AAATTTTG
GCACCCATTTAGCAAGTCTTAGCTTGCTTCCACAATGCTAAAAGTCTAGCATTTCACTAATTTATGCCACTTTTCCTGAA
AAAGTATTTCATTTAATTTGTACATTTCTACTGTATTGTTCATGCATGTGCACATGCATTTTTT-GGCAACTGTAGATTC
TCTTGTGTGTCTTCAGCAAGTGCCGGTGG---------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------GTGAACCTTTATTTGCTGCTTGAC
ACAAGTCGAACATATAACATGCAAAAAAGCACGCAAAGTATATAACCCACATACTCATATATATATAACCCGCATACTCC
TGTGAGTTAAGATACAGACGACAAAAAAGCACACAATTTTCGCATAAAGAAACGAGAAAATTTTAGGATTATCCCCATCA
CTATTACCTCTTGTAAGGCAAGAGCATCTACAACCAGCCTCCTCAAATTCTCCTTAAACGTTCGCGGACGCGCCTAGTCA
GTGACTGGATAGAAGAGAGAAGACAAAAAG-TGACCCAAACGGACCACTTGTATCATTCCTATATCTCTGGGTTGTCTGC
GAACCTTCATATTGAGAAGATTCTAGGGAGAAAATGAGGGATCGCGGAAGCGCCTGGTCAGTCTGCCATGTAGGACGCGG
TCCAACC----CAACCTTTTCACTTTCTTTATTCATTCTTTTCTTTCTTTCTTTTCAT---CTTCATCAATCACGTGCAA
GTGACCGGATATAT
>chr1D_1
GGGCGATGATACAACAACAAGCTGCAGCATGCATGGGGCCATGCTACAACCGGCAGCCGGCGAGCTGCAACCGAGATGGG
GCGGTGCTACAACCGGAGGCCGGTGGGGCTGCAACCGCCAGTTGCCGTCAATGCTGGAACAAGCGGC-GCAAAATCTATA
ACCAGCGACACAAAAGGCTAGAACCAGCTAGGGCATTTATTGTGACAGTGGAGAATGGGTTGTGTTGTCGCCGCGATTTT
CCTGGATCGATG-ACAC-AAAAAGTTGCGATGGGGTGGATAGGAAGCTGTAATCGACAAACAACGGCAACACGCGTGACC
AAGGACACAACGCTGCAACCTGGAGGCACAA--TTTTTTTCCTCGACCCGGCAATGGGATGCACTGTGATGCGACAGCAA
GGGATGCTAGAGACA---AACGAGGGCGACGGCGACAG-----GGGGGTGCGAGCTGCTACCGGCGGGGCGTCAGGGGTG
CTAGCATGAGGAAGGAGACGAATTTGTGGGGAGATCTAACAATGTGAGGCACTTGAATTGGGTAGCCGCGCGGCGAACGG
ACGAAAATTATACAGTTGGCTCCACTAAAACGGATCCACCACTTTGAAATCTAATAAAGAGAGGCCATATGAGAGCATGC
GTGATCCAATGATAATAATATTCTTTTTACCAATGTAAAGCAGAGCAAAAGCTTGAAGATAAACATTTGGCCAGCTAGGC
GACATGCTTTTATTTGGAAGGTTGTGCATATTTCTCATGATAAACTTGAGAAAAGAAAGATATACACTCTAAAAGATATA
GATTCGAGCTGTAACTGTCTCTATATAGGAACTCTTAGTGTCCTCTTTTTAAAAGTTTGCAACTGAATGCTATGAGACAA
TCTACACCACTTCCCAAACGGCACGTAAAGCGAAAAGTGGGTGACGTGAAATGCATGCAGCAATGGCCTAGGAAATTTTT
CTAACAAACATGTTATTAAAAGTCCTATTTTGCCCCTATGTCTCCTTTTAAAGCCTGTGGAGAAAGACACCTCAACGCAC
ACAAAGTCACCAAATATAGCACAAGTTTTCCTTGGAGGTTCTTATCTAGGAGTAGAAACTAGTGAGCGACTAGAGATGTC
ACTCTTAT---CAT------CACCACCACCACCATTGTTGGTTACACCATATAGGTCAACAGGAGGCGGTGATTCGGCCG
TTTCAATCGATCCTTACGTACCATTGATCGTGACTTTGATCATCATTGCAGCCCTCATGGTTGCCTCTTTGGTTTTTGCA
AATTTATGTGTTAAGCGTTGGGCATTCTTCAACAGTTCATATGCTACACAGTCGTTCGTGAAGCAAGAATGTGGCATGTG
CACTCGTGAGGGCACCATTGATGTTGCTTATCCTGTGAAGAAGAGTAATGTGGAGAATGTGGCTTCAGAGGAGTTGGTGG
AGTCAGATCCACCACAAAACGAAGAGGATGACGAGGATGGTTCTTCCGGAGAAGGTTTTTAAGACATCAATCTATCTATG
