>input_sequence_73723
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------ATGTCGTGGTGGAAGTCCAAGTCGCACTTCAGCGCCGACAGCCAGGACTCGAGCTCCGACGACG
CGTACCGCGGAGGCAAGGACCGCTCGCCGTCGCGTCGCAAGAAGTCCGACGAAGACGAGGAGGAGTACCGCCCATACGCA
GGCTACGGCGCCAACACCAACCGTGGCGGGGCCAACGAAGGCGGT---------GGCGGCTACAACGGTGGTTACGGCGG
CGGGGGCGGCGGCTACAACAACGGCTACGGCGGCGGTGGCGGTGGCTCGTACAGCAACGGCAACGGCGGTATCACGCCCT
ACAACGGCGGCGGTGGCGGCTACAACAGCAACTCTTCCTACGGCAACGGCGGCGGTGGCTACAACAACAACTCCTCCTAC
GGCAACGG---CGGCGGCGACGGGTACAACAACGCTCCCAGCTGGGCTTCCCAGGACCCCGCCGGCCGGACTCCGATGTA
CATAAACACCAGGGAGGTCCACGTCTATGGGGCGCCACAGAACGACGACGACTACAACGGCGACCAGAAGAGGCGTG---
GCGGCGGCGGCGGGGGCAGCGGGTTCTTCGGTCCGGCCTTCCATGCGGTCGGCCATTTCGTCGATCGCAGGTTCGGCCTC
GACGACAGGAACTGA-----------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------
>chr3B_1_TraesCS3B01G456900
AATGTAATGTGAGTAAGTTGACCCCATTTTTCTAGCCAGAGAGCACGAAAGAGGTACTCCACTACTTCTGGTTCTAGACC
ACGACAGTGGAGTATTCTTTTACTGCTGGAGTAGTGTAATTTACTTGATTAGTTAGATATTTAACAGGCCGGCAGGTAAT
GGCCTGGCTAATGGGATAAGGATGATTGTAGT----TGCGGTCACTGACCATAGATAGGTTGCAACTTGCAAGGCGCAGT
ACTTACCACATAGTGATAGTGACATACACCACCCATGCCGCCACACATACCGGTCCATAATACACCACA-----------
-------------------TACGGCGAAGATCTATCGCCCTGCCCACTTTGAATTAAAAAGAATTGATGAATTAACTACA
ACATGTGAAGCTTCGTGTATGGTTCCTACATGTATGCAAGTCTCCTAAGTAGCTCCTTCCACTTGGCAACTAGTGCTGAT
GATGCTCTTTAATTTAGCTGCGTACGTACCCTTCAGGACGTCATTAACCCACATGCGCGCAGTTACAAGGGAAAATGAGG
TTAGGTTCTCTGAGGAAGTAATCAAAAGAGCACTTTCTTTATTGCACAAATGATGACCTCTGTTGGATAGACACAGTTGG
CTTGAACGGTTGTGCCACTATATAAACGGTGCCTGCAGGCTCAAGGCTACATACCAGGCTTGAGAAGTGCAAGGCCAACA
ACCACTTTATTGTCTGGTATGCTCCAAAAGCT-AGCCTCCTCCTTGATTGT-TTTCCACTTTGTGTTCACTTTTCACTGT
GCTGGTTTAGCTAAATATCTTCATGATATCTACTAACTGTTCATCAACAGTTAGTTAGCTTCAGTAATTAGAAGTCCTAA
GATGCAGTACTAGAGTT-----TTTTGTTAACTAATAGCACAAGTTTTATGTGT---------------TTTCCGACCGA
TCGATGCATGATTCCTGGGTCTAACTGAAGTTAATTTGGGCGTAGCATAAGCATACAGGGAAAAGAAGAGGAATTAAGCT
CCAAGACTTGGAGGCGATGTCGTGGTGGAAGTCCAAGTCGCACTTCAGCGCCGACAGCCAGGACTCGAGCTCCGACGACG
CGTACCGCGGAGGCAAGGACCGCTCGCCGTCGCGTCGCAAGAAGTCCGACGAAGACGAGGAGGAGTACCGCCCATACGCA
GGCTACGGCGCCAACACCAACCGTGGCGGGGCCAACGAAGGCGGT---------GGCGGCTACAACGGTGGTTACGGCGG
CGGGGGCGGCGGCTACAACAACGGCTACGGCGGCGGTGGCGGTGGCTCGTACAGCAACGGCAACGGCGGTATCACGCCCT
ACAACGGCGGCGGTGGCGGCTACAACAGCAACTCTTCCTACGGCAACGGCGGCGGTGGCTACAACAACAACTCCTCCTAC
