>input_sequence_73690
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----------------------------------------------------------------------------CGCA
GCAAGGCAGCATATAAGATCTGCATCTCCTGTGTCACCTTCCAT---------------TCACCTAGCTAGCAACAGAGA
CCAAATCTCTGCGTCTTGCGGCCATCTTTCTTTCACCAGAAGC-GGGGGGCGATGGAGCCGATGGCGATCATGACGGTGA
CCGGCGGCGTGCTGGGGCCGGTCTTCGTGCTGCTGTCGCGGATCCAGCCGGTCGTCGACTTCTTCCGGCGGCTCTGCGAC
TGTCTCCGCCACCCTAGCCGCCGCCCCGCCAGGCCGGTCGTAGCGCCGTGGAAACGTCAGGCTACACAGGAGTGATATTT
TTCTGTGGAA-TTTCTGTTCTAACAGAAAGAAAGAGATAGGCGTTAACTG----TGGATGGATGGATGATTGAACCATAT
GCAGTATGTACGTGACTGCATGTTCTTCTTTTACCGGGTGTACGTAT--ATAGTACATACATACGCTTA-TATGGAAACA
AAATTGCTATTCCTACTCTCAACTTGTGCAAACAAATTACGGAAA----AAAAATCTGACTG-GGATTTTTAGGAGTGAT
AAATCTGACGCTTTTCATGATGGTTTATATTGGCGCGATGATGGCAAATGTAGTTTGCAAGCACGGCAATTTTCTGACAG
AAAAAATAAA----------------------------------------------------------------------
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>chr5B_1_TraesCS5B01G166700
CTGATGAGCCCCATCCAGCCATGACACATTGGCGAG-------TTTCTGATTGAAACCTACTGTATTTGCTGGCCATC--
GCAGGTTATGGACTACGCGTCACTCCCGCACTTCTGCAAGAGGGAAGGGTCCGGTTCGGGTTCGTCGTCGGACGAAGTCG
ACTGCTACTCGTACGACCATCCTTTCCACCAGGAGCTGTACAACTATGTGAAGCAGCAAGCTCTGAGGAACCAGGACAGC
GTCGGCCCCGCGAAGCAAGGGTCGATGCATGTGAGGGTGCCGACGCCGGACCTGGAGGAGGCCAAGATCATGGAGACGAT
CCAGTCGGAGCTCCACAGCCTCAAGGCAGGCGACGGCATTTCCCGCTCCTTCAGCAGGATCACGATCGAAGGTCCATGAT
GACCTTGTTTCCTGCTCATATCGAAGATCGTCATGGATATGATCCATGATGATCGGAGTGGCTCGAGATGCGCGGAGCAG
GTAATCGA-----TTATCTTATTTGACGCCAGGAAATTATTCTGGGGTTTATAGCAGTTCTTGCTTGCATTGTAACCGCT
GGCTGCATAGCTCGAGTAGGATCATATCATATCGGTAGAGGAAGTAGTAGTAGTAGG------AGCAGCAAAACATCGGA
TTCTAATAACC----GAGTCTGTATCGTGTTGTCGAAGATGGTAGTAACTAGCTCTGATTAACCTGGCTAATGGATGGAT
GTACCATTTGCGCGTTACTGTT----TCCATGCTTCTCATGGCAGGGAAATTACCGTGCTCCCAGACATGAGCAGCACGA
GCTCTATGTATCTTATCAATCAGTA-TATATAGTATATGTATGTATATGTAATCGCCCCCTGATGTTGCAACTGGTATAT
-CATTATGTATTTGAT-----GTTACCTGAACCACGACTTG-AAAGAAATCTCCCGTATGTTTCAACTTGCATGCACTGA
ATCAGATCTTGGCCAAGCACTGATAACTGCTCCCTCCCTCCATAAATAGACGTGCGTTTTGGTTGCCCGCGGTTACCGCA
GCAAGGCAGCATATAAGATCTGCATCTCCTGTGTCACCTTCCAT---------------TCACCTAGCTAGCAACAGAGA
CCAAATCTCTGCGTCTTGCGGCCATCTTTCTTTCACCAGAAGC-GGGGGGCGATGGAGCCGATGGCGATCATGACGGTGA
CCGGCGGCGTGCTGGGGCCGGTCTTCGTGCTGCTGTCGCGGATCCAGCCGGTCGTCGACTTCTTCCGGCGGCTCTGCGAC
TGTCTCCGCCACCCTAGCCGCCGCCCCGCCAGGCCGGTCGTAGCGCCGTGGAAACGTCAGGCTACACAGGAGTGATATTT
TTCTGTGGAA-TTTCTGTTCTAACAGAAAGAAAGAGATAGGCGTTAACTG----TGGATGGATGGATGATTGAACCATAT