TTTTACTTATCTAGAATTTTCTAGATATTATGTTATGTTCTCTCAATGCTTTGTTCAAAGAGATTTGGATGTGTTATGTA
AGCTTGATCCTAGTGATCCAAAGGATAATAAATAATATGCACCTCTTAGATTGCTGTTATGTATATACAGATCTCACTAT
TGTTTAGGTTTTGGTGTTTTTCAGCTCTTGTAGTTTTAGTTCATGTATTGGTTGGTTCATTATTCGGTGTGAGCTTCGCG
CCATTTTTTCACGCTTGCCGTGAGACTTGAACAACCAAACAAACACTAGAAATAAGTTTGAATCGTTCATGCACATAAAC
CTTACCAAAAAATTATTGCTCTTGCATTTTAATCTGCACATCCTTCAAAATTAGAGAT----------------------
---------CTTTCTAATTGGCACTATGTAAGCAACACATTTTGGCACTTTGCACTCATTTGTATGTATTG-AAATTTTG
GCACCCATTTAGCAACTCTTAGCTTGCTTGTACCGTGCTAAAAAGCTAGCATTTCACTAATTTATGCCACTTTTCCTGAA
AAAATATGTCACTTAATCTGTACATTTCTACTGCATTGTTCATGCATGTGAACATGTAATTTTTTGGCAGTTATAGATTC
TCTCGTTGTTTTTGGCA---------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------AGTGCCGATGCGTGAACCTTTATTCGCCACTTGAC
ACAAGACGAACATATATCATGCAAAACAGCAATCAGAGTATATAACCCGCATACTCA-----------------------
TGTGAGTTAAGATACGGACGACAAAAAAGCACAG--TTTTCACATAAAGAAACGAGAAAATTTTAGGATTATCTCCATCA
CTATTATCTCTTGTAAGGTAAGAGCATCTACAGCCGGCCTCCTCAAATCCTCCTTAAACATTCGCGGACGCGTCTAGTCA
GTGACCGGATAGAAGAGAGAAGAAAAAAATATGACCCAACCGGACCTCTCATATCATTCCTATACGTCTGGGTTATCCGC
AAATCTTCATATTGAGAAAACTGTAAGGAGGATATGAGGATTCGCGGAAGCGCTTGGTCAGTCCGCCATGTAGGACGTGA
TCCACCCCGGACAACCTTTTCATTTTCTTTATTCATTCTT----------------------------------------
--------------
>chr1A_1
GGGCGATGATACAACAACAAGCTACAACCGGCATGGGGCCGTGCTACAACCGGCAGCCGGTGAGCTGCAACCGGCATGGG
GCGGTGCTACAACCGGAGGCAGGCGGAGCTACAACCGCCAGTTGCCGTCAATGCTGGAACCAGCGGC-ACAAAATCTATA
ACCAGCGACACAAAAAGTTGGAACCAGCCAGGGCATTTATTGCGACAGTGGAGAATGGGTTGTGTTGTCGCCGCGATTTT
CCTGGAATCAACGACACAAAAAAGTTGCGATAGGGTGGATAAGAAGCTATAATCGAGGAATAACGGCGACACGCGTGATC
AACGACACAACACTGCAACCTGGAGGCACAA--ATTTTTGCCTCGACCCGGCAATGGGTTGCACTGTGATGCGACAGCAA
GGGATGCTAGAGACA---AACGAGGGCGACAACGACAGGGGGAGGGGGTGCGAGCTGCTACCGGCGGGGCGTCAGGGGTG
CTA-----------------------------------ACAATGTGGGGCAC-------GGGTAGCCGCGCGGCTACCAG
CCGAAAATTACACAGTTGGTTCCACTAAAAAGGATCCAACACTTTGAAATCTAATAAAGAGAGGCCATATGAGAGCATGC
GTGATCCAATGATAACAATATACTTTCTACCAATCTAAAGCAGAGCAAAAGCTTGAAGATATACATTTGGCCAGCTAGGC
GACATGCTTTTATTTGGAAGGTTGTGCATATTTCTCATGATAAACTTGAGAAAAGAAAGGTGTACACTCTAAAAGATATA
GATTCGAGCTGTAACTGACTCTATATAGGAACTCTTAGTGTCCTCTTTTTAAAAGTTTGCAACTGAGTGCTATGAGACAA
TTTACATCACTTCTCAAACGGCACGTAAAGTGAAAAGTGGGTGAC----------------AATGGCCTAGGAAAATTTT
CTAACAAACATGTTATTAAAAGTCCTATTTTGCCCCTATGTCTCCTTTTAAAGCCTGTGGAGAAAGACACCTCAACGCAC
ACAAAGTCACCAAATATAGCACAAGTTTTTCTTGGAGGTTCTTATCTAGGAGTAGAAACTAGTGAGCGACTAGAGATGTC
