>input_sequence_73694
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----------------------------------------ATGGGTGCCCTCTCGTGGGCGGCTGACGCGGTGGTGGTGA
TCTACTCTCTCACCGTGGCCATCACTGCACCGCTAGTCGTCGCACAGGGCATCCTCCCGCGCCGCCTCTTCCCGGCGCCG
CTTGTGGCCTTCAAGCTGTGGTACGCGGTGAAGTTCGACGACTACCTCACCGCCGAGCCACCGGCTTTCTTCCGCGGGCT
TAACTGGCTGGAGCTCGTCTTCCAATGGCCGCTCAACGTTGCCAACGTCTACGGCATCCTTGCCGGCCGCCCATGGGCCG
CCACCACATCCCTGATGGCCGGCGTCTCTACCCTCACCTCCATGGTACCTCATCTTCCTTCTCCTGCTCACCTTGGCTTT
TTTTTTTTTTTTGCATTCCTTCTCCGGAATACACTAGTATAACAATTAAATGCTCTAGGGTCCTTCTAATTTCTACACTT
TGTGGTCATTTT-------AGGCTGCGATACTTGGAGACATTCTGGGATCAGGGAGAGCGACCAAGAAATTGCTTCTGGT
CTATGTCCCTTACGTTGCTTTCGCCGTCATCGCGATTCTTCGTGGGCTCGCCTCAGGCTCAAGATCTCCAGCGGGTTCTC
TTGCATCTTATGCTTGGAAGAAAATCATCTAG------------------------------------------------
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>chr6D_1_TraesCS6D01G047900
CCGGGCACGCACCCACGCCTCCACTCGCCCCTGATCATAC----------------------------------------
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----CCGCGCTCTCCGCGCACTGATAGCGCCCACGCTACGCCCGACGCCCGCGTCACACGGCCAGCTCCAACGGCTCGCG
CCTGACCAGCCCACCTACGGTTCGCCAACAGATGCACACACACA--CACTCTGGTGCACGGACACGCCCGTGCACCCAAC
GCACGCACACACGCACGCCCTAGTCCTTGGACCCGACGCGCCCGACAAGTCCAGCGCGCGCCCATACCCGCACTCGACGT
GCCCGGCTTTGTTGCCGTGGCTTATTCGTCCATCACGCGTTGGAAGGCCTGCTTTGTTCGTTTACCCCCAAACGGATGCG
GACGGATAGGATGGGGTCGCGCGTTGGAGTTGGCCTTA---CATGTGGTTTTCTTGTGTCGTGTCCTTCGCTTGGCTTCA
TCTCCTCCCTGTCTCCTTTTGTTCTTGACGTGGTGCTTTCC------------------------------TGCTTGCTT
TTCTTGACCGCAAGGTTTCTTCGAGCTTCGCTCCTTCTGCCACTCGACTGCACATCAATTTCTTCGATAAGCAGTGCCAA
AGGTGGTGCTAACTGTTTGTTGATATGGAAGAGGACAAGATAAGATCGTGCAAAAGAGAAAGCCCATGCTCCAGAATCAA
AACATGGCATACTATACTACCTCAATACGCAAAGACAGCAGGCATATTGTTGACTTTTTGTGGTACCTCTCGTGATGACA
ACTAATCATAGATGATGAGTACAGAAGATGGCAACATAGCTGTCTTTGAAAATGATCTTTAACTGACGCCCTTCACAACA
TAATGCAATACCTTCAGCATCTAAAG-TAGTTTATAATCCAATACCTTGCGATGACATAGATGAGTACAGTGATTACGAA
AGAAAAAAAAATAGCTGGTTTCCTTTCATTTTCCTTGGGCCATTCCCGTTCTGAACTGGACTTGCATAAATAGAGAACAA
ATAGTCAATCCAAGGAGAAGCAACTCAAGAGTTGAACGCAATGGGTGCCCTCTCGTGGGCGGCTGACGCGGTGGTGGTGA
TCTACTCTCTCACCGTGGCCATCACTGCACCGCTAGTCGTCGCACAGGGCATCCTCCCGCGCCGCCTCTTCCCGGCGCCG
CTTGTGGCCTTCAAGCTGTGGTACGCGGTGAAGTTCGACGACTACCTCACCGCCGAGCCACCGGCTTTCTTCCGCGGGCT
TAACTGGCTGGAGCTCGTCTTCCAATGGCCGCTCAACGTTGCCAACGTCTACGGCATCCTTGCCGGCCGCCCATGGGCCG
CCACCACATCCCTGATGGCCGGCGTCTCTACCCTCACCTCCATGGTACCTCATCTTCCTTCTCCTGCTCACCTTGGCTTT
TTTTTTTTTTTTGCATTCCTTCTCCGGAATACACTAGTATAACAATTAAATGCTCTAGGGTCCTTCTAATTTCTACACTT
TGTGGTCATTTT-------AGGCTGCGATACTTGGAGACATTCTGGGATCAGGGAGAGCGACCAAGAAATTGCTTCTGGT
CTATGTCCCTTACGTTGCTTTCGCCGTCATCGCGATTCTTCGTGGGCTCGCCTCAGGCTCAAGATCTCCAGCGGGTTCTC
