>input_sequence_73747
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---------------------------------------------------------------------------ATGGC
TTCCGCATCCGCCTCGCCACCGGCGAACGCCCACGCACCGCAGGCGCTGTCCAAGTCCACTCTCCTGGGCGGCGTTGGGG
ATCTGGACGCGGCCGTGTCCCTCCGCCTCCACGCCCTCTTCCTCCCGGTGCCCCGCCTCCTCCTCAAGGCCTTCGAGGTC
GCCGGCGACGGGCGCATCTGGCTCCCCGTCCCCATCTCCCTGCTGCTGATCTCCACCACCACCTCGTCCGTGGTCTCCCC
TCTCCTCGTCGGCCTCGTCGTGGGCCTGGTGCTCGACCTCGCCTTCGTCGGCCTCGCCAAGCTCATCGTCCGCCGTCCGC
GCCCGGCATACAACGCCGCGGACATGTATGTCGCCGTCTCCGTTGACCACTGGTCCTTCCCCAGCGGTCACTCCTCGCGC
GCCTTCCTCGTCGCCGCCTTCCTCGCGGACGGGGGCCTCCCTCTCCCTCGCGAGCTGCTGTTCCTCTGGGCGGCCGCGAC
TTCGGCGTCAAGGGTGCTTCTGGGCCGGCACTACATTCTCGATGTGCTCGCCGGCGCTTGGCTCGGCGTGCTGGAGGCCT
GGCTCAGCAACTTGATCTTGAGATTCTTGTGCGGCCGCACCAGCTTTCTTGTATGCTAG---------------------
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>chr6A_1_TraesCS6A01G247800
CCATGGTAAAATGAGATA-TACTTTGAAATTACTCGACTGGAATTAGCCTTCGAAATGAATGATACATAGGACTTCAA-A
TGAATGGTACTCAACCGGAATTTTAGGATAG----------CCTAATGCGAGCTCTCTCACGTCTTCTATGTTTTTGGTC
GTTGGATGACGTTTTAATTAGTTTCTAGCCGTCAGATCTTCCTCTAAACAATAGTTTACCATGATTTGGTCAGCTTATCC
TAATGAGCCACTACTCTAAGGACATTTTTGAAGGCTTGTGGTTGGTTGGGTTTCTATGGAATCACACTATAGTAACATTT
CCTCCTGTAGCCCTAGGT--------------------------------------------------------------
-----------GGAGGCCGGTTGCGGAGAGGAGAACCCCGTTGCCTCCGTTCCGGTTAGTAGTTTAGGCTAGGGTTTTTT
TAGTCCTTGCTGGTGTAATGCTAGGGTAGAGGACGGCGCTTCTTCTTGGAGTTTGTCTTCCGGGCTTCGACCCTTCTCGA
GATTCGTCTGTTTAGATATAGTCGACGAGCTTTAGTGTAGATTTTTGCCATCTCCTTGGGGCGGTGTGGTTACAGTTTCT
CGTCATGTGGCGAGATTTGGTGTCAGATGATTAAGATCTATGCATGG-TTCAACGACGATGACTACGGCTC----GCATT
GGTCCTTAGGGACACGTGGAACTATCATCGACA----------GGCTTCGGTGGGGAACAGTGACAGCAGCACGTCGATG
GCTTATTTTGGCGGCAGTGAAGGTCGTTCGGTGGTCTCGAAATCTCAATGTTATTTTTGTTATGTTTAAGGTACCTCTTA
CTCCGGACGAATCTTTTATA------------------------------------------------------------
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-----------------------ATAAATATGATCCTTTC-AAAGAAAACTGGAATTAGACTTCAAATTCTTCTTTGAAA
AGGATGCATAGCGTCAAAGCGGCCCTTAATATTCAGATAAACCCCTTTCCAA-------TCCTCCGGATC----TCGTAG
GCCAAAGAGCAAAATCATAGAGGGGGGAACCGACCGACAGACACCTGTGCCGACCCTTCGCCTCTGCCGGCGCGCATGGC
TTCCGCATCCGCCTCGCCACCGGCGAACGCCCACGCACCGCAGGCGCTGTCCAAGTCCACTCTCCTGGGCGGCGTTGGGG
ATCTGGACGCGGCCGTGTCCCTCCGCCTCCACGCCCTCTTCCTCCCGGTGCCCCGCCTCCTCCTCAAGGCCTTCGAGGTC
GCCGGCGACGGGCGCATCTGGCTCCCCGTCCCCATCTCCCTGCTGCTGATCTCCACCACCACCTCGTCCGTGGTCTCCCC
TCTCCTCGTCGGCCTCGTCGTGGGCCTGGTGCTCGACCTCGCCTTCGTCGGCCTCGCCAAGCTCATCGTCCGCCGTCCGC
GCCCGGCATACAACGCCGCGGACATGTATGTCGCCGTCTCCGTTGACCACTGGTCCTTCCCCAGCGGTCACTCCTCGCGC
