>input_sequence_73703
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------------------------------------------ATGTTTGCAGGTGCCACGGAGACCACATCAACTACTTT
GGCGTGGGCTATGTCAGAGCTTGGGCGGAGTCCTGAAATCATGGCTAAGGCACAACAAGAAGTATGGGAGGTTCTTGGTG
AAGGCCGATCTGTCATTACTAATAGTGACATCGTTAAACTCCACTACATTCAGATGGTCATCAAGGAAACCCTTAGGTTA
CATCCACCAATTTCTCTAATCCCACGCTCAGCTAGAGAGGATTGCACAGTTATGGGGTATGACATCCCGAAAGGCACCAA
TATATACATTAATGCCGTTGCAATTTCTCAGGATCCGAAATATTGGGACAACCCTAGAGAGTTTAGGCCAGAGAGGTTTG
AGAACATCAACTTAAATTACAATGGAACATACTTTGAATTCATTCCCTTTGGAGCTGGGCGACGGCAGTGCCTCGGGATC
CAGTTTGGCTCGTCGGTCATGGAGATGGCATTAACAAACTTTCTATATCACTTCAACTGGAGACTTCCTGATGGTTCTAG
CCTTGTTTCGTTTGACATGTCCGAGAAGTTTGGGTTGGCTGTAAGCAGAAGGTATGACCTGCAACTCAGAGCTATTCCAC
ATGTGTGGTCCAA------G---ACGTCGAAGTGA---------------------------------------------
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---------------------------------------
>chr1D_1_TraesCS1D01G022600
TTTTTGAAAAACAATTGTGTTTTAAATACCATGGCAAGTTTTAGAGTTTTTGTTTGTTATGGTCATATGTGTAATGTAGG
CAAAATTAATTCATGCACCATGGCAATTTTCATTTCTAATATCATGGCAAATTAAATTCAAGATTCATGGCAAACTCTTT
TTTGCATCATGCCAATTATACTTCATGGGCCATGACAATTTTTACTAAAGAATCATTTGTACATTTTATTTTCTCTAACA
AGGCAAACTTACTTTATGGACCATGGCAAGAAATATCTTTTTCGTATCATGGCAAAATTTCACCTATTTATTTACCATGT
CAACTTTACCTACATTGCCATGGCAAATTACTTTAAAATAGATGGCATTTTTACTTTAAATGCTCATCGAATTTTTTTTT
GCAATGCCATGGCAAATTTTACTTTACATCCATGGCAATTTTTGTTTGTACCATGGAAAATCTTCTTTTCTAAACAATCC
ATGGTATCTTGTTTTCATTTCTATCACATCAAATTTGTTTTTTGCTTTAATTTTGGACAATGTCAATTTTCCCCATAGCC
TGGGAATAATTGGGCTTTCTTAGTTACAACAAAAACGGTGGTTTCCCTCCCTTTTTTTCCTTTTGTACAGTGTCAGAAAA
AACAGGGTTGTTCGTTTTCGTGGGGCCCATCTGTAGTACTGTTTTTTTTTGCATTTTCCCACTAGTTTATGTTCAGAGTT
GATTGTTTTGGGTCAGGAGGCCACAACAGGCTGGCTAGCTGGACAGTTCGGGCTGCAATCATATCTAATTGAATGATTTT
ACTTGGTAGATCGCTCCTCCCCTGAGTGATGAGTGTACTAATCATCGTCTGTAGTGTCTA--CATCTAATCGATCACATG
TTACTATATTAGTCTTCACAAACAAACACTTAAATTATTCATACATTTAGACGTAGCTTTTTGAAGTATTCATATATTAT
TCTATATAGGGAGATGTTTGATTGTGCTTTGTACAACAGGATATGTTTGCAGGTGCCACGGAGACCACATCAACTACTTT
GGCGTGGGCTATGTCAGAGCTTGGGCGGAGTCCTGAAATCATGGCTAAGGCACAACAAGAAGTATGGGAGGTTCTTGGTG
AAGGCCGATCTGTCATTACTAATAGTGACATCGTTAAACTCCACTACATTCAGATGGTCATCAAGGAAACCCTTAGGTTA
CATCCACCAATTTCTCTAATCCCACGCTCAGCTAGAGAGGATTGCACAGTTATGGGGTATGACATCCCGAAAGGCACCAA
TATATACATTAATGCCGTTGCAATTTCTCAGGATCCGAAATATTGGGACAACCCTAGAGAGTTTAGGCCAGAGAGGTTTG
AGAACATCAACTTAAATTACAATGGAACATACTTTGAATTCATTCCCTTTGGAGCTGGGCGACGGCAGTGCCTCGGGATC
CAGTTTGGCTCGTCGGTCATGGAGATGGCATTAACAAACTTTCTATATCACTTCAACTGGAGACTTCCTGATGGTTCTAG
CCTTGTTTCGTTTGACATGTCCGAGAAGTTTGGGTTGGCTGTAAGCAGAAGGTATGACCTGCAACTCAGAGCTATTCCAC
ATGTGTGGTCCAA------G---ACGTCGAAGTGAAACACAGAGCTTGTATATACACGTGACAATGCATGTTCATATACC