TTGCATCTTATGCTTGGAAGAAAATCATCTAGTACTTATTTCTTTTGTTATGCTGTACCCACAACCATGTAACCAGGGAG
GAGTTCGTGATCATCACAATCTTCCTTGTACAATGGATTAGAGCATTATCATATTTCTCTTTACATATCCGCTTGGAAAA
TTGTTTAGGTTTTGGCTGAAATCAGTCGCGAGGACGGGCTCCTCGAAGACTACAGGCTACGCCAGTTGGTGTCGTTCGTT
GCT--GCCAAGGGATTAACATTATGTGAAATCCTTGTTTCACACCCTTCATATCTCCACTTCGTTTTTCTTTCAACTTAG
TTCTTGTAAGAGTTTCGTCAATGAAGCTTGGGAGAAAAACCATTTATCAAAGGAAGATAACGATAGCATGCACATGGATA
GATCCGTATTAGTCGCTGCGTGAGCCACATGCACGCATGTGGATGGCTTATAATTTTGCTTGGGTTAAGCGAGGGCAAAT
ATTTAACCAATTAGACAGTTCTGACCTCTACTAATCCATCCCACCATCTTCCACCGA----CATCAAGTAGACGTTTATA
AGACATGTAAGCTAGCTGGTCTAATGCTGGTTTGTCGCAGTTACCAATTGTCTACATATCACGTATTAATTGTCTTGGTT
AGAAGCAAGAAAATAGGAAGACTTCACATATACTCCATCCGTTCTGATATATGTCTTTTGAGAGATTTCAATATGAACCA
TATACAGATGTATATAGACGTAGTTTACAGTGTAGATTCACTCGTTTTGCTCCGTACATAGTTCATATTAAAATCTCTAA
AAGGACTTACATTTAGGAACAGAGGGATTATATGTGAAGTCTTTCTATTTTCTTGCCAAAATGGTCCTCTATATGCTCTC
TTTCTTCCAACTTCCAAAAGGGGTCCTACAAAGACTGGACTATTTTAGATTCAGATTCTTTTAGCAAGGAAACGGCGAAA
AGAAAAAGTACAGACTGGCCAAATGGAGCGTGGTTTGTAGGCCGAAAGACCAAGGTGGCCTTGGAATTCATGACCTGC
>chr4D_1
CCGGGCACACACCCACGCCTCCACTCGCCCCTGATCCTACCCGCGCTCTCCGCGCACTGACCGCGCCCACGCTGCGC-CG
ACGCCCGCGTCACACAACCAGCTCCAACGGCTCGCTCCTGACCAGCCCACCTACGGTTCACCAACAGATGCGCGCACACA
CACACACTCTGGTGCACGGACACGCCCGTGCACCCAACGCACGCACACACGCACGCCCTAGTCCTCGAACCCGACGCGCC
CGGCAAGTCCAGCGCGCGCCCATACCCGCACTCGACGTGCCCGGCTTTGTCGCCGTGCCTTATTCGTCCATCATTCACGC
CCTAAGCCGCGGCTCAGAGCAGCCCGGGGTCCTCGACGTCGCCGTCTGCCAGCAGCGCACGCGCTGCCGCCGGCTCCTTC
CACAGCAGGGGGCACTCCCGCTTGAAATGCCCTCTGACGTCGCACTTGTAGCACTTCCCGCGACGGTTGTCCCCGCCGCC
TGATGCTGTGCTCGCCGCGCCGTCGTCGTCGTCCTCTCCGCGTGCACCGCCCCGACGCCGCTCGCGCGCACGCCACTGTG
CCGCGGTGTACAGCAGCTGCCCGTCCGCGCCCTCGCCGCCTGCCTGATCGCGTCGCCGCAGCCGCTCGTCGAAGGCTTTC
AGCCGCCCCAGCGCGTCCTCGAACGCCATGGTGTCGACATCACAGAACTGCTCGATCCCGGCCACCGCCGGGTACAGGCG
GTTCGGCACCGAGTCGAGCAGCTTCTTGACGAGGGCTGCGTCCTCCAGGGTTGAGCCCAACGCCGCGTAGCGCGCCGCCA
TCCCACCGAGTCTGCCAGCGAAGTCGTCCAGGGTCTCGGCGTTCGCCATGCGCAGGAGCTCGAACACCCCGCGCAAAGTG
CCCAGCCGCGCCGCCCGCACGCGGTCCGCACCGACGAACCGCGCCTTCAGAGCAGCCCACACCTCCGCGGCGGTCTTCTT
CGCCGCCACCTGCAGCAGCAGGTTCTCCGCGAGCGCGCCGAGCAGGTATGCCCTCGTCGGCTTGTCCTTCTTGGCGATCA
CGGCCGCCGCCGCGTCCTCCGGCACGACCACCGCCTCCCACAGCCCGGCCGCGTCGAGGTTCGCCTCCATCTTGATCGCC
CACGCCGTGTAGTTCTCGCCGGTGAGCTGCGGCACCGCCTGCAGCAGCGATCCGCCCGTTCCGCGGGCGTACGGGACGAT
GGACATCGCCGGCGCGCCCTGACTAGACCGTGGCTCTGATGCCAAATGTTGGAACCTCCACGCCCACGCCCTAGCTCGCC
TCTCCCTCTCACTCTGGTCGCTCACTGATGCCATGGCTCGCTCACCGGAGAGAAGAAGAAGAAATTCAGAGAAATG----
-------GTGGACACAATGGGTTTGCCGGCGCACGAATACCCCCTTTACTCCCTCGAGCACGAACTCGACCGTGTCAATC
TGTTACAACACCATCAGATGGCTTTATACCCCGAGCCA-GCGCACCGGGCACGCACCCACGCCTCCACTCGCCCCTGATC