GCCTTCCTCGTCGCCGCCTTCCTCGCGGACGGGGGCCTCCCTCTCCCTCGCGAGCTGCTGTTCCTCTGGGCGGCCGCGAC
TTCGGCGTCAAGGGTGCTTCTGGGCCGGCACTACATTCTCGATGTGCTCGCCGGCGCTTGGCTCGGCGTGCTGGAGGCCT
GGCTCAGCAACTTGATCTTGAGATTCTTGTGCGGCCGCACCAGCTTTCTTGTATGCTAGTTCTTGCATGTTTTTGGTCAT
TCGCATCACTGTCACACAAGTGCATTTTTTGTTGCAATTGATTCACATTTGTGAGCACACATGTTTTTGCTAGTGCTTGA
ACTGATGAGCATGCCATGTGCCATGAACATGAAGGATATATTGAAGCCAGTTGCTTTTTTATGAGCACTTTTATGAACAC
TTTTATATGAGTACAATTGTTGGTGGATGGTGGTTTCTTCACCTTTCAGTTATTGCAAATGACAATTGACAACTAGCAGC
AGTACTGATGTCCTAACATGATTACTCTTCCTTCATCACGCCAGGTGCTAGCTAGATTTACGTTGCTTAGGCTGAGTGCA
TTGGAAACATTGGTTTTTAGATCCCAGGTGTTCTTACCCTCATCATGGGTAGACAGTTCTTCTTCAGTGAATGTTCACAT
CATAGTTGCCTATACAGTAGTACAAAAATCTTTGTAAAATGGATATGCTGCTAGCAGTATATGCTAGATATATTCCATGC
CAATTTGATTTGCCAGGTTACACTAGAGAGG-TTTAAGAAGTGCTATCAGCTGCAGGAGGCTCCTCTCAGAAAATGGCAC
CAGTCATCCAGTTATATTAGTCTGTTC-CTCTCGATCAAGAAAGAGTCTTCTCAGAACTAGGATGTTGTTTCAGCTTGCT
TCTGGGAGATCTCACAGAAGAA---AGTAATCGATGGCAGGTGGTGTATCCAAATGTTGAAAGCGAGTGGGAATCGGCCG
GGGAGCAAGAGGTTGCAACTGTCTGCATCCACTGGCGAGTGGCGACAATCCCGGATGAGAAAACAAGGAGCGATCGCGGC
ATTTTTGTACTGTTTTGCCTCAAGACCTTTGATATTTCAGCAACACT-CATAATCAGCTACAGTAACAATTCTGGACTTG
TTTGACCGTGGCATGTCCTTGGAGAAAGTGGACGACGGTAGCTGAACAAGCTCGTTTCCGGCGTAGAAGCCTCAGATCTG
AGTGATGATAAGTTGATGACCTAAC
>chr6D_1
CCATGGTAAAATGAGATAATACTTTGAAATTACTCAACTGGAATTAGCCTTCCAAATGAATGGTACATATGACTTCAAGA
TGAATGGTACTTAACTGGAATTTTAGGATAGTAAAACTGAACCTAATGCGAGCTCTCTCACGTCTTCTATGTTTTTGGTC
GTTGGATGGCGTTTTAATTAGTTTCTAGCCGTCAGATCTTCCTCTAAACAGTAGTTTACCATGATTTGGTCTACTTGTCC
TAATGAGCCACTACTCTAAGGACATTTTTGAAGGCTTGTAGTTAGTTGGGTTTCTATGGAATCACACTATAGTAACGTTT
CCTCATGTAACCCTAGGTGGTTAGGACAAATTTTCCCCTCTAGAATTCACTGGCGAGCCCGTGGATTTGTCTCCCTTCTG
CATGCCGCTCCGGAGGCCGGTTGCGGGGAGGAGAATCCCGCTGCCTCCGCACCGGTTAGTAGCTTAGGCTAGGGTTTTTT
-AGTCCTCGCTGGTGTGATGCTAGGGTAGACGATGACGCTTCTTCTTGGAGTTTGTCTTTCGGGCTTCGACCCTCCTCGA
G-TTCGTCCGTTTGGATGTAGTCGATGAGCTCCAGTGCAGATTCCTGCCGCCTCCTTGGGGCGGTGTGGTTACAGTTTCT
CGTCATGTGGCGAGAGTTGGTGTCAGATGCTTAAGATCTATGCATGGGTTCAATGACGATGACTACGACTTCAGGGCATT
GGTCCTTAGGGACACGTGGAACTATCATCGACAAGGTCAAGTCGGCTCCGGTGGGGAGCAGCGACAGAATCGCGTCGGCG
GCTTATTTTGGCGGCAGTGGAGGTCGTTCGGTGGTCTCGGGATCTCAATGTAATTTTTGTTATGTTTGAGATACTTTTTA
CTCCCGACGAATCTTTTATACTCCATCCGTTCCTAAATATTTGTCTTTCTAGATATTTCAAATAGACCACCACGTAAGGA
TGTATATAGACATATTTTAGAGCGTAGATTCACTCATTTTTCTCCGTATGTAGTCATTTGTTGAAATCTCTAGAAAGATA
AATATTTAGGAGCAGAAGGAGTAATAGATATGATCCTTTC-AAAGAAAACTGGAATTAGACTTCAAATTCTTCTTTGAAA
ACGATACATTGCATCAAAGCGGCCCTTAATATTCAGATAAACCCCTTTCCAA-------TCCTCCGGCTCGTAGTCGTAG
GCCAAAGAGCAAAATC--AGAGGGGGGAACCGACCGACAGACACCTGGGCCGACCCTTCGCCTCAGCCGGCGCGCATGGC