TGCAGTTTCAGCGCATGTCGTTTTTGCAATGTATGGTTGTACCTTTATGCAATGGAATACGAGAAGTTGGGTTAA-AACG
AATAAGAAAAGCTCATTGCAACCATCATGGTATTGGATCTACTGTATGTACTACTAGTGCATGACAGAAGATTTTACGTA
GTAGTGTAGTACTACATGGCTGTACGAGTTATACGTAGTTATATGAAGTTTGTAGTAACACATGAGTATTAATTAAGTAT
GATCT-----------ACATATGTGCTTTATGCGGTCTGCTAACGGTGGATATGGACATATATGTTGTCTCGTAAGTAGT
CTCATGGAGCTCAAGTTGCCTGATCCAAAGTTCTTGGCATTTACCCGTCCAGGGCAAGGATCCTATGTATTATAATCTTT
-GGCAAATGACATACTTGACTGCTAATCCAATTATTGAAGCATGAAAAAAGTAGATGGAAATTGATTTTCATTTATTTTG
TGAGTGCACGATGAACAAGGCATTGGAGGCTCGCTTTTTATCCAACCAAGGACCAGATTGCATATGTACTCCCTCCACTC
CATATTAAATGTCGCTGATTTAGTACAAAGTTTACTAAGTCAGCGACACTCAATATGTAATGGAGGGAGTATTTGCAAAG
GATCTACTAGAGCTACCGTTTCACAAGTAAGACTCTTC---TGTTTGCTATAGTTTCTTAGAGAACATATTTATTTATTT
CATACAAATAGTTTTGCTAGTTGAAAGACTCTTTAGTT-AATATGATAGCAAAATATAACTCAAACTATTCAACATTCC-
--------------------------ACAACACAGTTCAGAGTCTATCAAATAATATCAACCTGCTGGATATGCCATCTG
AAATTGAGTTGTCATGTTAAAAGTCACTAGATAGAAATTTGCCGATAGTTTTAGTTACAGTATGGTAATCTTTCTCTTGA
AACAGGCTCTCACCCCGCTGGTCTCAAGCTTGGGAGCAA
>chr1B_821
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--------------------CCTGACTGATGGGTGTAATAATCATCGTATGTAGTGTCTACACATCTAATTGATCACATT
TTACTATATTAGTCTTCACAAACGAACACTTAAATTAATCATACTTTTAGACAAAGCTTTTTGAAGCATTCATATATTAT
TTTATATAGGAAGATGTTTGATTGTGCTTTGTACAACAGGATATGTTTGCAGGTGCCACGGAGACCACATCAACTACTTT
GGCGTGGGCTATGTCGGAGCTTGGGCGGAGTCCTGAAATCATGGCTAAGGCACAACAAGAAGTATGGGAGATTCTTGGTG
AAGGCCGATCTGTTATTACTAATAACAACCTCATTAAACTCCAGTACATGCAGATGGTCATCAAGGAAACCCTTAGGTTG
CATCCACCAATTTCTCTAATCCCACGCTCAGCCAGAGAGGATTGCACAGTTATGGGGTATGACATCCCTAAAGGCACCAA
TATATGCATTAATGCCGTTGCAATTTCTCAAGATCCGAAAAACTTGGACGATCCTAGAGAGTTTAGGCCAGAGAGGTTTG
AGAACATCAACTTAAATTACAATGGAACATACTTTGAATTCATTCCCTTTGGAGCTGGGCGACGGCAGTGCCCCGGGATC
CAGTTTGGCTCATCGGTCATGGAGATGGCATTAACAAACTTTCTATATCACTTCAACTGGAGACTTCCTGATGGTTCTAG
CCTTGTTTCGTTTGACATGTCTGAGAAGTTTGGGTTGGCTGTAAGTAGAAGGTATGACCTGCAACTCAGAGCTATTCCAC
ATGTGTGGTCCAA------G---ACGTCGAAGTGAAAAACAGAGCTTGTATATACATGTGACAATGCATGTTCATATTCC
TGCACTTTCAGCGCATGTCATTTTTGCAATGTATTGTTGTACCTTTATGCAATGGAGTATGAGAAACTGGGTTAAAAAGG
AATAAGAATAACTCATTGCAGACATCATGGTATTGCATCTACTGTATGTACTACTAGTGCACGACAGAAGATTTTACGTA
GTAGTTTAGTACTACATGATTGTACAAGTCATACATAGTTATATGAACTTTGTAATAACACATGACTATTAATGAAGTAT
GATCTGTGGATCAGAAACATATGTGCTTTATGCGATTTGCTATCGGTGG-TATGAACATATATGGTGTCTCGAAAGTAGT
CTCATGGAGCTCAAGTTGCCTGATCCAAAGATCTTGTCATTTAGCCGTCGAAAGCAAGGATTCGATATATGATAATCTTT
GGGCAAACGACATACTTGACTGCTAATCCATTGTG-GAAGCACGAAAAAGGTAGATATAAATTGATTATCATT--TTTCG
TGAGTGCACGATGAACAAGGCACTGGAGGCTCGCCTTTTATCCAACCAAGGACCAGATTCCATATGTACTCCCTCTGCTC
CATATTAAATATCGCTGATTTAGTACAAAGTTTGCTAAGTCAGCGACACTCAATATGTATCGGAAGGAGTATTTGCAAAG
GATCTACTAGAGCTACCGTTTCACTAGTAAGACTCTTTCTGTGTTTGCTATAATTTGTTAGAAAACATTTT--TTTATTT
