>input_sequence_73705
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--------------------------------------------------------------ATGGCGGCGGCGATGAGG
CTCGGCGGCGGCGCTCTTCTCCGGCGGACGCCTGTGGCGGAGGCAAGGCGGCGCCTCGCCCACACGACCGCGGAGGAGAT
GAGAGAGGTGGCGACCCGCGCGGCGCAAATCGACAAGACCAAGGAGGAGCTGTTCGACATGGTCATTGACCTCAATAGCA
ACTACAACGTTCCCCACAGCATGAAACGGAAGCACTTGCTCCTCTCGCAGCGCCTCTCCTCACAAATCCAGCCTAGACCA
TACGACCCAGCCTGGTAACAACTACTCCCTACTTACTGCTGCTGCACTATCTATC---TACTTATTATTTATTTGGATTT
ACACATATTCATACTATGTATTGTTTGCTTTTAGATTTGTCTCTA-ATAGATTTATACATTACATATA-----------T
CTGGCCTGGTCTGGTCTTTGAGAACTCATCTCATCTGTATTGTGTTGTTGTACCGTAGGCGTTTCTGTCGACGTACCGAA
AGACGCAATACTTTCTACAAGTTTGTGGGGGTGGCTACTTGTGACCTTGTCGGCTCAGCCGGCCTCTTCTTGCTCCTACA
CGGACCTCATCATCGACCAAAGAAGTGGGTTGTCGACTGGTGGGACAAGCTAACCAGTTAG-------------------
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>chr1D_1_TraesCS1D01G450500
GAAATAACATGCAACATAAGAACCCTAGCTTCTGGCCGAAATCCCCAACCTCACAGCCCAAAACCCTTCACTGAAATCAC
CGCCCAAAGCACTTGCTTTACGTCGCGGGAAGCACTATAGCCACAAGCTTCCACCATACAGACCTGAATCGCTCTCCAAA
CAGACCGGTCTGTCGGTGGTGCGGACAACACTGGAGGAGGAGGAATGCAGCGGAGGAACAAAGCAGAGGAGGAGGACGCA
CCAAAATCGGGAGGGGAAGACACCGTGCGGGCGAACTTGGTGAGCGGAAGGAGGCGGCTGCAGACCGGTGGTGAGCTCCG
GTGACGTCGCCATGGATGCTGACGTAAGGTAGCAGCCAATGAGAGCGGACGGCGACACCCAGACAAAGGAGAAGTGGACG
ACCGAGCGAATGATTGAGGGAGACAAAATCAATTCAAGTGGTATATCCTTCGACGGCCACGAGGTGTCATGTAGGTTCAA
ATCTAGGAACGGCAGGGGGCTAAATGCAAAAAGTATAGCGCTGACCGGCTCGGCCCAGCTGGCTCCACTTGGCTGCTCGT
AATTGGCCCAAGACCAAATGTGCACATATGTGACAAGTTTTAGGACCAAATAATTACGTTTTGCAGGTTTTAGGACCAAA
CCGTCAGGACAAGGTCTAGGACGGGGTGCTATTACCCAAAAAAAAAAGGTGGATCGTGCACGTGGGCCGGGCCTTGTGCT
GGTGTATAACCAACCCAGAGAAGAGGCCCTCCCACAAGAAGAAAAAGAAAAAGGGAAAACAGCTAACCGCGGCGAGCAAG
GAACCCTAATCGTCAATCGATCGATCGATCGATCTCCCAGATTGATCCTCGAGGTAACTCGATCTGTCCCGTTTTCGTGG
TGGAGACGGACTCTGATTAAGCATCATCCCTATTTCCTCTGATCTGATATATATAGATCGACCAGACCAGACCAGACCAG
ACCAGACC------AGAGGACCCGGCAG----AAGCAGAACAAGAAATCG------------ATGGCGGCGGCGATGAGG
CTCGGCGGCGGCGCTCTTCTCCGGCGGACGCCTGTGGCGGAGGCAAGGCGGCGCCTCGCCCACACGACCGCGGAGGAGAT
GAGAGAGGTGGCGACCCGCGCGGCGCAAATCGACAAGACCAAGGAGGAGCTGTTCGACATGGTCATTGACCTCAATAGCA
ACTACAACGTTCCCCACAGCATGAAACGGAAGCACTTGCTCCTCTCGCAGCGCCTCTCCTCACAAATCCAGCCTAGACCA
TACGACCCAGCCTGGTAACAACTACTCCCTACTTACTGCTGCTGCACTATCTATC---TACTTATTATTTATTTGGATTT
ACACATATTCATACTATGTATTGTTTGCTTTTAGATTTGTCTCTA-ATAGATTTATACATTACATATA-----------T
