>input_sequence_73653
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-------------------------------------------ATGGCCGCTGCTCGGTGCTCCTCTTTCCCTGCTCTCT
GCGTGGTGGTAGTAGTAGTAGTGGTACTCATCGGCGGTGGTGGCGCCGAGTCCGCCGCGGACCAAGAAGGCCTCAAAATC
CACCTTCACTTCTACTTCCATGAGGTCAACGCCGGCACGCCCAACGCCACCGTCCTCAACGTCGCCAGCCTGCACAGGTA
AGCATCCAA-----AGCTTCGTATGCATCTGCCGGCGCATATCAGATATCACATGTATATTCACGTGGAATAATATGGCG
CAGGAACTCGTCGACGTTCGGGGACCTGAACGTGTTCGACAACGCGCTGCGGGCGGGGCCGGACCCAGCGTCGCGGCTCG
TTGGCAGGGCGCAGGGCTTGGCGCTCCATGCGTCGCTTGACGAGTCCGGCGGGCTCACGGCCATCACCTTCGCCTTCTCC
GACTACGGCGCGTACAGCGGCAGCACGCTGGCGACGCTGGGCCACATCGGGGTGTCTGGCCCGGCGGAGCGGAGCATCGT
GGGCGGCACGGGCAAGCTCCGGTTCGCGCGCGGGTACATGGTCAGCAGCCTCCTCAGCTCCACGGACACCTCCATCGTCG
TCGTCTTCGACATGTACTTCACCCTGGCCCGCTGA---------------------------------------------
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>chr7A_1_TraesCS7A01G526800
TTTACAGATACAAATTTTTTTGACAAACTAGACGGCTTACATGGCGTGCACGTGCACTTCGGCCGGCCTGACGTGGCTGC
GGACGGCGAGGACGTTCCTGGAGAGGTTGATCACGGAGTTGCGTGCGGCGATGGCGTCCACGTACGCCACGTCACCGCGA
CGACCTGCACGGAGGCGACATCACGTACGGCGGGCGACTCCAACAACGTTCGCGCCGGCCAGATCCCGGGTGAAGACGGG
GAA-AATGGTCGGCAATCGGTGGGGAAAGGCGGCGATCGGCCGGACGGGAAGACGTTGGAATTGGCAGCGTGATCACGGC
TAGATCGGCGGGGAAAGGCGGCGATCGGCGGGTAAGGGCGGCGATCGGCGGGGCGGGGCGGCGTTCGAACGGGCCGCGTG
ATCAACGCAGGTCGTGG--TTTTTTTGTTTCGCACGACGGAGAGAGGGTAGATGCGAGCCGGCCGTATCGGCTCGAGCCG
TGCGCTCGGCTCTACCTGTATGGCCACGCCGCATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNCTCTTCATGTTATGATTCCGCTGGTTCCATCCGATTCACTTGCATAATGCATTTGGTTGGTAAGAGCTACACACGT
CAGGACAGGGACTCCCCACCGAAAACATGTGCAAGCAGTTGGGTGCGTTTGTGATAAACAGAGCAACCACCGCGGGTGAA
CCTGCAGGATAGCTCAAACTCTCACAGGAGCCTGATCCAGAGCATGGCCGCTGCTCGGTGCTCCTCTTTCCCTGCTCTCT
GCGTGGTGGTAGTAGTAGTAGTGGTACTCATCGGCGGTGGTGGCGCCGAGTCCGCCGCGGACCAAGAAGGCCTCAAAATC
CACCTTCACTTCTACTTCCATGAGGTCAACGCCGGCACGCCCAACGCCACCGTCCTCAACGTCGCCAGCCTGCACAGGTA
AGCATCCAA-----AGCTTCGTATGCATCTGCCGGCGCATATCAGATATCACATGTATATTCACGTGGAATAATATGGCG