CGTACAAATA-TTTTGCTAGCTGAAAGACTCTTCAGTTAAATATGATAGCAAAATATAACTCAAACTACTCAACATTCCT
TAAACTTACAGATTCTACAGTACACCACAACACATTTTAGAGTCT---AAATAATATCAACCTTCTGGATATACCATCTG
AAATTGAGTTGTCATGTTAAAAGTCAGTAGATAGAAA---GCCGACAGATTTAGTAACAGTATGGTAATCTTTCTCTTGA
AACAGGCTCTCGCCCCGCTGGTCTCAACCTTGGGAGCAA
>chrUn_821
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--------------------CCTGACTGATGCGTGTACTAACCATCGTCTATAGTGTCTA--CATCTAATTGATCACATT
TTACTATATTAGTCTTCACAAACAAACACTTAAATTATTCATACTTTTAGACGAAGCTTTT-GAAGCATTCATATATTAT
TCTATATAGGAAGATGTTTGATTGTGCTTTGTACGACAGGATATGTTTGCAGGTGCCACGGAGACCACATCAACTACTTT
GGCGTGGGCTATGTCGGAGCTTGGGCGGAGTCCTGAAATCATGGCTAAGGCACAACAAGAAGTATGGGGGATTCTTGGTG
AAGGCCGATCTGTCATTACTAATAACGACCTCGTTAAACTCCACTACATGCAGATGGTAATCAAGGAAACCCTTAGGTTG
CATCCACCAATTTCTCTAATCCCACGCTCAGCCAGAGAGGATTGCACAGTTATGGGGTATGACATCCCTAAAGGCACCAA
TATATACATTAATGCCGTTGCAATTTCTCAAGATCCCAAAAAATGGGACAATCCTAGAGAGTTTAGGCCAGAGAGGTTTG
AGAACATCAACTTAAATTACAATGGAACATACTTTGAATTCATTCCCTTTGGAGCTGGGCGACGACAGTGCCCCGGGATC
CAGTTTGGCTCATCGGTCATGGAGATGGCGTTAACAAACTTTCTATATCACTTCAACTGGAGACTTCCTGATGGTTCTAG
CCTTGTTTCGTTTGACATGTCCGAGAAGTTTGGGTTGGCTGTAAGCAGAAGGTATGACCTGCAACTCAGAGCTATTCCAC
ATGTGTGGTCCAA------GTAGACGTTGATGTGAAACACATAGCTTGTATATACACATGACAATGCATGTTCATATACC
TGCACTTTCAGCGCATGTCATTTTTCCAATGTATGGTTGTACCTTTATGCAATGGAATATGAGAAATTGGGCTAAAAATG
AATACGAAAAGCTCATTGCAAACATCATGGTATTGCATCTACTAAATGTACTACTAGTGCATGACAGAAGATTTTACATA
GTAGTGTAGTACTACATGATTATACAAGTTATAC----------------------------------------------
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>chr3B_995
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------------------------------------CAGGACATATTTGCAGCTGCTACGGACACTACAGGAACCACGTT
GGCATGGGCCATGTTTGAGCTTATGCATAGTCGTGAGACTATGGAAAAAACACAACAAGAAGTACGTGAGGTGTTGGGTG
AGAACAAAGCTCTCATTACCAATAGTGACATCCCTAAACTCCAGTCGGTGCAGATGGTCATCAAGGAAACCCTTAGGTTG
CATCCACCCGCTCCTCTAGTTCCACGCGCAGCCAGAGAGGATTGTATTATCATGGGTTATGATATCCCTAAAGGTATCAA
TGTATACATTAATCTATTCTCAATCTCCCATGATCCTGCATATTGGAACAGTCCTGGAGAGTTTAGACCGGAGAGGTTTG
AGAACAACAACGTGAACTACAATGGGACATACTTTGAGTTCATTCCCTTTGGAACTGGGCGACGACAATGCCCAGGGATT
CAATTTGGCTCGTCACTCATGGAGATGGCACTAACAAACTTTATGTATCACTTCAACTGGAAGCTTCTTGATGGAGCTAG
CCTTGATTCAGTTGACATGTCCGAGAAATTTGGGATTACGGTAAGCAGAAGGTATGACCTGAAACTCGGAGCTATTCCAC
ACGTGTGGCCCAA-------------------------------------------------------------------
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>chr7A_995
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------------------------------------CAGGACGTATTTGCAGGGGCTACCGAGACCACAGGGAACACATT
GGCATGGGTCGTATCAGAGCTTATGCACAACCCTCACACTATGGCTAAAGCACAGCATGAAGTACGCGATGTGTTGGGTG
AAAGCCGATCTGTCATTACTAATAGTGAGCTTGGTGAACTCCACTATATGCGGATGATCATCAAGGAGGCTCTTAGGTTG