CTGGCCTGGTCTGGTCTTTGAGAACTCATCTCATCTGTATTGTGTTGTTGTACCGTAGGCGTTTCTGTCGACGTACCGAA
AGACGCAATACTTTCTACAAGTTTGTGGGGGTGGCTACTTGTGACCTTGTCGGCTCAGCCGGCCTCTTCTTGCTCCTACA
CGGACCTCATCATCGACCAAAGAAGTGGGTTGTCGACTGGTGGGACAAGCTAACCAGTTAGAATCCATCCATCCATGCCC
TGCTTCAACAACATATACTAG----CTAGAATGCCAACAAGACTAGCTTCCTTGTCATGAGGTTTATGTTAATTAGCTTT
GCTTGGCCACCAATTAAGTGCTATTATATGT------------------TTTTTGTCCAACGATTTGTACT---------
------------CGTATTTATACCAGAGCTATGCTAGGTGTGCAACTGCTTTAC--------------------------
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----TACTCAACAAATGTTGCCTCTTCCAATGACGAGCCATACGACTCTTTCGAATTCTGTAAACATCAAGTATGAAGTC
AGTGTATCAGAACTTCCTCATCGGAACACCAGCTGCTGGTTTGCCTAGCTGAAATTGCGTAAGGGCCATCAGTCTCTTGT
TCTACTTTACCATGTGGGCAAATGAAAAATGTTCTACACTCACATAACA--------GATAGTTTTACTCTGAAGTTACA
CACTAAAGAGTGTCTAGTATTCCCTCTGTGAAGAAATATAAGAGCATTTAAATCACTAAAGTAGCTAGTGATCTAAACAC
TCTTATATTTCCTTTCTGAGGGAGTACATTGCAATGC---GGTACATCTAGCTCTATGCTCATTCCACTTGGGAAACACT
GTAAAAGATCCAATGAAATCAGACACCCTCCCCAAATTTTGTCTCGGATATGGACTGATTATGAAC---CTGCACAAGCA
TGTTTTGAGAGCACAAAACAGAAGCAAGGTAAACAAGCAAATCCGTGAATATTATTCCATTATTGCACATTTAAATCTGT
ACAAAACCCTGACGAGCCCTTGGCGGCTGGTGGAGAAGTTCCGGGCGTACTTCGACACTTGAGGAAGGTCGTGCGTATGA
TGATGAGAATAAAAGGATTTCTAGTAATTTCGATATAGTAACATAATGTTGGATCCAGTCCTTTTGAATTGTCAGTTTGT
CCATCATGATTTTTGGGAAGAGACATTGGCAATAATTCACCTTGGACAATTTATTTATGAAAAAATTGTATGTCTATTTA
AATCGCACATAAAAAAAA-TCTCAGCACC
>chrUn_1
GAAATAACATGCAACATAAGAACCCTAGCTTCTGGCCGAAATCCCCAACCTCACAGCCCAAAACCCTACACTGAAATCAC
CGCCCAAAGCACTTGCTTTACGTCGCGGGAAGCACTATAGCCACAACCTTCCACCATACAGACCTGAATCGCTCTCCAAA
CAGACCGGTCCGTCGGTGGTGCGGACAACACTGGAGGAGGAGGAATGTAGCGGAGGAACAAAGCAGAGGAGGACGACGCA
CCAAAATCGGGA-GGGAAGACACCGTGCGGGCGAACTTGGTGAGCGGAAGGAGGCGGCTGCAGACCGGCGGTGAGCTCCG
GTGACGTCGCCATGGATGCTGACGTAAGGTAGCAGCCAATGAGAGCGGACGGCGACACCCAGACAAAGGAGAAGTGGACG
ACCGAGCGAATGATTGAGGGAGACAAAATCAATTCAAGTGGTATATGCTTCGACGGCCACGAGGTGT-------------
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-----------------------------TCGACAAGACCAAGGAGGAGCTGTTCGACATGGTCATTGACCTCAATAGCA
ACTACAACGTTCCCCACAGCATGAAACGGAAGCACTTGCTCCTCTCGCAGCGCCTCTCCTCACAAATCCAGCCTAGACCA
TACGACCCAGCCTGGTAAATACTACTCCCTACTTACTGCTGCTGCACTATCTATC---TACTTATTATTTATTTGGATTT
ACACATATTCATACTATGTATTGTTTGCTTTTAGATTTGTCTCTA-ATAGATTTATACATTACATATA-----------T