GGCAACGG---CGGCGGCGACGGGTACAACAACGCTCCCAGCTGGGCTTCCCAGGACCCCGCCGGCCGGACTCCGATGTA
CATAAACACCAGGGAGGTCCACGTCTATGGGGCGCCACAGAACGACGACGACTACAACGGCGACCAGAAGAGGCGTG---
GCGGCGGCGGCGGGGGCAGCGGGTTCTTCGGTCCGGCCTTCCATGCGGTCGGCCATTTCGTCGATCGCAGGTTCGGCCTC
GACGACAGGAACTGATCGATCACGCCCATATATATGGCTGAATGCGCTGGTCATGCAGATATGCATGGATGCTGGCGACG
ATCGATCGAGTACTACACTACTACTA---------------CTACTACTACGTGCTGTGATGTGTGTCTTGGATAGTTTC
CAGGTGTACCAGTGATA---TGCTTCAGTTCTGCGCAGTGATGTGTGTGTT--GTTTGTGTTGCATCGTGTACAACATGA
TTTTATCATGCAGATGTTGTATATGTATATATGTACGCAACTTAATTACTTCTTGTTCTCTCT-----AAAAAAAACTTA
GGTTACTTCTTGTAATTGCATGCAGATACACGGCAACTATGATTTCACT-------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------CTCCAATAGTTGTTTCCATGCTGAGTGTAACTCATGTGTCCTTCGTAAAAATCCTACTCCTTTGAGAACCA
AGCGCTGCCTTGGATGGCTACAGCTTATCGGGTGCAAGCTCGCCCGCCCATGTTTGATCCGCGGGGAGGTCTCATTTCTA
CCTTTAACGACATTTTATAGTTTGTCATAGACAAGCAAAATATCCCAAAATTTATTGGAAAATTCATCGATATTAGCAAA
TGACTCCCCATCAATTGCTGCAAGATATAAATATACATGGTGTTTAGACATGTTACAGTCCTCAAGATGTAATTCTGATG
ACTGCTTTACATATAAATATCATAGTAAGTGCAATACAAAGAAACACAACATCATTTAAATTTCAACAATCTTTTTTTGC
GTAGTAATACGTGTCTCATTAATAAAATAAAGATTCACTTACAAGCCACATAAACATCCACGTTACATGATTGAAAAGAT
AGGATAATCCTATGCAAAAAAAAAACAGCGTCTGTCCCTCTCCACTAAGGAAAATGAGACATATCACCTCTTCACCAGAG
CTCGACGCGGCTCCATCATTGATCAGCAGCTTTACGGACCTCCAAAGTAGTTTGCCTGAAGCAAAACCATTGTTGTTGAA
AGAATCAGATCGGGACAACGTGTCCCCGGACATGCCATCG
>chr3D_2
-ATGTAATGTGAGTAAGTTGACCCCATTTTTCTAGCTAGAGAGCACGAAAGAGGTACTCCACTACTTCTGGTTCTAGACC
ACGACAGTGGAGTATTCTTT-ACTGCTGGAGTAGTATAATTTACTTGATTAGTTAGATATTTAACAGGCCAGCAGGTAAT
GGCGAGGCTAATGGGATAAGGATGAGTGTAGG----AGTGGTCAGTGACCATAGATAGGTTGCAACTTGCAAGGTGCAGT
ACTTACCACATAGTGATAGTGACATACACCACCCATGCTGCCACACATACCGGTCCATAATACACCACA-----------
-------------------TACGGCGAAGATCTATCGCCCTGCCCACTGTGAATTAAAAATAATGGATGAATTAACTACA
ACATTTGAAGCTTCGTGTATGGTTCCTACATGTATGCAAGTCTTCTAAGTAGCTCCTTCCACTTGGCAACTAGTGTTGAT
GATGCTCTTTAATTTAGCTGCGTACGTACCCTTCAGGACGTCATTAACCCACATGCACGCAGTTACAAGGGAAAATGAGG
TTAGGTTCTCTGAGGAAGTAATCAAAAGAGCACTTCTTTTATTGCACAAACGATGACCTCTGTTGGATAGACACAGTTGG
CTTGAACGGTTGTGCCACTATATAAACGGTGCCTGCAGGCTCAAGGCTACATACCAGGCTTGAGAAGTGCAAGGCCAGCA
TCCACTTTATTGTCTGGTATGCTCCAAAAGCT-AGCCTCCTCCTTGATTGTTTTTCCACTTTGTGTTCACTTTTCACTGT
GCTGGTTTAGCTAAATATCTTCATAATATCTACCAACTGTTCATCAGCAGTTGGTTAGCTTCAGTAATTAGAAGTCCTAA