GCAGTATGTACGTGACTGCATGTTCTTCTTTTACCGGGTGTACGTAT--ATAGTACATACATACGCTTA-TATGGAAACA
AAATTGCTATTCCTACTCTCAACTTGTGCAAACAAATTACGGAAA----AAAAATCTGACTG-GGATTTTTAGGAGTGAT
AAATCTGACGCTTTTCATGATGGTTTATATTGGCGCGATGATGGCAAATGTAGTTTGCAAGCACGGCAATTTTCTGACAG
AAAAAATAAAATAATAAACTCAGACGTATTTGTCATGTTCGTCAACTAAACTTGCCATCCTCGAAGAACAAAATTTGCTA
TGGTAAAAAAATCTGACATTAGATTTATAGTGGAGTCCACAAATAACT-----------------------ATCTGAAAG
AAAACATGGGAATAACTGGGTGTTGTAAAGCGTGTACGTACTTATGGAAATGGGTGTCAGGTTCCCCGTGTTATCATACG
AAAACCAACATTCGATGAAAACCGGCAAAAACCAAGACATATGGAACCATAAAA--AAATACCGCTTTCGTTAAGAGACA
GACACATACAGAGAGAGAGAGAGTAAGAGAGAGAGAGAGAGAGGAGGAGGAGGAGGACCAGGCCGGCGCACCG----ACT
AAACTAGGCGGTTCTAGCAATGTCGAATAGCGACATTGCATATTTTGAGAATGTCACTTAACAACATTTTAGGTCGCAAA
ATATATGTAATATGATGCATTTTAC---------------------------------TAATATATAGTATTTCCTTTCT
AAACTAATATGAGAAGTTTTAGATCATTA-------------------------------AGAGTAGTTGATAATTATCG
TGCTGATGCATGTTTTTGGTTAGATTAAATTCAGCTTAAATTGCCCAATAAATTTGAAGGAAATGACAAAAACAAAATGA
AGGCCGCCATTGGCGACACTGTATTTACACACATGCCTAACAAGCGTCACTTCATATGATGGATGGCGATCGACGATATG
GCGACTCTACTTGAGTTAGTCTTAGACAATACTACTTAGAGCATCTAAAATCACAACTCGCCAATTCCATCCTCCAAACG
CCCGCGGACACGCACAGACGCTTTCGCGGACAGTCACCGGACAACACACTAAAATTCCGGTCCACAATCGGGTACCTTAT
TTCTGAATCATCAAATCCATACGATTACATGCAACATAAACCTAGTCTAAAATTGAGCCGACGACCGTCCTTGCTGTTCC
GCTTTGTCCATGTCTGACGGCCGGCTGAGCCCCTCAAAGTGGAGGTGCGGTCGTCGGCGAGGT
>chr5D_1
CTGATGAGCCCCATCCAGCCATGACACATTGGCGAG------GTTTCTGATTTGAACCTACTGTATTTGCTGGCCATC--
GCAGGTTATGGACTACGCGTCACTCCCGCACTTCTGCAAGAGGGAAGGGTCCGGTTCGGGTTCGTCGTCGGATGAAGTCG
ACTGCTACTCGTATGATCATCCATTCCACCAGGAGCTGTACAACTATGTGAAGCAGCAAGCTCTGAGGAACCAGGACAGC
GTCGGCCCCGCGAAGCAAGGGTCGATGCATGTGAGGGTGCCGACGCCGGACCTGGAGGAGGCCAAGATCATGGAGACGAT
CCAGTCGGAGCTCCACAACCTCAAGGGGGGCGACGGCATTTCCCGCTCCTTCAGCAGGATCACCATCGAAGGTCCATGAT
ATC-TTATTTCCTGCTCGTATCCAAGATCGTCGTGGATGTGATCCATGATGATCGGAGTGCCTCGAGATGCGCGGAGCAG
GTAATCGCTTATTTTATCTTATTTGACGCCAGAAGATTATTCTGGGGTTTATAACGGTTCTTGCTTGCGTTGTAACCGCT
GGCTGCAAAGCTCGAGTAGG-----ATCATATCAGTAGAGGAAGTAGCAGCAGTAG-----------------CATCGGA
TTCTAATAACCGAGTGAGTCTGTATCGTGGTGTCGAAGATGGTAGTAATTAGTT-TGATTAACCTGTCTA----ATGGAT
GTACCATTTGCGAGTTACTGTT----TCCATGCTTCTCATGGCAGGGAAATTGCCATGCTCCCAGACATGAGTAACACCA
GCACTATGTATCGGACCA---ATCAGTATATAGTATATGTATGTATATGTAATCGCCTTCTGATGTTGCAACTGGTATAT
-CATTATGTATTTGATTTGATGTTACCTGAACCACGACTTAAAAAGAAATCTGCTGTCTGTTTCAACCTGCATGCACTGA