CTGGCCTGGCCTGGTCTTTGAGAACTCATCTCATCTGTATTGTGTTGTTGTACTGTAGGCGTTTCTGTCGACGCACCGAA
AGACGCAATACTTTCTACAAGTTTGTGGGGGTGACTACTTGTGACCTTGTCGGCTCAGCCGGCCTCTTCTTGCTCCTACA
CGGACCTCATCATCGACCAAAGAAGTGGGTTGTCGACTGGTGGGACAAGCTAACCAGTTAGAATCCATTTATCCATGCCC
TGCTTCAACAACATATACTAG----CTAGAATGCCAACAAGACTAGCTTCCTTGTCATGAGGTTTATGTTAATTAGCTTT
GCTTGGCCACCAATTAAGTGCTATTATATGT------------------TTTTTGTCCAACGGTTTGTACT---------
------------CGTATTTATACCAGAGCTATGCTAGGTGTGCAACTGCTTTAC--------------------------
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----TACTCAACAAATGTTGCCTCTTCCAATGACGAGCCATACGACTCTTTCGAATTCTGTAAACATCAAGTATGAAGTC
AGTGTATCAGAACTTCCTCATCGGAACACCAGCTGCTGGTTTGCCTAGCTGAAATTGCGTAAGGGCCATCAGTATCTTGT
TCTACTTTACCATGTGGGCAAAAGAAAAATGTTCTACACTCACATAACA--------GATAGTTTTACTCTGAAGTTACA
CACTAAAGAGTGTCTAGTATTCCCTCTGTGAAGAAATATAAGAGCATTTAAATCACTAAAGTAGCTAGTGATCTAAACAC
TCTTATATTTCCTTTCTGAGGGAGTACATTGCAATGC---GGTACATCTAGCTCTATGCTCATTCCACCTGGGAAACACT
GTAAAAGATCCAATGAAATCAGACACCCTCCCCAAATTTTGTCTCGGATATGGACTGATTATGAAC---CTGCACAAGCA
TGTTTTGAGAGCACAAAACAGAAGCAAGGTAAACAAGCAAATCCGTGAATATTATTCCATTATTGCACATTTAAATCCGT
ACAAACCCCTGACGAGCCCTTGGCGGCTGGTGGAGAAGTTCCGGGCGTACTTCGACACTTGAGGAAGGTCGTGCGTATGA
TGATGAGAATAAAAGGATTTCTAGTAATTTCGATATAGTAACATAATGTTGGATCCAGTCCTTTTGAATTGTCAGTTTGT
CCATCATGATTCTTGGGAAGAGACATTGGCAATAATTCACCTTGGACAATTTATTTATGAAAAAATTGTATGTCTATTTA
AATCGCACATAAAAAAA--TCTCAGCACC
>chrUn_1
GAAATAACATGCAACATAAGAACCCTAGCTTCTGGCCGAAATCCCCAACCTCACAGCCCAAAACCCTNNNNNNNNNN---
-------------------ACGTCGCGGGAAGCACTATAGCCACAACCTTCCACCATACAGACCTGAATCGCTCTCCAAA
CAGACCGGTCCGTCGGTGGTGCGGACAACACTGGAGGAGGAGGAATGTAGCGGAGGAACAAAGCAGAGGAGGACGACGCA
CCAAAATCGG-A-GGGAAGACACCGTGCGGGCGAACTTGGTGAGCGGAAGGAGGCGGCTGCAGACCGGCGGTGAGCTCCG
GTGACGTCGCCATGGATGCTGACGTAAGGTAGCAGCCAATGAGAGCGGACGGCGACACCCAGACAAAGGAGAAGTGGACG
ACCGAGCGAATGATTGAGGGAGACAAAATCAATTCAAGTGGTATATGCTTCGACGGCCACGAGGTGT-------------
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-----------------------------TCGACAAGACCAAGGAGGAGCTGTTCGACATGGTCATTGACCTCAATAGCA
ACTACAACGTTCCCCACAGCATGAAACGGAAGCACTTGCTCCTCTCGCAGCGCCTCTCCTCACAAATCCAGCCTAGACCA
TACGACCCAGCCTGGTAACAACTACTCCCTACTTACTGCTGCTGCACTATCTATC---TACTTATTATTTATTTGGATTT
ACACATATTCATACTATGTATTGTTTGCTTTTAGATTTGTCTCTA-ATAGATTTATACATTACATATA-----------T
CTGGCCTGGCCTGGTCTTTGAGAACTCATCTCATCTGTATTGTGTTGTTGTACCGTAGGCGTTTCTGTCGACGCACCGAA
