>input_sequence_73679
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-----------------------------------------CCATATAAGTACCAGCATCCAAGGCCGCGATAGCAAAAG
CCTTCCCACTCCCTTCCCTCCCATCCCAGACGCCAC-AGACCCGACGACGGCCGCCGGCCGGCAAGAAGGCGTCGTCC--
----------ATGGGGCCCCAGCAGGACCGGTCGGCGTCCAAGGCGCTCGCCAACGGCACGGCGGTGGCGCCCGAGAGGA
AGGACGGCAAGGTGGTGCACTACAAGGAGTGCCAGCGCAACCACGCCGCCGGCATCGGCGGCTACGCCGTGGACGGCTGC
CGCGAGTTCATGGCGTCCGCCCCCGCGGGCGCCGAGGCGCTCCTCTGCGCGGCGTGCGGCTGCCACCGCAGCTTCCACAA
GCGCGAGGTGGAGGCCGTCGAGTGCGACTGCTCCTCCGACACCTCCGGCCGGTGATCGCCGCCGCCCGTCGCCGCCCAAG
CCCGCTGTTCTCTTGCTGGCTCGTCACGGGTAGACCGGCATCTATCGGCAGGTAAGGCGTGGTGGACGTTGAGATGACTC
CATTCGATCTCGATCCATCT----ATCAAATACATATATATGGCCCGGTTAATTTATCTTCTTCCTCCTCCTCCTCTTCC
TCCTGGTATTGGGATTAATTTGGTGCTCGATTGCGTGTGATGTA------------------------------------
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>chr5A_1_TraesCS5A01G142700
CACATGGCATGGGGTGTCCCACACATCAGTAACAACGACGGCTAGCAATCAACTCCCTTGATCAACGACAAGCACCTGTT
TGGGCATTGGTGAGGGTGGGCGGCATGATAAAGGGGAAAAGTGAGCAAAGTTAGTTTGCCCAAGCAAAACTGAGCACAAC
TTTGTAACCAGGCCACAAAAATAGAAAACTCTTTTATTAAATTATTCAACGGAGTACAAGAACATAAAAACATAGATCAA
CCCAAAGTCATTTTTCTGGCGATCTCTGTCACCATCCCTATAAGCTTGATGATGTGTCGTGACCTCGTATCAACCCACAT
CATCTAATCCAGTAGCCTCACCAAGCCGCCCCACACTGAGTCGAGAGCACCAACCGGTCTAGCATACCCTCACCTCTCTA
GAATCCGTCGTCTTCATCTTCCGCTGTCCCAACTTCAAAAGAGATCAACGCATTGGTCTTGCCAAGCCCAACTGTCGTCG
ACGTCACCACGACACTAGACAACGCCATCATTCTGCGCGCGTCCATCATAGAATTTACCAATATGAAGAAAAAACATGAA
AATATCAACACGACAAATGGCTACACGAATCATGGCGCCAACCGGTTACGTAAACAAAAAAAAAATGAAACTCCATGGGC
ACTAGCACCCACGGTTTTATTGATATAGAAGAAGCATCCCTCATGAGAATTCCAGAAATTCGTCCCCGACGTGGATCGAA
CTCTGGTCGTTAGGTTTACAATCATGCGCCCCCAACCGGTTACGTAAACAAGAAATAAATCCAGACCACACACGATACCA
TCGTGTGGACCGAATGCTCGCTCCAAATTACCCAGGTGCTCCGGCGCATGAT-CTAAAACTAGAACACTGTGCGCACTGG
TGCCCGTTCTTGTAACCTTGAGAGACTCCTTTTTTCTCCTAACGCAATTACACGCAAAGCCTTTGCGTGGCCGCGGAAAA
GAAATGGAGAAAATCATCGCCCCTCCCTCTCGTGCTCCTGCCCATATAAGTACCAGCATCCAAGGCCGCGATAGCAAAAG
CCTTCCCACTCCCTTCCCTCCCATCCCAGACGCCAC-AGACCCGACGACGGCCGCCGGCCGGCAAGAAGGCGTCGTCC--
----------ATGGGGCCCCAGCAGGACCGGTCGGCGTCCAAGGCGCTCGCCAACGGCACGGCGGTGGCGCCCGAGAGGA
AGGACGGCAAGGTGGTGCACTACAAGGAGTGCCAGCGCAACCACGCCGCCGGCATCGGCGGCTACGCCGTGGACGGCTGC
CGCGAGTTCATGGCGTCCGCCCCCGCGGGCGCCGAGGCGCTCCTCTGCGCGGCGTGCGGCTGCCACCGCAGCTTCCACAA
GCGCGAGGTGGAGGCCGTCGAGTGCGACTGCTCCTCCGACACCTCCGGCCGGTGATCGCCGCCGCCCGTCGCCGCCCAAG