GATGTAGTAAGTACCAGTAGAGTTTTCTTAACTGATTTCAGAAGTTTTGTGTGT--GTTGCTCGACCGCTTTCCGTCCGA
TCGATGCATGATTCCTCGATCTAATTGAAGTTCATTTTGGTGTAGCATAG-----CAGGGATAAGAAGAGGAATTAAGCC
CCAAGAGTTGGAGGCGATGTCGTGGTGGAGGTCCAAGCCGCACTTCAGCGCCGACAGCCAGGACTCGAGCTCCAACGACG
CGTACCGCGGAGGCAAGGACCGCTCGCCGTCGCGTCGCAAGAAGTCCGACGACGACGAGGAGGAGTACCGCCCATACGCA
GGCTACGGCGCCAACACCAACCGCGGCGGGGCCAACGAAGGCGGTGGCGGCGGCGGCGGCTACAACGGTGGTTACGGCGG
CGGGGGCGGCGGCTACAACAACGGCTACGGCGGCGGTG------GCTCGTACAGCAACGGCAACGGCGGTATCACGCCCT
ACAACGGCGGCGGCGGTGGCTACAACAGCAACTCTTCCTACGGAAACGGCGGCGGTGGGT---ACAACAACTCTTCTTAC
GGCAACGGCAACGGCGGCGACGGGTACAACAACGCTCCCAGCTGGGCATCCCAGGACACCGGCGGCCGGACGCCGATGTA
CATAAACACCAGGGAGGTCCACGTCTATGGGGCGCCGCAGAACGACGACGACTACAACGGCGACCAGAAGAGGCGTGGTG
GCGGCGGCGGCGGGGGCAGCGGGTTCTTCGGTCCGGCCTTCCATGCCGTCGGCCATTTCGTCGATCGTAGGTTCGGCCTC
GACGACAGGAACTGATCGATCACGCCCATATATATGGCTGATTGCGCTGGCCATGCAGATAGGCATGGATGCTGACGA--
--CGATCGAGTACTACACTACTACTA---------------CGTGCTGTTA-----------TGTGTCTTGGATAGTTTC
CAAGTGTACCAGTGATGATGTCCTTCAGTTCTGCGCAGTGATGTGTGTGTGTGGTTTGTGTTGCATCGTGTACAACATGA
TTTTATCACGCAGATGTTGTATATGTATATATGTACGCAACTTAATTACTTCTTGTTCTCTCTCTCAAAAAAAAAAACTT
GGTTACTTCTTGTAATTGCATGCAGATACATATGGCAACTTATGGTTT--------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------
>chr3A_27
--------------------------TTTTTTTAGCCAGGGAGCACGAAAGAGGTACTCCACTACTTCTGGTTCTAGACC
ACGACAGTGGAGTATTCTTTTACTGCTGGAGTAGTATAATTTACTTGATTAGTTAGATATTTAACAGGCCGGCAGGTAAT
GGCCAGGCTAATGGGATAAGGATGAGTGTAAGGAGTAGTGGTCAGTGACCATAGATAGCTTGCAACTTGCAAGGCGCAGT
ACTTACCACATAGTGATAGTGACATACACCACCCATGCTGCCACACATACCGGTCCATAATACACCACAATGCTTCCTCA
AGAAAAAAAATACACCACATACGGCGAAGATCTATCGCCCTGCCCACTTTGAATTAAAAGGAATTTATGAATTAACTACA
ATGTGTGAAGCTTCGGGTATGGTTCCCACATGTATGCAAGTCTCCTAAGTAGCTCCTTCCACTTGGCAACTAGTGCTGAT
GATGCTCTTTAATTTAGCTGCATACGTACCCTTCAGGACGTCATTAACCCACATGCACGCAGTTACAAGGGAAAATGGGG
TTAGGTTCTCTGAGGAAGTAATCAAAAGAGCACTTTTTTTATTGCACAAACGATGACCTTTGTTGGATAGACACGGTTGG
CTTGAACGGTTGTGCCACTATATAAACGGTGCCTGCAGGCTCAAGGCTACAT---AGGCTTGAGAAGTGCAAGGCCAGCA
ACCACTTTATTGTCTGGTATGCTCCAAAAGCTTAGCCTCCTCCTTGATTGTTTTTCCGCTTTCTGTTCACTTTTCACTGT
GCTGGTTTAGCCAAATATCTTCATAATATCTACTGACTGTTCATCAACAGTTGGTTAGCTTCAGTAATTAGAAGTCCTAA
GATGTA-------CCAGTAGAG-TTTCTTAACTAATTTCAGAAGTTTTGTGTGTGAGTTGCTCGACCACTTTCCGTCCGA