ATCAGATCTTGGCCAAGCACTGATAACTGCTCCCTCCCTCCATAAATAGACGTGCGTTTTGGTTGCCCGCGGTTACCGCA
GCAAGGCAGCATATAAGATCTGCGTCTCCTGTGTCACCTTCTATTCACCTTATCTCACCTCACCTAGCTAGCAACAGAGA
CCAAATCTCTGCGTCTTGCGGCGATCTTTCTTTCACCAGAAGC-GGGGGGCGATGGAGCCGATGGCGATCATGACGGTGA
CCGGCGGCGTGCTCGGGCCGGTCTTCGTGCTGCTGTCGCGGATCCAGCCGGTCGTCGACTTCTTCCGGCGGCTCTGCGAC
TGTCTCCGCCACCCTAGCCGCCGCCCCGCCAGGCCGGTCGTAGCACCGTGGAAACGTCAGGCTGCACAAGAGTGATATTT
TCTATGGAATTTTTCTGTTCTAACAGAAAGAGAGAGATAGGTGTTAACTGTGGATGGATGGATGGATGATTGAACCACAT
ATATGC-GTACGTGACTGCATGTTCTTGCTTTACCGGGTGTACGTATATATC-----TACATATGCT---TATGGGAACA
AAATTGCTATTCCTACTCTTAACTTGTGCAAACAAATTACGGAAACACTAAAAATCTGACGTCGGATTTTTAGGTATGAC
AGATCTAACACTTTTCATGACAGTTTATATTGGTGAGATGATGAAAAATTTAGTTTGCAAGCACGACAATTTTCTAACAA
AAAA--TAAAATAATAAACTCAGGCGTATTTGCCATGTTCGTCAACTAAA--TGTCATCCTCAAAAAACATAATTTGCCA
TAGT-AAAAAATCTGACGTCAGATTTACAATGGAGTCCACAAATTAAGTACCGTGAGAGAAAGCAATAATCATCTGAAAG
AAAACGTGGCAATAACCGGGTGTTGTAAAGCAAGTACGTACTT------ATGGGTGTTAGGCTCCCCATGATATCATACG
AAAACCAACATTCGGTGAAAGCCGATGAAAACCAGGGTATATTAACACCATGAAAGAAATACCGCTTTCGTTAAGAGACA
GACACAAACATAGAGAGA-------------------------GAGGAGGACGACGACCAGGCTGCGCCGGCGATGAACT
AAACTAGGCG----------------------------CATATTCTGAGAATGCCACTTAATAGCATTTTAGGTCGCAA-
-----------ATGATGCATTTTGGCCACCGAATATATGCACTATAGTCGTTAACTAGTAATATATACTATTTCCTATGT
AAACTAATATAATATAAGACATTACTTTAGTGATAAAAAACGTCTTATATTATTTTATAGAGAGTAGTTGATAATTATCA
TGCTAATACATGTTTTTGGTTAGATTAAATTCAGCTTAAATTGCCCCATAAATTTGTAGGAAATGACAGCAAAAGAAGAA
GGCAGCCGTTTGGCAACACTGTATTTACACACATGCCTAACAAGCGTCACTTCATATGATGGATGGCGATCGACGATACG
GCGAATCTACGGTAGTTAGTCTTAGGCAATACTACTTAGAGCATCTACAATCACAACTCACAAATTCCATCCAACAAACG
CTCGCGGATGCGCCCGGACGCTTCCGCGGACAATGACCAGACAACACACTAAAAGTCCTTTCCACGACCAGATACCTCAT
TTTCGAGTCATCAAATCCATACAATTACATGCAACGTAAACCTAGTCTAAATATGCGCCGAAGACCGTCCTTGTTGTTTC
GCTCTGTCCACGTCTGACGGATGGGTAAGCCCCTCGAAGTGGAGGTGTGGTCACCGACGAGGT
>chr5A_1
CTGATGAGCCCCATCCAGCCATGATACATGATACACTGGCGAGTTTCTGATTAAAACCCACTGTATTTGCTGGCAATCGC
GCAGGTTATGGACTACGCGTCACTCCCGCACTTCTGCAAGAGGGAAGGGTCCGGTTCAGGCTCGTCGTCGGATGAAGTCG
ACTGCTACTCGTACGACCATCCATTCCACCAGGAGCTGTACAACTATGTGAAGCAGCAAGCTCTGAGGAACCAGGACAGC
GTCGGCCCCGCGAAGCAAGGGTCGATGCATGTGAGGGTGCCGACGCCGGACCTGGAAGAGGCCAAGATCATGGAGACGAT
CCAGTCGGAGCTCCACAGCCTCAAGGGAGGCGACGGCATTTCCCGCTCCTTCAGCAGGATCACCATCGAAGGACCATGAT
GGTATTATTTCCTGCTCATATCCAAGATCGCCATGGATGTGACCCATGATGATCGGAGTGCCTCGAGATGCGCGGAGCAG
GTAATCGCTTATTTTATCTTATTTGACGCCAGGAAATTATTCTGGGGTTTATAGCAGTTCTTGCTTGCATTGTAACCGCT