CCCGCTGTTCTCTTGCTGGCTCGTCACGGGTAGACCGGCATCTATCGGCAGGTAAGGCGTGGTGGACGTTGAGATGACTC
CATTCGATCTCGATCCATCT----ATCAAATACATATATATGGCCCGGTTAATTTATCTTCTTCCTCCTCCTCCTCTTCC
TCCTGGTATTGGGATTAATTTGGTGCTCGATTGCGTGTGATGTAATTAACATATCCGTACGTGTAGCATATGCGTGTTGA
TGAGAGTCCAAACTGGTGCGTGTGTGTGTAGATCGATCGGTGAGATGAACACCTTGTAATTTGTACAGATTTGTGTTTCT
TGTTTGGAACCAGCAGTTAATAAGATATGCCTCTGAATTATGGATTGACATTATGAGTAGAGTAGAGTAGATGCCTTTGC
TTCACTGAATGGAATTACACTTTGACTCATCGTGAGCTTTACTTCACCGAGTGCGCGCGGCTGTAAAATTATGTCATCCT
GTCACTGGCTAGTAGCTAGCATGGGTCGTTTAGGTA-----TTGTTTTCAATTAGCACGGCCGGAATATAGTAACCTAAA
TTCGAGCCGAAGAGAAGCCGGATC-------TCTTCGTGCGTGGTTCCTATCAGCCAGCTGAACTAGGCTGGGTTCCCAT
CATTCGGATCTCCGTGCCAGAAAAGTTTGAGAGCCAACCGCTACCCATTTGTTGGCATGCATGTTGCAGTTCAAAACAGT
GCTCAAATTAAGGTTAATGATGCTGTCAGTGACTGTAATAATTTCTTAACCTCTGCATCAAAGTCAAGGAGCAAGCGTTC
TTTTGCTTTCAATCAAGGATATTTTTTGGTGAGAGCTTGAAGGGTTATCTTAGCTATCAAAACCAGATCAAGCGTACGTA
GTGTCGCTGTACAATTAAATCTCACTGCGCTGTCACTTTACTAATATCGCTCGCTCGCACCAGCTCTTGTCAAGCGTGGA
GACTGGCCGTCACTATCACAGTGCCATATCTATTGCTGCCGCCAACTGCCAACAGTGCCGTAGCCACCATGTTCTTGTGA
TATTCCTGAACCTACTTTTCCAACGACTTTCAGGGCTAACCAACTAATCCCAGCCACTGGAAAACCCAGCAGGGCACGTG
ATTTCCCAACCAACGCGGATGGAAAACGTGACTCCG--TATACCCAATCTAAAGCGCA------GGCAGGTCATCGCGAG
AGATATCCCGTTCCTTTTTTACAA
>chr5D_1
CACGTGACACGGGGTGTCCCACACGTCAGTAACAGCGACAGCTAGCAATCAACTCTCTTGATCAACGACAAACACCTGTT
TGGGCATTGGTGAGGGTGAGCGGCACGATG-AGGGGAAAAGTGAGCAAAGTTAGTTTGCCCAGGCAAAACTGAGCACAAC
TTTGTAACCAGGGCACAAAAATAGAAAACCCTTTTATTAAATTATTCAACAGAGTACGAGAACACAAATACATAGATCAA
CCCAAAGCCATCTTTCTCGCGATCTCCGTCACCAACCCTGTAAGGTTGATGATGTGTCGTGACCTCGCATCAACCCACTT
CGTCTAATCGAGTAGCCTCACCAAGCCGCCCCACAGTGAGTTGAGAGCATCATCCGGTCTAGCATATCCTCACCGCTCTA
GAATCCATCGCCTCCATCTTCCGTCGTCCCAATTTCAAAAGAGATCAAAGCAATGGCCTTGACAGGCCCAATTTTAGTCG
ACGTCACAATGACACCAGACAACGCCGCCGTTCTACGCACGTCCATCATAGAATTTACCAATTACAA-AAAAAACATGAA
AATATCAACACGACAAATGGCTACACGAATCATGGCGCCAACCGGTTACGTAAACAA-----------------------
--------------------------------------------------------------------------------
---------------------------------------------------GAAATGAATCCAGACCACACACGATACCA
TCGTGTGGACCGAATGCTCGCCCCAAATTAACCAGGTGCTCCGACGCATGATCCTAAAACAAGAACACTG-------TGG
TGCCCATTCTTGTAACCTTGCGAGACTCCTTTT-TCTCCTAACGCAATTACACGCAAAGCTTTTGCGTGCCCGCGGAAAA
GAAATGGAGAAAACCATCACCCCTCCCTCTCGTGCTCCTGCCCATATAAGTACCAGCATCCAAGGCCGCGATAGCAAAAG
CCTTCCCACTCCCTTCCCTTCCATCCCAGACGCCCATAGCCC---CGACGGCCGCCGGCCGGCAAGAAGGCGTCGTCCGC