TCGATGCATGATTCCTCGATCTAATTGAAGTTCATTTTGGTGTAGCGTAG-----CACGTATAAGAAGAGGAATTAAGCC
CCAAGAGTTGGAGGCGATGTCGTGGTGGAAGTCCAAGTCGCACTTCAGCGCCGACAGCCAGGACTCGAGCTCCGACGGCG
CGTACCGCGGAGGTAAGGAACGCTCGCCGTCACGTCGCAAGAAGTCCGACGAAGACGAGGAGGAGTACCGCCCCTACGCA
GGCTACGGCGCCAACACCAACCGCGGCGGGGCCAACGAA---------------------------------------GG
CGGGGGCGGCGGCTACAACAACGGCTACGGCGGCGGTG------GCTCGTACAGCAACGGCAACAGCGGTATCACGCCCT
ACAA---CGGCGGCGGTGGCTACAACAGCAACTCTTCCTACGGCAACGGCGGCGGTGGCTACAACAACAACTCTTCCTAC
GGCAACGGCAACGGCGGCGACGGGTACAACAACGCTCCCAGCTGGGCATCCCAGGACACCGGCGGCCGGACGCCGATGTA
CATAAACACCAGAGAGGTCCACGTCTATGGGGCGCCGCAGAACGACGACGACTACAACGGCGACCAGAAGAGGC---GTG
GCGGCGGCGGCGGGGGCAGCGGGTTCTTCGGTCCGGCCTTCCATGCCGTCGGCCATTTCGTCGATCGCAGGTTCGGCCTC
GACGATAGGAACTGATCGATCACGCCCATATATATGGCTGATTGCGCTGGCCATGCAGATATGCATGGATGCTCGCGA--
--CGATCGACTACTACACTACTACTACTACTACTACTACTACGTGCTGTGA-----------TGTGTCTTGGATAGTTTC
CAAGTGTACCAG---TGATGTGCTTCAGTTCTGCGCAGTGATGTC--TGTGTGGTTTGTGTTGCATCGTGTACAACATGA
TTTTATCATGCAGATGTTGTATATGTATATATGTACGCAACTTAATTACTTCTTGTTCTCTCTCAG----AAAAAAACTT
GGTTACTTCTTGCATGCACATACTCC-----ATGGCAACTTATGATTTTCCTGTAATGATGTGGTCCTCTTTTTTTATCT
TATGGCAATAAAAAAGTCCATCTAAGTGCACATATTAAGTGGAAAAGCAAAATTTCTTGTATAATGAATTATTTTAAGTT
TGTCAGATGTAGAATTGCTCAAATTTGGAGCACCAAAATTTCTGTATTGGGCTTTCTTCCTTGTTTCCTTTTCATTTCAT
TCCATTCAATTTGGTTGTCTCTTCCGGGGGCTTATGATGAGCATATATTGCAGTTTATCATATTATTCCAATATCTTATT
CTATTTCATATTGTGTACAGGAATTTATAACCCACCTAATTTCAGCCAAAAATCCTTTCTCAGGGTGTCATTATATTTCT
TGATGTGGACTCCAATTGTTGCTTCCATGCTGAGTGTAATTCACACATTCTTCATAAAAATCCTACTC-TTTGAGATCCA
ACCGCTGCCATGGATAGCTAGAGCTTA-CGGGTGCAAGTTCGCCCACCTGTGTTTGATCGGCGGGGAGATTTTTTTTCTA
CCTTTAACTACATTTTATAGTTTGTCATAGACAACCACAATAGCCCAAAACTTATTGGAAAAATCATCAATATTAGCAAA
ATACTCCCCGTCAATTGCCGCAAGATATAAACATACGCGGTGTTTAGACATGTTACGGTCCTCAAGATGTAATTCTGATG
ATTGCTTTACGTATAAATATCATAGTAAGTGCAATACAAAGAAACACAAGATACTTTTAATTTCACCAA-----------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------
>SNPs
S-------------------------------------------------------------------------------
-----------------------------------S--------------------------------------------
----S--------------------S-----S----S-S-----S-----------------------------------
--------------------------------------S-----------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------S-----------------------