GGCTGAAAAGCTCGACTAGG-----ATCATATCGGTAGAGGAAGCAGCAGTAGTAGTAATAGTAGTAGTAAAACAACGGA
TTCTAATAACCGAGTGAGTCTGTATCGTGTTGTCGAGGATGGTAGTAATTAGTT-TGATTAACCTGGCTA----ATGGAT
GTACCATTTGCGTTTTACTGTTTCCATCCATGCTTCTCATGGCAGGGAAATTACCATGCTCCCAGACATGAGTAGCACCA
TCTCTATGTATCGTATCAATCATCAGTATATAGTATATGTATGTATATGTAATCGCCCTCTGATGTTGCAACTGGTATTA
CCATTATGTATTTGGT-----GTTTACCTG-----------AAAAAGAATCTGCTGTCTGTTTCAACTTGCATGCACTGA
GTCGGATCTTGGCCAAGCACTGATAACTGCTCCCTGCCTCCATAAATAGACTTGCGTTTTGGTTGCCCGCGGTTACCGCA
GCAAGGCAGCATATAAGAT-----------GTGTCACCTTCCATTCACCTCACCTCATCTCACCTAGCTAGCAACAGAGA
CCAAATCTCTGCATCTTGCGGCGAGCTTTCTTTCACCAGAAGCGGGGGGGCGATGGAGCCGATGGCGATCATGACGGTTA
CCGGCGGCGTGCTCGGGCCGGTCTTCGTGCTGCTGTCGCGGATCCAGCCGGTCGTCGACTTCTTCCGGCGGCTCTGCGAC
TGTCTCCGCCACCCTAGCCGCCGCCCCGCCAGGCCGGTCGTAGCGCCGTGGAAACGTCAGGCTGCACAGGAGTGATATTT
TTCTATGGAATTTTCTGTTCTAACAGAAAGAGAGAGATAGGTGTTCACTG----TGGATGGATGGATGATTGAGCCATAT
GCAGTATGTACGTGACTGCATGTTCTTGTTTTACCGGGTGTACGTAT--ATA-----TACATATGCTTATTATGGAAACA
AAATTAATATTCCTACTATCAGCTTGTACAAACAAATTACGGAAA-----------------------------------
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>SNPs
----------------------------------------------------S---------------------------
------------------------------------------------------------------------S-------
----------------------S---------------------------------------------------------
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--------------------------S------------------------------------S----------------
-S-S--S---------------S---------------S---------------------S-------------------
-------S------------------------------------------------------------------------
-------S------------SSSSS----------------------S--------S--------S--S-----------
------------------------------------------------S---S-S---------------SSSS------
------------S------------------------------------------S----------------S-----S-
------------S---------SS----------------------------------S---------------------
----------------------------------------S-----------S-S--S----------------------
--------------------------------------------------------------------------------
-----------------------S--------------------------------------------------------
----------------------S---------------------------------------------------------
-------------S------------------------------------------------------------------