TTCCGCATCCGCCTCGCCACCGGCGAACGCTCGCGCACCGCAGGCGCTGTCCAAGTCCACTCTCCTGGGCGGCGTTGGGG
ATCTGGACGCGGCCGTGTCCATTCGCCTCCACGCCCTCTTCCTCCCGGTGCCCCGCCTCTTCCTCAAGGCCTTCGAGGTC
GCCGGCGACGGGCGCATCTGGCTCCCCGTCCCCATCTCCCTGCTGCTGATCTCCACCACCACCTCGTCCGTGGTCTCCCC
TCTCCTCGCCGGCCTCGTCGTGGGCCTGGTGCTCGACCTCGCCTTCGTCGGCCTCGCCAAGCTCATCGTCCGCCGCCCGC
GCCCGGCATACAACGCCGCGGACATGTACGTCGCTGTCGCCGTTGACCACTGGTCCTTCCCCAGCGGCCACTCCTCGCGC
GCCTTCCTCGTCGCCGCCTTCCTCGCGGACGGGGGCCTCCCTCTCCCTCGCGAGGTGCTGTTCCTCTGGGCGGCCGCGAC
TTCGGCGTCAAGGGTGCTTCTGGGCCGGCACTACATTCTCGATGTGGTCGCCGGGGCTTGGCTCGGCGTGCTGGAGGCCT
GGCTCAGCAACTTGATCTTGAGATTCTTGTGCAGCCGCAGCAGCTTTCTTGTGTGCTAGTTCTTTCATGATTTTGGTCAG
TCGCATTACTGTCACACAAGTGCATGTTTTCTTGCAATTGATTTACGTTTGTGAGCACACATGTTTTTGCTAGTGCTTGA
ACTGATGAGTATGCCATGTGCCATGAACATGAAGGATATATTGAAGCCAGTTGCTTTTTTATCAGCACTTTCATTAGCAC
TTTTAT--GAGTACAATTGTTGGTGGATGGTGGTTTCTTCACCTTTCAGTTATTGCAAATGACAATCGACAACTAGTAGC
AGTACTGATGTTCTAACATGATTACTCTTTCTTCATCATGCCAGGTGGTAGCTAGATTTACGTTGCTTAGGCTGAGTGCA
TTGGAAACATTGGTTTTCATATCCCAGGTGTTCTTACCCCCATCATGGGTAGACAGCTCTTCTTCAGTGAATGTTCACAT
CGTAGTTGCTTATAC-----TACAAAAATCTTCGTAAAATGGATATGCTGCTAGCGGTATATGCTAG--ATATTCCATGC
CAATTTGATTTCTCAGGTTACATTCGAGAGG-TTTAAGAAGTGCTATCAGCCGCAGGAGGTTCCTCTCAGGAAAGGGCAC
CTGTCATCCAGTTATATTATTCTGTTCACTCTCGATCAAGAAAGAGTCTTCTCAGAACCAGGATGTTC-TTCAGCTTGCT
TCTTGGAGGACACAC---AGAA---AGTAATCGATGGCAGGTGGTGTATCCAAATGTTGAAAGCGAGCGGGAATCGGCCG
GGGAGCAAGACGTTGCAACTGTCTGCATCCACTGGCGAGTGGCGACAATCCCGGATGAGAAAACAAGGAGCGACAGAGGC
ATTTTTGTACTGTTTTGCGGCAAGACCTTTGATATTTCAGCAACACTACATAATCAGCCACAGTAACAATTCTGGACTTG
TTTGACCGTGGCATGTCCTCGGAGAAAGTGGACGACGGTTGCTGAAGAAGCTCGTTTCCGGCGTAGAAGCCTCAGATCTG
AGTGATGATAAGTTGATGACCTAAC
>chr6B_237
CACTTACACTAAGGACTTC-------------------------------------------------------------
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--------------------------TTTGAAGGCTTGTGGTTGGTTGGGTTTCTATGGAATCATAC----GTAATGTTT
CCTCCTGTCCCCCTAGGTGGTTAGGAC-AATTTTTCCCTTTAGAATTCACTGGTGAGCCCATGGATTTGTCTCCCCTCTG
CATGCCGCTCCGGAGGCCGGTTCCGGGGAGGAGAATCCCGCTGCCTCCGCTCCGGTTAATAGTTTAGGCTAGGTTTTTTT
-AGTCCTCGCCGGTGTGATGTTAGGGCAGACGATGACGCTTCTTCTTGGAGTTTGTCTTTCGGGCTTCAACCCTCCTCAA
G-TTCGTCCATTTGGATGTGGTCGACGAGCTCCAGTGTAGATTCCTGCCGCCTCCTTGGGGCGGTGTGGTTACAGTTTCT
CGTCATGTGGCAAGAGTTAGTGTTAGATGCTTAAGATCTATGCATGGGTTCAACGACGATGACTACGACTTCAGGGCATT
GGTCTTTAGGGACACGTGGAACTATCATCGACAAGGTCAAGTCGGCTCGGGTGGAGAGCAACAACAACAACGCGTCCGCG
GCTTATTTTGGCGGCAGTGGAGGTCGTTCGGTGGTCTCGGAATCTCAATGTTATTTTTGTTATGTTTGAGATACTTTTTA
CTCCCGACT-ATCTTTTATA------------------------------------------------------------
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-----------------------ATAGATATGATCCTTTCAAAAGAAAACTGGAATTAGACTTCAAATTCTTCTTTGAAA