ACCGTCGCCCATGGGGCCCCAGCAGGACCGGTCGGCGTCCAAGGCGCTCGCCAACGGCACGGCGGTGGCGCCCGAGAGGA
AGGACGGCAAGGTGGTGCACTACAAGGAGTGCCAGCGCAACCACGCCGCCGGCATCGGCGGGTACGCCGTGGACGGCTGC
CGCGAGTTCATGGCGTCCGCCCCCGCGGGCGCCGAGGCGCTCCTCTGCGCGGCGTGCGGCTGCCACCGCAGCTTCCACAA
GCGCGAGGTGGAGGCCGTCGACTGCGACTGCTCCTCCGACACCTCCGGCCGGTGATCGCCGCCGCCCGTCGCTGCCCAAG
CCTGCTGTTCTCTTGCTGGCTCGTC-CGGGTAGACCGGCATC----GGCAGGTAAGGCGTGGTGGACGTTGAGATGACTC
CATTCGATCTCGATCGATCTATCAATCAAATACATATATATGGCCCGGTTAATTTATCTTCTTCCTCCTCCTCT------
TCCTGGTATTGGGATTAATTTGGTGCTCGATTGTGTGTGATGTAATTAACATATCCGTACGTGTAGCATATGCGTGTTGA
TGAGAATCCAAACTGGTGC----GTGTGTAGATCGATCGGTGAGATGAACATGTTGTAATTTGTACAGATTTGTGCTTCT
TGTTTGGAACCAGCGGTTAATAAGATATGCCTCTGAATTATGGATTGACATTATGAGT-------AGTAGATGCCTTTGC
TTCACTGAATGGAATTACACTTTGAC---TCGTGAGCTTTACTTCACCGAGTGCG----GCTGTAAAATTATGTTATCCT
GTCACTAGCTAGTAGCTAGCATGGGTCATTTAGGTA-----TTCTTTTCAATTAGCACGGCCGGAATATAGTAACCTAAA
TTCGATCCGAAGAGAAGTCGGGTC---------TTCGTGCGTGGTTCCTATCAGCCAGCTGAACTAGGCTGGGTTCCCAT
CATTTGGATCTCCGTGCCAGAAAAGTTTGAGAGCTAACCGCTACCCATTTGTTGGTATGCATGCTGCAGTTTAAAACAAT
GCTCAAATTAAGGTTAATGATGCTGTCAGTGACTGTAATAATGACTTAACCTGTGCATCAAAGTCAAGGAGCAAGCGTTG
TTTTGCTTTCATTCAAGGATATTTTTTGGTGAGAGCTTGAAGAGATATC-TAGCCATCAAAACCAGATCAAGCGTACGTA
CTGTCGCTGTAGAATTAAACCTCACTGCGCTGTCACTTTACTAATATCGCTC----GCACCAGCTCTTGTCAAGCGTGGA
GACTGGCCATCACTCTCACAGTGCCATATCTATTGCTGCCGCCAACTGCCG---GTGCCGTAGCCACCATGTTCTTGTGA
TATTCCTGAACCTACTTTTCCAACGACTTTCAGGGCTAACCAACTAATCCCAGCCACTGGAAAACCCAGCAGGGCACGTG
ATTTCCCAACCAACGATGATGGAAAACGTGACACCCTATATACCAAATCTAAAGCGCGCGGCGCGGCAGGTCATCGCGAG
AGATATCCCGTTCCCTTTTACAA-
>chr5B_12
-----------GGGTGTCCAGCACGTTAGTAACAACGACGTCTAGCAATCAACTCCCTAATCG-ACGACAAACACATGTT
TGGGCATTGGTGGGGGTGAGCGGCGCGATGAAGGGGAAAAGTGAGCAGAGTTGGTTTGCCCGGGCAAAACTGAGCACAAC
TTTGTAACCAGGGCACAGAAATAGAAAATCCTTTTATTAAATTATT-AACGGAGTCCGAGAAAACAAATATATTGATCAA
CCCAAAGCCATCTTTTTGGCGATCTTTGTTGCTACTCCTGTAAGTTTGATGATGTGCCCTGACCTCGCATCAACCCACAT
CATCTAATGCAGTAGCCTCATCAAACCGCCTCACAGCGAGCCGAGAGCACCAACCGGTCTAGCATACCCTCACCGCTCTA
GAATTCGTCGTCTCCATCTCCCGTCGTTTCAACTTCAAAAAAGATCAACGCATTGATCTTGCCAAGTCCAAC-GTTGTCG
GCGTCACCACGACGCCAGACAACGCCACTGTTCTCCGGGCGTCCATCATAAAATTTAGTAATACGAAGGAAAAACATGAA
AATGTCAACACCACGAATGGCTACACGAATCATGGCGCCAACTGGTTACGTAAACAA-----------------------
--------------------------------------------------------------------------------
---------------------------------------------------GAAATAAATCCAGACCACGCACGATACCA