CTACCCGCGCTCTCCGCGCACTGACCGCGCCCACGCTGCGCCCGATGCCCGCGTCACACGGCCAGCTCCAACGGCTCGCG
CCTCACCAGCCCACCTACGGTTCGCCAACAGATGCACACACACACACACTCTGGTGCACGGACACGCCCGTGCACCCAAC
GCACGCACACACGCACGCCCTAGTCCTCGGACCCGACGCGCCCGGCAAGTCCAGCGCGCGCCCATACCCGCACTCCGCGT
GCCCGTCTTTGTCGCCGTGGCTTATTCGTCCATCA---------------------------------------------
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>chr2B_1
CGGGC-ACGCACCCACGCCTCCACTCGCCCCTGATCCTCCCCGCGCTCTCCACGCACTGACCGCGCCCACGCTGCGCCCG
ACGCCCTCGTCACACGGCCAGCTCCAACGGCTCGCGCCTGACCAGGCCACCTAGGCTCGCCAACAAACG-------CACA
CACACACCCTGGTGCAGGGACACGCCCGTGCACCCAACGCACGCACACACGCACGCCCTAGTCCCCGGACCTGACGCGCC
CAGCAAGTCCAACGCGCGCCCATACCCACGCTCGACGTGCCCGGCTTCGTCGCCGTGGCTTATTCGCCCATCATTCATGC
CCTAAGCCGCGGCTCAGAGCAGCCCGGCATCCTCGACGTCGGCGTCCACCATCAGCGCACGCCCCGCGGCCAGCTCCTTC
CGCAGGAGGGGGCACTCCCGCTTGAAATGCCCCCTGACGCTGCACTTGTAGCATTTCCCACGATGATTGTCCCCGTCGGC
CGATGTTGTGCTCGCCGTGCCGTCGTCCTCCTCTTCTTCACGCGCATCGCCTCGACGCCGCTCGTGCGCACGCCACTGTG
CTGCAGTGTACAACAGCTGACCGTCCGCGCCCTCGCCACCTGCCTGTCCACGCCGACGCAGCCGCTCGTCGAATGCCTTC
AGGCGCCCGAGCGCGTCATCGAGGAGCAACGTTGAGAGATCGCAGAACTGCTCCATCCCCGCCACTGCCGCGTACAGGCG
ATCGGGAACACAGTCGAGCGGCTTTTTCACCATTGCCGCGTCCTCCAGCATCGCTTCGAGTCCTGCAAAACGCGCCGCCA
TCCCGCTGACCTTTCCCGCGGACGCATCCAGCGACTCGTCACTCGCCATGCGCAGGAGCTCGAACTCCCCCCAGAGCATG
CCGAGCCGTGCCGCGCGCACACTGTCCACGCCAACGAAGCGTGCCTTGAGTCTGGCCCATATCTCCGCCGCCGTCTTCTT
CGTGGCCACCTGCAGCAGGAGGTCGTCGGCGAGCGCCCAGAGCAAATAAGCCCTCGTCGGCTTATCCTTCTTGGCGATCA
CCGTTGATGCCGCGTCCTCCGGCGGCACCACCGCCTCCCACAGCCCCGCGGCATCAACGTCCGCCTCCACCTTGATGGCC
CAGGTGGTGTAGTTGTCCTCGGTGAGCAGAGGCGCTGGATGCGCCACCGCGCCGCCCAATCCGCCGCTATACGGGACAAT
CGACATCGCCGGCGCGCCCTGATCACCACGTGGCTCTGATGCCAATTGTTGGAACCGCCAACTCCTTGCCGCAGCTCTCC
TCTCCCTCTCACTCAGCTCGCTCTGGCTTGCCGTGGCTCCTTCAACGAAAGGAGGAAGAAGAGATTCAGAGAAGTTCAGA
AAAGATAGTGGACACAATAGTTTTTCCGGCGCTCAAACGCCCCCTTGTTA-CCTCGAGCACGAACTCGACCTTGTCAGTT
TGTTACAATGCCATCAGGTGGCTTTATACCCCCGAGCCGGCGCACCGGGCACGCACCCACGCCTCCACTCGCCCCTGATC
CTCCCCGCGCTCTCCGCGCACTGACCGCGCCCACGCTGTGCCCGACGCCCGCGTCACACGGCCAGCTCCAACGGCTCGCG
CCTGACCAGGCCACCTA-GGCTCGCCAACAAATGCACACACACACACACCCTGGTGCACGGACATGCCCGTGCACCCAAC
GCACGCACACGCGCACGCCCTAGTCCCCGGACCCGACGCGCCCAGCAAGTCTAGCGCACGCCCATACCCGCGCTCGACGT
CCCCGGCTTCGTCGTCGTGGCTTATTCGCCCATCATCGCCTATGGA----------------------------------
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>chr6A_310
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-----------------------------------CGCCTTGGAAGGCCTGCTTTGTCCGTTTACCCCCAAACGGGCGCG
GACAGACAGGATGGGGTCGCGCGTTGAAGTTGGCCTTATATCATATGGTTTTCTTGTGTCGTGTCCTTCGCTTGGTTTCA
TCTCCTCCCTGCCTCCTTTTGTTCTTGACGTGGTGCTTTCCTTCACGGTTGTCGCTTCGGACATCACAGCCTGCTTGCTT