CATCCACCTGGTCCTCTGATTCCCTGTATGGCCAGAGAAGACTGTACAGTTAAGGGTTATGATATCCCTAAAGGCACTAA
TGTATATATTAATATTTTCGCAATTTCTCGGGATCCTAGATATTGGATCAATCCTGAAGAGTTCATGCCAGAGAGATTTG
AGAACAACAATGTGAACTACAAAGGGGCTTACTTTCAGTTCATTCCCTTCAGGGCTGGGAGACGGCAATGCCCGGGGATT
CAGTTTAGCTCATCAATCACTGAGATGGCATTAGCAAACCTTTTTTATCACTTCCATTAGATGCTCCCTAATGGTGTTAA
CCTTGCTTCGTTTGACACGTCCGAGAAATTTGGGTTTGCGGTAAGCAAAAAGTATGACCTGAAATTCAGAGCTATTCCAC
ATGTGTGGTCCAATGCTATG---ACGTCGAAGTGACACGAGGAGCCTGCATATTCAGGTAGCAATGCATGTTTACGTACC
TGCACTTTCAGCACGTGTC-------------------------------------------------------------
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>chr2B_995
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------------------------------------CAGGATATATTTTCAGCAGCCACAGAGACTACAGGAAATGTTTT
GGAGTGGGCTATGTCAGAGCTCGTCCGTCATCCTGAAATCATGGGTAAGGCACAACAAGAGGTCAGAGAGGTACTAGGTC
AAGATCGAGCTACCATTGGTAATAGTGACCTTGGTGAACTCCACTACATGCGGATGGTCATTAAGGAGGTTCTTAGGTTG
CATCCACCCGCTCCTCTACTCCCTCGCTCGGCCACAGAGGACTGTAAAATTATGGATTGTGACATGCTTAAGGGCACAAA
TGTATACGTTAACGTCTATGCAATTTCCCGAGATCCAAGGTACTGGAAAAATCCTGAAGAGTTTAAGCCTGAAAGATTTG
AGGACAACAACATTGATTACAATGGGACATACTCTGAATACACCCCCTTCGGAGCTGGGCGACGGCAGTGTCCTGGGATA
CTATTCGGCACGTCATCGCTCAATATCACATTGGCAAACCTTCTGTATCACTTTGACTGGATGCTTCCTGATGGGGCTAG
TCTGTCTTCCTTTGACATGTCTGAGAAATTTGGTATCACGGTTAGCAGAAGGCATGACCTGCAACTCAGAGCTATTCCAC
ATGAGTGGTTCAA-------------------------------------------------------------------
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>chrUn_1008
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-------------------------------------------------CAGGTGCCACGGAGACCACATCAACTACTTT
GGCATGGGCTATGTCAGAGCTTGGGCGGAGTCCTGAAATCATGGATAAGGCACAACAAGAAGTATGGGAGGTTCTTGGGG
AAGGCCGATCTGTCATTACTAACAACGAGCTC--------------------------------------------GTTG
CATCCACCAATTTCTCTAATCCCACGCTCAGCCAGAGAGGATTGCACAGTTATGGGGTATGACATCCCTAAAGGCACCAA
TATATACATTAATGCCGTTGCAATTTCTCAAGATCCAAAAAACTGGGACAATCCTAGAGAGTTTAGGCCAGAGAGGTTTG
AGAACATCAACTTAAATTACAATGGAACATACTTTGAATTCAATCCCTTTGGAGCTGGGCGACGGCAGTGCCCCGGGATC
CAGTTTGGCTCATCAGTCATGGAGATGGCATTAACAAACTTTCTATATCACTTCAAATGGAGACTTCCTGATGGTTCTAG
CCTTGTTTCGTTTGACATGTCTGAGAAGTTTGGGTTGGCTGTGAGCAGAAGGTATGACCTGCAACTCAAAGCTATTCCAC
ATGTGTGGTCCAA------G---AAGTCAAAGTGAAACACAGAGCTCGTATATACACGTGTCAATGCATGATCATATACC
TGCACTTTCAGCACATATCATTTTTGCAGTGCATGGTTGTACCTTTATGCAATGGAATAAGAGAAGTTGGGTTAAAAAAG
AATAAGAAAATCTCATTGCAAACATCATCGTATTGCAT-------------TACTACTGCACGACATAAGATTTTATGTA
GTAGTGTAGTACTACATGAATGTACAAGTTATAC----------------------------------------------
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>chrUn_1008
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-------------------------------------------------CAGGTGCCACGGAGACCACATCAACTACTTT