TCGTGTGGACCGAATGCTCGCCCCAAATTAACCAGATGCTCCGACGAATGATCCTAAAATAAGAACACTGTGCGCACTGG
TGCCCATTCTTGTAACCTTGCGAGACTCCTTTT-TCTTCCAATGCAATTACACGTAAAGCTTTTGCGTGCCCGCGGAAAA
GAAATGGAGAAAACCATCACCCCTCTCTCTCGTGCTCCTGCCCATATAAGTACCAGCATCCAAGGCCGCGATAGCAAAAG
CCTTCCCACTACCTTCCCTTCCATCTCAGACGCCAC-AGCCC---CGACGGGCGCCGGCCGGCAAGAAGGCGTCGTCCGC
ACCATCGTCCATGGGGCCCCAGCAGGACCGGTCGGCGTCCAAGGCGCTCGCCAACGGCACGGCGGTGGCGCCCGAGAGGA
AGGACGGCAAGGTGGTGCACTACAAGGAGTGCCAACGCAACCACGCCGCCGGCATCGGTGGGTACGCCGTCGACGGCTGC
CGCGAGTTCATGGCGTCGGCCCCCGCGGGCGCCGAGGCGCTCCTCTGCGCGGCGTGCGGCTGCCACCGCAGCTTCCACAA
GCGCGAGGTGGAGGCCGTCGACTGCGACTGCTCCTCCGACACCTCCGGCAGGTGATCGCCGCCGCC-GTCGCTGCCCAAG
TCCGCTGTTCTCTTGCTGGCTCGTC-CGGGTAGACCGGCATC----GGCAGGTAAGGTGTGGTGGACGTTGAGATGACTC
CATTCGATCTCGATCGATCT----ATCAAATACATATATATGGCCCGGTTAATTTATCTTCTTCCTCCTCCTCT------
TCCTGGTATTGGGATTAATTTGGTGCTCGATTGTGTGTGATGTAATTAACATATCCGTACGTGTAACATATGCGTGTTGA
TGAGAATCCAAACTGGTGC----GTGTGTAGATCGATCGGTGAGATGAACATCTTGTAACTTGTACAGATTTGTGCTTCT
TGTTTGGAACCAGCAGTTAATAAGATATGCCTCTGAATTATGGATTAACATTATGAGT-------AG---ATGCCTTTGC
TTTACTGAATGGAATTACGCTTTGAC---TCGTGAGCTTTACTTCACCGAGTGCG----GCTGTAAAATTATGTTATCCT
GTCACTAGCTAGTAGCTAGCATGGGTCATTTAGGTAGTATATTGTCTTCAATTAGCACGGCCGGAATATAGTAACCTAAA
TTCGAGCCGAAGAGAAGTCGGGGATCGAGGATCGTCGTGACTGGTTCCTATCAGCCAGCTGAACTAGGCTGGGTTCCCAT
CATTTGGATCTCCGCGCCAGAAAAGTTTGAGAGCTAACCGCTACCCATTTGTTGCTATGCATGTTGCAGTTTAAAACAGT
GCTCAAATTAAGGTTAATGATGCTGTCAGTGACTGTAATAATTACTTAACCTGTGCATCAAAGTCAAGGAGCAAGCGTTG
TTTTGCTTTCATTCAAGGATATTTTTTGGTGAGAGCTTGAAGAGATATC-TAGCCATGAAAACCAGATCAAGCGTACGTA
GTGTCGCTGTAGAATTAAACCTCACTGCGCTGTCACTTTACTAATAGAGCTC----GCACCAGCTCTTGTCAAGCGTGGA
GACTGGCCATCACTCTCACAGTGCCATATCTATTGCTGCCGCCAACTGCCG---GTGCCGTAGCCACCATGTTCTTGTGA
TATTCCTGAACCTACTTTTCCAACGACTTTCAGGGGTAACCAACTAATCTCAGCCACTCGAAAACCCAGCAGGGCACGTG
ATTTCCCAACCAACGCGGATGGAAAACGTGACTCCG--TATACCAAATGTAAAGCGCA------GGCAGGTCATCGCGAG
AGATACCCCGTTCCTTTTTACAA-
>SNPs
---S--S--S--------------S----------------------------------------------S--------
------------------S------S---S--------------------------------S-----------------
------------S----------------S---------------------------S------S---S-----------
-------S---S----------------------S----S----S----------------------S------------
-----------------------------------S--------------------------------------S-----
-------------S---------SS--------------------------------------------------S----