ACTCTTAT---CACCACCACCACCACCACCACCATTGTTGGTCACACCATATGGGTCAACAGGAGGTGGTGATTCGTCCG
TTTCAATCGACCCTTACGTACCATTGATCGTGACTTTGATCATCATTGCCGCCCTCATGGTTGCCTCTTTGGTTTTTGCA
AATTTATGTGTTAAGCGTTGGGCATTCTTCAACAGTTCATATGCTACACAGTCATTCGTGAAGCAAGAATGTGGCATGTG
CACTCGTGAGGGCACCATTGATGTTGCTTATCCTGTGATGAAGGGTAATGTGGAGAATGTGGCTTCAGAGGAGTTGGTGG
AGTCAGATCCACCACAAAACGAAGAGGATGACGAGGATGGTTCTTCCGAAGAAGGTTTTTAAGACATCAATTAATCTATG
TTTTACTTATCTAGAATTTTCTAGATATTATGTTATGTTCCCTCGATGCTTTGTTCAAAGAGATTTGGATGTGTTTTGTA
AGCTTGATCCTACTGGTCCAAAGGATAATAAATAATATGCATCTCTTAGATTGCTGTTATGTATATACAGATCTCACTAT
TGTTTAGGTTTTGGTGTTTTTCAGCTCTTGTAGTTTTAGTTCATGTATTGGTCGGTTTATTATTCGGTGTGAGCTTCGCG
CCATTTTTTCACGCTTGCCGTGAAACTTGAACAACCAAACAAACACCAGAAATAAGTTTGAACCGTTCATGCACATAAGC
CTTACCAAAAAATTATTGCTCTTGCATTTTAATCTGCACGTCCTTCAAAATTAGAGATCATTTTAATCGAGTTCAAAAAA
AAGGGAGATCTTTTTAATTGGTACTATGTAAGCAACACATTTTGGCAATTCGAACTCATTTGTATGTATTGAAAATTTTG
GCACCCATTTAGCAAGTCTTAGCTTGCTTCTACCGTGCTAAAAAGCTAGCATTTCACTAATTTATGCCACTTTTCCTGAA
AAAATATGTCACTTAATCTGTACATTTCTACTGCATTGTTCATGCATGTGAACATGTATGTTTTTGGCAGTTATAGATTC
TGTTGTGTGTCTTCAGCAAGTGCCGGTGCCTGAACTTTTTTTTTAGATTCGGCAACCTTTATTAAACAATAATCATAGCA
GTTACAAGGAAGGGGAGTAAGAAATCAGGAGGTTTATCTCGCCACTCTCTAGAAAAATTTCCTCTGTAACTAGCCCAAGC
AAGCCCATGCGCTGCTGCATTACCTTCCCGAGCACAATGAACAATAGTGCCGGTGCCTGAACCTTTATTCGCCGCTTGAC
ACAAGAGGAACATATAACATGCAAAAAAGCAAGCAAAGTATATAACCCGCATACTCA-----------------------
TGTGAGTTAAGATACAGACGACAAAAAAACACACAATTTTCACATAAAGAAACAAGAAAATTTTAGGATTATCTCCATTA
GTATTACCTCTTGTAAGGTAAGAGTATCTACAACCGGTGTCCTCAAATCCTCCTTAAACGTTCACGGACGCGCCTAGTCA
GTGACCTGATAGGAGAGAGAAGAAAAAAAAGCGACCC-ACCGAACCCCTTATATCATCCCTATACGTGTGGGTTGTCCGC
GAACCTTCATATTGAGAAAATTGTAGAGAGGATATGAGGGACCGCGGAAGCGCCTGGTCAGTCCGCCATGTAGGACGTGG
TCCACCCCGGACAACCTTTTCACTTTCTTTCTTTATTCATTCTTTTTTTTCTCTATCTTCACTTCATCAATCACGTGCAA
GTGACAGGACATAT
>SNPs
-----------------------------------S-------------------------------S------------
S----------------------------------S----------------------------S--S------------
-S----SS------------------S-------------------SS--------------------S-S--S------
---------S--S------------------S-S-------------------S-------------------------S
-S---------------------------S-SS----------------------S-------------SS--S--SSSS
SSSSSS--SSSSS-SSSS----------------SSS----S----------------------S---------------
--------------------S-------------------------------------S---------S-----S-----