ACGATACATTGCATAAAAGCGGCCCTTAATATTCAGATAAACCCCTTTCCAAATTCCAATCCTCCGGATC----TCGTAG
GCCAAAGAGCAAAATCATAGAGGGGGGAACCGACCGACAGACACCTGTGCCGACCCTTCGCCTCTGCCGGCGCGCATGGC
TTCCGCATCCGCCTCGCCACCGGCGAACGCTCGCTCACCGCAGGCGCTGTCCAAGTCCACTCTCCTGGGGGGCGTTGGGG
TTCTGGACGCGGCCGTGTCCCTCCGCCTCCACGCTCTCTTCCTCCCGGTGCCCCGCCTCCTCCTCAAGGCCTTCGAGGTC
GCCGGCGACGGGCGCATCTGGCTCCCCGTCCCCATCTCCCTGCTGCTGATCTCCACCACCACCTCGTCCGTGGTCTCCCC
TCTCCTCGTCGGCCTCGTCGTGGCCCTGGTGCTCGACCTCGCCTTCGTCGGCCTCGCCAAGCTCATCGTCCGCCGCCCGC
GCCCGGCATACAACGCCGCGGACATGTACGTCGCCTTCGCCGTTGACCACTGGTCCTTCCCCAGCGGCCACTCCTCGCGC
GCCTTCCTCGTCGCCGCCTTCCTCGCGGACGGGGGCCTCCCTCTCCCTCGCGAGGTGCTGTTCCTCTGGGCGGCCGCGAC
TTCGGCGTCAAGGGTACTTCTGGGCCGGCACTACATTCTCGATGTGGTCGCCGGGGCTTGGCTCGGCGTGCTGGAGGCCT
GGCTCAGCAACTTGATCTTGAGATTCTTGTGCGGCCGCAGCAGCTTTCTTGTGTGCTAGTTCTTGCATGTTTTTGG----
-----------TCACACAATTGCATTTTTCCTTGCAATTGATTCACGTTTGTGAGCACCCGTGTTCTTGTTAGTGCTTGA
ACTGATGAGTATGC-------------CATGAAGGATGTATTGAAGCCAGTTGCTTTTTTATGAGCACCCT-----GCAC
TTTTAT--GAGTACAGTTGCTGGTAGATGGCGGTTTCTTCATCTTTTAGTTATTGCAAATGACAATTGACAACTAG---C
AGTACTGATGTCCTAACATGATTACTCTTCCTTCATCATGCAAGGTGCTAGCTAGATTTACGTTGCTTAGGCTGTGTGCA
TTGGAAACATTGGTTTTCAGATCCCAGGTGTTCTTACCCCCACCTTGGGTAGGCAGCTCTTCTGCAGTGAATTTTCACAG
CGTAGTTGCTTATGCTACACAATACTT---TTTGTAAAATGGATATGCTGGTAGCAGAATATGCTAC--ATATTCCATAC
CAATTTGATCTGTCAGGTTACATTCGAGTGGTTTTAAGAAGTGCTATCAGCTGCAGGAGGTTTCTCTCAGAAAAGGGCAC
CTGTCACCCAGTTATATTAGTCTGTTCACTCTCGATCAAGAAAGAGTCTTCTCAGAACTAGGATGTTG-TTCAGCTTGCT
TCTGGGAGATCACAC---AGAAGAAAGTAATCGATGGCAGGTGGTGTATCCAAATGTTGAAAGCGAGCGGGAATCGGCCG
GGGAGCAAGACGTTGCAACTGTCTGCAT-CACTGGCGAGTAGCGACAATCCCGGATGAGAAAACAAGGAGCGATCGCGGC
ATTTTTGTACCGTTTTGCCGCAAGACCTTTGATATTTCAGCAACACCGCATAATCAGCTACAGTAACAATTCTGGACTTG
TTTGACCGTGGCATGTCCTTGGAGAAAGTGGACGACGGTAGCTGAA-------------------GAAGCCTCAGATCTG
AGTGATGATAAGTTGATGACCTAAC
>SNPs
-----------------------------------S----------------S---------S------S----------
-----------S---S----------------------------------------------------------------
--------S-----------------------------------------S--------------------SS---S---
----------------------------------------------------------------------------S---
---------S----------------------------------------------------------------------
--------------------------S--------S----S--------S------------------------------
S------S--------S-------------S--S-S-----------------------S--------------S-----
-S------S----S---S-------------SS----------SS----SS-----------------------------
---------------S-------------S-------------------------------------S--S---------