TTCTTGACCGCAAGGTTTCTTCGAGCTTCGCTCCTTCTGCCACTGGACTGCACATCAATTTCTTCGATAAGCAGTGCTAA
AGATGGTGCTAACTGTTTGTTGATATGGAAGAGGACAAGATAAGATCGTGCAAAAGAGAAAGCCCATGCTCCAGAATCAA
AACATGGCATACTATACTACCTCAATACGCAAGGACAGCAGGCGTATTGTTGACTTTTTGTGGTGCCTC--GTGATGACA
ATCATA-------GATGAGTACAGAAGATGGCAACATAGCTGTCTTTGAAAATGATCTTTAACTAACTCCCTTCACA--A
TAATGCAATAGCTTAAGCATCTAAAAATAGTTTATAATC-AATACCTTGCGATGACATAGATAAGTACAGGGATTAAGAA
AG---AAGAAATAGCTGGTTTCCTTCCATTTTCCTTGGGCCATCCCCGTTGTGAACTGAGCTTGTATAAACAGAGAACAA
CGACCCAATCGAAGGCCAAGCAACTCAAGAGATGAACGCAATGGGTGCCCTCTCGTGGGCGGCTGACGCGGTGGTGGTGA
TCTACTCTCTCACCGTCGCCATCACTGCGCCGCTGGTCGTCGCGCAGGGCATCCTCCCGCGCCGCCTCTTCCCGGCGCCG
CTCGTGGCGTTCAAGCTGTGGTACGCGGCCAAGTTCGACGACTACCTCACCGCCGAGCCACCGTCTTTCTTCCGCGGGCT
TAACTGGCTGGAGCTCATCTTCCAATGGCCGCTCAACGTGGCCAACGTCTACGGCATCCTTGCCGGCTGCCCTTGGGCCG
CCACCACATCCCTGATGGCCGGCGTCTCCACCCTCACCTCCATGGTAACTCATCTTCCATCCCGCGTTCTCCTTGGCTTT
--------------------TCTCCGGAAAACACTAGAACAATC---AAATGCACTCGTGTTCCTCTAATTTCTACGCTT
TGTGGTCACTTTCACTTTCAGGCTGCCATACTTGGAGACATTCTGGGATCAGGGAGAGCAACCAAGAAATTGCTTCTGGT
CTATGTCCCTTATGTTGCTTTCGCCGTCGTCGCGATTCTTCGTGGGCTCACCTCAGGCTCAGGGACTCAAGCGGGTTCTC
TTGCATCTTACGCTTGGAAGAAAATCATCTAGTACTTATTTCTTTTGTTATGTTGTACCCACAACCATGTAACCAGAGAT
GAGTTCGTGACCATTGCAATCTTTCTTGTACAATGGATTAGAGCATTATCATCTTTCTCTTTACATATCCGCTTGCAAAA
TTGTTTGGGGTGTGGCTGAAATCAGTCGCGAGGACGGGTTCCTTGAGGCCTACAGGCTACACCAGTTGGCGTCGTTCCTT
GCTACGCCAAGGGATTGACATTATGTGAAATCCTTGTCTCACACCGTTCATATCTCCACTTCGTTTTTCTTTTGCCTTAG
TTCTTGTAAGAGTTTCGTCAATGAAGCTTGGGAGAGAAACCATTTATCAAAAGAAGGTAAATATAGCA-GCACATGAATA
GATCCGTATAGTCACC-GCGTGAGCCACATGCATGCATGTTGATGGCTTGTAATTTTGCTTGGGTTAAGCGAGAGCAAAT
ATTTAACCAATTAGACAGTGCTAGCCTCTACTTGTCCATTCCGCCATCTTCCACCGATCGACATCAAGTAGACGTTTATA
AGACATGTAAGCTAGCTGGTCTAATGCTGGTTTGTCGCAGTTATCAATTGTCTACAGATCACATATT-------------
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>SNPs
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------------------------SS-----------S------------------------------------------
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---------------------------S----------------S-----------------------------------
------------S-------------------------S------------------S-----------------SS---
---S--S-------------------S-----------------S------------------------------S----
-----------S--------------------------------------------------------------------
--------------------------------------------S--------------------------------S--
--S-----------------------------------------------------------------------------
--------------------------------S----------S--------------------S----SS---------