AGACGCAATACTTTCTACAAGTTTGTGGGGGTGACTACTTGTGACCTTGTCGGCTCAGCCGGCCTCTTCTTGCTCCTACA
CGGACCTCATCATCGACCAAAGAAGTGGGTTGTCGACTGGTGGGACAAGCTAACCAGCTAGAATCCATCCATCCATGCCC
TGCTTCAACAACATATACTAG----CTAGAATGCCAACAAGACTAGCTTCCTTGTCATGAGGTTTATGTTAATTAGCTTT
GCTTGGCCACCAATTAAGTGCTATTATATGT------------------TTTTTGTCCAACGATTTGTACT---------
------------CGTATTTATACCAGAGCTATGCTAGGTGTGCAACTGCTTTAC--------------------------
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----TACTCAACAAATGTTGCCTCTTCCAATGACGAGCCATACGACTCTTTCGAATTCTGTAAACATCAAGTATGAAGTC
AGTGTATCAGAACTTCCTCATCGGAACACCAGCTGCTGGTTTGCCTAGCTGAAATTGCGTAAGGGCCATCAGTCTCTTGT
TCTACTTTACCATGTGGGCAAAAGAAAAATGTTCTACACTCACATAACA--------GATAGTTTTACTCTGAAGCTACA
CACTAAAGAGTGTCTAGTATTCCCTCTGTAAAGAAATATAAGAGCATTTAAATCACTAAAGTAGCTAGTGATCTAAACAC
TCTTATATTTCCTTTCTGAGGGAGTACATTGCAATGC---GGTACATCTAGCTCTATGCTCATTCCACCTGGGAAACACT
GTAAAAGATCCAATGAAATCAGACACCCTCCCCAAATTTTGTCTCGGATATGGACTGATTATGAAC---CTGCACAAGCA
TGTTTTGAGAGCACAAAACAGAAGCAAGGTAAACAAGCAAATCCGTGAATATTATTCCATTATTGCACATTTAAATCTGT
ACAAAACCCTGACGAGCCCTTGGCGGCTGGTGGAGAAGTTCCGGGCGTACTTCGACACTTGAGGAAGGTCGTGCGTATGA
TGATGAGAATAAAAGGATTTCTAGTAATTTCGATATAGTAACATAATGTTGGATCCAGTCCTTTTGAATTGTCAGTTTGT
CCATCATGATTCTTGGGAAGAGACATTGGCAATAATTCACCTTGGACAATTTATTTATGAAAAAATTGTATGTCTATTTA
AATCGCACATAAAAAAAA-TCTCACCACC
>chrUn_340
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-------------------TGACGTAAGGTAGCAGCCAATGAGAGCGGACGGCGACACCCAGACAAAGGAGAAGTGGACG
ACCGAGCGAATGATTGAGGGAGACAAAATCAATTCAAGTGGTATATCCTTCGACGGCCACGAGGTGTCATGTAGGTTCAA
ATCTAGGAACGGCAGGGGGCTAAATGCAAAAAGTATAGCGCTGACCGGCTCGGCCCAGCTGGCTCCACTTGGCTGCTCGT
AATTGGCCCAAGACCAAATGTGCACATATGTGACAAGTTTTAGGACCAAATAATTACGTTTTGCAGGTTTTAGGACCAAA
CCGTCAGGACAAGGTCTAGGACGGGGTGCTATTACCCAAAAAAAAAAGGTGGATCGTGCACGTGGGCCGGGCCTTGTGCT
GGTGTATAACCAACCCAGAGAAGAGGCCCTCCCACAAGAAGAAAAAGAAAAAGGGAAAACAGCTAACCGCGGCGAGCAAG
GAACCCTAATCGTCAATCGATCGATCGATCGATCTCCCAGATTGATCCTCGAGGTAACTCGATCTGTCCCGTTTTCGTGG
TGGAGACGGACTCTGATTAAGCATCATCCCTATTTCCTCTGATCTGATATATATAGATCGACCAGACCAGACCAGACCAG
ACCAGACC------AGAGGACCCGGCAG----AAGCAGAACAAGAAATCG------------ATGGCGGCGGCGATGAGG
CTCGGCGGCGGCGCTCTTCTCCGGCGGACGCCTGTGGCGGAGGCAAGGCGGCGCCTCGCCCACACGACCGCGGAGGAGAT
GAGAGAGGTGGCGACCCGCGCGGCGCAAATCGACAAGACCAAGGAGGAGCTGTTCGACATGGTCATTGACCTCAATAGCA
ACTACAACGTTCCCCACAGCATGAAACGGAAGCACTTGCTCCTCTCGCAGCGCCTCTCCTCACAAATCCAGCCTAGACCA