--------------------------------------------------------------------------------
-------------------S------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------S--------------------S---S------------------S-------
---S-----------------------------------S-----------------------S----------------
--------------------------------------------------------S-----------------------
-S----------------------S-------------------------------------------S-----------
------S-SSS------------------------------------------------S-------S------------
------------------------------------------------------------------------S-------
-------------------------------------------S------------------------------------
-----------------------------------------------------------SSS---S--------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------------S-
-----------------------------------------------------S--------------------------
-------------------------------------S------------------------------------------
-------------------S---------------------S--------------------------------------
------S--------------SS-S-------------------------------------------------------
---------S--------S----S-------------S-------------S---S------------S-----------
------------------------------S--SS--------SS-----------------------------------
---S---S---S-----S---------------S----------------S-----S------------SS-S-------
----------------------------S---------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------S--S-------
-----S-------------------------S----------------S--------SSSSSSSSSSSSSSSSSSSSSSS
-----------------------------------------S-------------------------------S------
------------------S----------------S------------S-------------------------------
-----S-----------------S-----S---------S------S---S-------------SS-----------S--
------------------S---S-------S-S------------------------------S-------------S--
----S------------------------------------SS---S-----S-SSS-----------------------
-----S---S----
>forward_234
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------ATGGGTTGTGTTGTGGTCGT------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------
>reverse_2390
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------TGCTGCTTGAC
ACAAGTCGA-----------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------