-----------------------------------------------S---------S---S-------S-S-----SS-
-------------------S-------------------S---------------------------S--S---S-S---
----S---------------------------------------------------------------------------
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--------------------------S-----------------------------------------------------
-S---S---S--S-------------------------------------------------------------------
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------------------------------S-S-----------------------------------------------
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---------------------------------------------------------------------------S----
----------------------------S---------S----------------------------S------------
------------------------------------------------------S-------------------------
----------------------------------------------S-------S-------------------------
---------------------------------------S------------S--------------------------S
------S-----------------------S---------------S---------------------------------
---------S-------------------------------------------------------------S--S-S---
------SS--------------------------------------------------------------------S---
--------------------------------------S-----------------------------------------
-----------------S---------------------S----------------S-----------------------
-S-------S-----SSS-S-----------------------------------------------SS-----------
------------S---------S-S-----------------------------------S-------------S-----
-S------------------------------------------------------------------S-----------
-----------S---SSS-------------------------------------------------S------------
----------S---------------------------------------------------------------------
-------------------S------------------------------------------------------------
----------------------------------------------S---------------------------------
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>forward_711
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---------------------------------------------------AACGACGATGACTACGGCTC---------
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>reverse_2475
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--------------------------------------------------------------------------TGGCAC
CAGTCATCCAGTTA------------------------------------------------------------------
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