TACGACCCAGCCTGGTAACAACTACTCCCTACTTACTGCTGCTGCACTATCTATC---TACTTATTATTTATTTGGATTT
ACACATATTCATACTATGTATTGTTTGCTTTTAGATTTGTCTCTA-ATAGATTTATACATTACATATA-----------T
CTGGCCTGGTCTGGTCTTTGAGAACTCATCTCATCTGTATTGTGTTGTTGTACCGTAGGCGTTTCTGTCGACGTACCGAA
AGACGCAATACTTTCTACAAGTTTGTGGGGGTGGCTACTTGTGACCTTGTCGGCTCAGCCGGCCTCTTCTTGCTCCTACA
CGGACCTCATCATCGACCAAAGAAGTGGGTTGTCGACTGGTGGGACAAGCTAACCAGTTAGAATCCATCCATCCATGCCC
TGCTTCAACAACATATACTAG----CTAGAATGCCAACAAGACTAGCTTCCTTGTCATGAGGTTTATGTTAATTAGCTTT
GCTTGGCCACCAATTAAGTGCTATTATATGT------------------TTTTTGTCCAACGATTTGTACT---------
------------CGTATTTATACCAGAGCTATGCTAGGTGTGCAACTGCTTTAC--------------------------
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----TACTCAACAAATGTTGCCTCTTCCAATGACGAGCCATACGACTCTTTCGAATTCTGTAAACATCAAGTATGAAGTC
AGTGTATCAGAACTTCCTCATCGGAACACCAGCTGCTGGTTTGCCTAGCTGAAATTGCGTAAGGGCCATCAGTCTCTTGT
TCTACTTTACCATGTGGGCAAAAGAAAAATGTTCTACACTCACATAACA--------GATAGTTTTACTCTGAAGCTACA
CACTAAAGAGTGTCTAGTATTCCCTCTGTAAAGAAATATAAGAGCATTTAAATCACTAAAGTAGCTAGTGATCTAAACAC
TCTTATATTTCCTTTCTGAGGGAGTACATTGCAATGC---GGTACATCTAGCTCTATGCTCATTCCACCTGGGAAACACT
GTAAAAGATCCAATGAAATCAGACACCCTCCCCAAATTTTGTCTCGGATATGGACTGATTATGAAC---CTGCACAAGCA
TGTTTTGAGAGCACAAAACAGAAGCAAGGTAAACAAGCAAATCCGTGAATATTATTCCATTATTGCACATTTAAATCTGT
ACAAAACCCTGACGAGCCCTTGGCGGCTGGTGGAGAAGTTCCGGGCGTACTTCGACACTTGAGGAAGGTCGTGCGTATGA
TGATGAGAATAAAAGGATTTCTAGTAATTTCGATATAGTAACATAATGTTGGATCCAGTCCTTTTGAATTGTCAGTTTGT
CCATCATGATTCTTGGGAAGAGACATTGGCAATAATTCACCTTGGACAATTTATTTATGAAAAAATTGTATGTCTATTTA
AATCGCACATAAAAAAAAATCTCACCACC
>chr1A_922
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-----------------------------------------ATCTGATATACATAGATCGACCAGACGT--CCAGACCAG
ACCAGGAAGACCAGAGAGCATCCGGCATAAATAAACATAACAAGAAATCGATGGCGATGGCGATGGCGGCGGCGATGAGG
GTCGGTGGCGGCGCTCTGCTCCGGCGGGCGCCCGTGGTGGAGGCAAGGCAGCGCCTCGTCCACACGACCCCGGAGGAGAT
GAGAGAGGTGGCGACCCGCGCGGCGCAAATCGGCAAGACAAAGGAGCAGCTGTTCGACATGGTCATTGACCTCAATAGCA
ACTACAACGTTCCCCACAGCATGAAACGGGAGCACTTGCTGCTGTCACAACGCCTCTCTTCACAAATCCAGCCTAGACCA
TACGACCCAGCCTGGTAACAACTACTCTACTG---CTGCTGCTGCACTATCCTTCTAGTACTTACTATCGATTTGGATTT
ACACATATTCATACTATATATTGTTTGCTTTTAGATTTGTCTCTAGATAGATTTACATATATCTGGTATTCTGGTCTGGT
CTGGTCTGGCCTGGTCTTTGAGAACTCATCTCA--TGTATTGTGTTGTTGTACCGTAGGCGTTTCTGCCGACGCACCGAA