---------------------------------------------------------------S----------------
----S--------------------------S---------S--------------------------------------
---------------------------S------------------------SSSSS------S----------------
------------------------------------------------------------SS------------SS---S
-S----S--S----------SS-----------S-S-------SS----S---------------S---------S---S
----SS-----------------S--------S-----------------SS--S-------S--S----S-------S-
-S--S------------S-S-------S-S--------------S-SS--------------------------------
-----S---S------S--------------SS----------SSSSSS--------S---S-----S--S---------
--------------S-----S---SSS-------S-SS----SS-SS-SSSS----------------------------
------S---S-------SSSSSSSSSSSSSSSSSSSSSSSSS--------S--S--------S-SSS-SS---------
----------SSSSSSSSSSSSSSSSSSSSSSSSSSSS------S--------S-------S-S---------------S
SSSSSSSSSSS------------SS------------------------------------------S--------S-S-
----------S-S-SSSSSS-SSS-S-----------------------------------------------------S
----S--S--------------------------------------S---------S-----------SS--S-S--SS-
S-SSSS-SS-----S---------------------------------------------------------------S-
----S-----SSS------------S---------------------S-----------S-S----------SS------
-S------SS---S-S-------S--------S-S---S---------------S---SS-----S-S-S-S-----S--
--SS--S---------------S------------S---------------SS--S-----S-----------S----S-
---S------S---------SS--S-S--------S-----------S----SS--S------
>forward_568
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--------------------------------------------------------------------ATTGTAACCGCT
GGCTGCAT------------------------------------------------------------------------
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>reverse_1650
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-------------------------------------------------GTAGTTTGCAAGCACGGCAA-----------
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>forward_581
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-GCTGCATAGCTCGAGTAGGA-----------------------------------------------------------
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>reverse_2038
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-------------------------------------AGAGAGGAGGAGGAGGAGGA-----------------------
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