GGCATGGGCTATGTCAGAGCTTGGGCGGAGTCCTGAAATCATGGATAAGGCACAACAAGAAGTATGGGAGGTTCTTGGGG
AAGGCCGATCTGTCATTACTAACAACGAGCTC--------------------------------------------GTTG
CATCCACCAATTTCTCTAATCCCACGCTCAGCCAGAGAGGATTGCACAGTTATGGGGTATGACATCCCTAAAGGCACCAA
TATATACATTAATGCCGTTGCAATTTCTCAAGATCCCAAAAACTGGGACAATCCTAGAGAGTTTAGGCCAGAGAGGTTTG
AGAACATCAACTTAAATTACAATGGAACATACTTTGAATTCAATCCCTTTGGAGCTGGGCGACGGCAGTGCCCCGGGATC
CAGTTTGGCTCATCAGTCATGGAGATGGCATTAACAAACTTTCTATATCACTTCAACTGGAGACTTCCTGATGGTTCTAG
CCTTGTTTCGTTTGACATGTCTGAGAAGTTTGGGTT--------------------------------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSS-----S-----S--------------------------------------S--------S
--------------------------------------------S--------S------------S-------------
----------S---------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------S-----------------------------S
--------------------------------S-----------------------------------S-----------
---------------------------------------------------S----------------------------
------------------------------------------------------------------------S-------
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----S--------------S---------------------------------------S------------------S-
---------------------S-------------S--------------------------------------------
------------------SS-----S--------S------------S------S----------S-------S------
----------------------------------S-S-----S------S----S---------S-------S-------
------------------------------S-----S------S-----S-SS--------S-S--S---S---------
-------S----------------------S-SSSS------S------S------SS---------S-----SS---S-
----------------------S-----------S------------------------S---------------SS---
----------S----------------------S-------------------------SS---S---------------
------------------------S------------S--------------S---S-----S-----S--SS-------
-S--------S---------S------------S----------------------------------S-----------
----------------------------------S--S-------SSS---------------S--------S-------
--------------------------S----------SSS-----S--S------S------------------------
-----------S---------------S-----------
>forward_664
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----GGGTTGTTCGTTTTCGTGGG--------------------------------------------------------
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>reverse_2031
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------------------------------TTCTTGGCATTTACCCGTCCA-----------------------------
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---------------------------------------