---------------S-----------S-S----S----------------------------S----------------
---------------------------------------------------------SSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----------------------------
---------------------S--------S------------S----------------S-------------------
-----S--------------S------------S--------------------------S--------S----------
-------------S----S-------------------------------------------------------------
-------------------S-------------------S--SSS-----------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------S------------------
--------------------------------------------------------------------------------
---------------------S--------------------------------------------------S-------
-------------------------S----------------SSSS----------------------------------
---------------S---------------------------------------------------------SSSSSSS
---------------------------------S----------------------------------------------
-----S-------------SSSS----------------------------S-----------------------S----
----------------------------------------------------------SSSSSSS---------------
--------------------------SSS--------------------------SSSS---------------S-----
------S--------------------S----------------------------------------------------
-----------------S---S----------------------------------------------------------
----S-----------------------------S--------------------S---------------S--------
-------------------------------------------S--------S--------------------------S
-----------S------------------------------S-S----S----S-------------------------
-----------S-------S--------------------------------SSSS------------------------
--------S-----S-----------------------------------SSSS--------------------------
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--------------------------------------------S-----------------------------------
-------------------SSS-S
>forward_844
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------------------------AAATTACCCAGGTGCTCCGG------------------------------------
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>reverse_2340
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-------------------TCTCACTGCGCTGTCACTTT-----------------------------------------
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