------------------------------------S-------------S-----------------------------
-----------------------------------------------------------------------------S--
--------------------------------------------------------------------------------
------------------------S---------------------------S---------------------------
----S----SSSSSSSS---------S---------SS--S-------S--------------------------S----
----------------S-S-----S-------S----S--S--------SSSSSS------S-----------------S
------S-------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------S--------------------------------------------------------
--------------------------------------SSSSSS------------------------------------
-------------S--S--------------------------------------------------------S------
-----------------------------------------------S---------S---S---------S--------
------------------------------------S-------------------------------------------
----------------------------------------------S---------------------------------
-----------------------------------------S--------S---------------------------SS
SS----------------------------------------SSSSSS-SSSSSSSSSSSSS------------------
--S-------------S---------------------------------S-----------------------------
----------------------------------------------------------------------------SS-S
------------------------------SSSSSSSSS-S--SSSSS--------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------S----S-----------------S---SSSS-S----S--------------S-------S---
-S-------S-----S----S------S----------S------S--SS---------S--------S-S-SS------
--------S-------------------------S--S----S-------S-----------S-----S-----------
SS-------S--------S------------S----SS------------------S-----------------------
-S--------S--------------------------------------S--SS---S-------S---SSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_279
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------TGACATACACCACCCATGCC-----------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------
>reverse_1810
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------ACGTGCTGTGATGTGTGTCT-----------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------