-SS-SSSSSSSSS---------------------------------------------------S--S---------SS-
----------S---S----------S-------------S----------------------S-------S-----S---
--SSS--S-----------------S-----------------S------S-------SS----S-----S---------
SS-SS-----S----SS--------------S------------------------------------------------
----------------S-----------S-----S--------S------------------------------------
--S-----S-------------------SS---------------------------------S----------------
----------------S----------------------S---------------------------S----S-------
----------------------------S------------------S----------S--S-SS-S--S----------
SSSSSSSSSSSSSSSSSSSS---------S-------S-S--SSSSS------S--S-S--S-S------------S---
--------S-----------------S--------------------------------S--------------------
------------S---------------S--------------------S-----------S-SS---S-----------
----------S-----------------------------------------S-----------------------S--S
----------S---SS-------S----------------------------S----------------------S----
------S--S-S--------------------------S----S--S-S-----------S--------S-------S--
----------------S--------------------S-------S--------------------------SSS-----
-----------------------------------S---------------S----S---SS------S-------S---
---------SSSSSS-S----------------S------S--------S-----------------------S------
-------------------S--SS--------SS-----S--S-------------------------------------
-------------------------------------------S------------S-----S----SSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_1932
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------------------------------------------------------------------------TGGCTTCA
TCTCCTCCCTGT--------------------------------------------------------------------
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>reverse_3102
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-------------------------------------------------------------AGATCTCCAGCGGGTTCTC
T-------------------------------------------------------------------------------
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>forward_2881
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-------------------------------------------------------------TCCTGCTCACCTTGGCTTT
T-------------------------------------------------------------------------------
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>reverse_4064
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---------------------------------------------------------------GCAAGGAAACGGCGAAA
AGA---------------------------------------------------------------------------