AGACGCAATACTTTCTACAAGTTTGTGGGGGTGACTACTTGTGGCCTTGTCGGCTCAGCCGGCCTCTTCTTGCTCCTACA
CGGACCTCATCATCGACCAAAGAAGTGGGTTGTCGACTGGTGGGACAAGCTAACCAGTTAGAATCC----ATCCATGCCC
TGCTTCAACAACATATATATATATACTAGAATGCCAACAAGACTAGCTTCCTTGTCATGAGGTTTATGTTAATTAGCTTT
GCTTGGCTACCAACTAAGTGCTATTATATGTTTGGACGGTCTATCTATCTTTTTGTCCAACGATTTCTACTTGTTCGACT
CTTGTCTGCACTCGTATTTATACCAGGGCTATGCTAGGTGTGCAACTGCTTTATTTACTACTCCTTCTGTTCACTTTTAT
AAGACCTTGAAAACATTTCAGACAATGCTCAAAACAGCCTATTTTGAGTTGTCTGAAACGACTTACAAAAGTGAACGGAG
GGAGTACTCAACAAATGTTGCCTCTTCCAATGACGAGCCGTACGACTCTTTCAAATTCAGTAAACATCAAGTATGAAGTC
AGTGTATCACAACTTCCTCATCGGAACACCAGCTGCTGGTTCGCCTAGCTGAAATTGCGTAAGGGCCATCAGTCTCTTGT
TCTACTTTACCATGTCGGCAAAAGAAAAATGTTCTACACTAAGTTCTGCACATAACCGATAGTTTTACTCTAAAGTTACA
TACTAAAGAGTGTCTAG---------------------------------------------------------------
------------------------TACATTGTAATGCTATGGTACCTCTAGCTCTATGCTCATCCCACTTGGGAAACACT
GTAAAAGATCCAATGAAATCAGACACCCTCCCTAAATTTTGTCTCAGATATGAACTGATTATGAACCAGCTGCACAAGCA
TGTTTTGAGAGCACAAAACAGAAGCAAG---------CAAATCCGTGAATATCAATCCATTATTGCACATATAAGTCTGT
ACAAAACCCTGACGAGCCCTTGGCTGGTGGTGGAGAAGTTCCGGGCGTACTTCGACACTTGAGGAAGGTCGTGCGTATGA
TGATGAGAATAAAAGGATTTCTAAC---TTCGATATAGT-----------------------------------------
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>SNPs
-------------------------------------------------------------------S------------
----------------------------------------------S---------------------------------
----------S------------------------------------S-------------------------S------
------------S-------------------------------------------------------S-----------
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----------------------S---------------------------------------------------------
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-----------S--------------------------------------------------------------------
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>forward_208
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----------------------------CACTGGAGGAGGAGGAATGC--------------------------------
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>reverse_2183
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----------------------TGAAAAATGTTCTACACTCACATAACA-------------------------------
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