CAGGAACTCGTCGACGTTCGGGGACCTGAACGTGTTCGACAACGCGCTGCGGGCGGGGCCGGACCCAGCGTCGCGGCTCG
TTGGCAGGGCGCAGGGCTTGGCGCTCCATGCGTCGCTTGACGAGTCCGGCGGGCTCACGGCCATCACCTTCGCCTTCTCC
GACTACGGCGCGTACAGCGGCAGCACGCTGGCGACGCTGGGCCACATCGGGGTGTCTGGCCCGGCGGAGCGGAGCATCGT
GGGCGGCACGGGCAAGCTCCGGTTCGCGCGCGGGTACATGGTCAGCAGCCTCCTCAGCTCCACGGACACCTCCATCGTCG
TCGTCTTCGACATGTACTTCACCCTGGCCCGCTGACACGCACGCGCGGGGAACCAACGGAGTACAAGG-TGTACTTTCGA
AGC--AAGCTGTTCGAGAGTTGCTGTCATGTGTGCCCCCATAAAAAGAGAGTTGCTGTCATAGTACTACAATCATCGCAT
AGATTATTACTCATATTTTATTTTCTAGTAGTATATATAAAATAAAAAGGACTGCCCTTGGTTTGGTCAGTGGTGCTTAT
TGGGAATTGTTTGGTCAAACGTGACTGCCGGAAACTCACATCGGCATGATATATGACAACTATGTGACACATGTGCTAAG
CAATCCGAACTATTAAAAGAAACATGATGTATGACAAGTGCCATCCATGGAATATTCCAATGAAATTTTGCAAGGAAAAG
ACAAATCCGTTCTCAGGGCAGTTAGTGGCGGAGCCACCTCCCGGTTACCCGGGGCAACTGCCCGGGCTCAGCCATGCATT
CTGGTTTGAATAATATCAGTAAGTGGAGAGCTAATCATCATTTTATAGGGGCAAACAACTGATAGACAACAACTTCGTGT
ACTTTGCTGTGGCGAGCTAACCACCATTTTATAGGGGCAAACAACTGATAGACAACAACTCCGTGTACTTTGCTGTGGCT
CGCCTGCGGAGCTGGCTCCGCCACTGAGGGCAGTAGTAGTATACCTAGGGACAAGATTGGCAATGGTTCGAGGGTACTTT
TTCCTACGCCTCACCTCCCTGCGAATAGATGGCCAAAATCATTGCTTTGGCCTTTTAGTCATAGTTTAGCATGATTTGAC
CTCGGTTCGAAAGTTTGCCCGGATTTAACCCTTTTGGTGACCACCACACAGGCCGGCGATTAGGTTTCATTACATATCAC
CGTTGCCTTCGGTGGTAGGTTCATAGTCAACGCGTCACTACCCCAGACTACCCTTATGTGGCAATGATCCTACTGCTCTA
CCCAGCGGCGGTAGGTCATATACCTACGGCGGTAGATCCTTGAAGGAGTAAATGCTTGGGGGTGCGGGTGGGCCACCT
>chr7A_1
TTTACAGATAC-AATTTTTTTGACAAACTAGACGGCTTACATGGCGTGCACGTGCACTTCGGCCGGCCTGGCGTGCCTGC
GGACGGCGAGGACGTTCCCGGAGAGGTTGATCACGGAGTTGCGAGCGGCGACGGCGTCCACGTAGGCCACGTCACCGCGA
CGACCTGCATGGAGGCGACATGACGTACGGCGGGCGACTCCAACAACGTCCGTGCCGGCCAGATCCCAGGTGAAGACGGG
GAA-AATGGCCGGCGATCGGCGGGGAAAGGCGGTGATCGGCCGGACGGGAAGACGTTGGAATTGGCAGCGTGATCACGGC
TAGATCGGCGGGGAAAGGCGGCGATCGGCGGGTAAGGGCGGTGATCGGCGGGGCGGGGCGACGTTGGAACGGGCCACGTG
ATCAACGCAGGTCGTGGTTTTTTTTTGTTTCGCACGACGTGGAGAGGGTAGATGCGAGCTGGCCGTATCGGCTCGAGCCG
TGCGCTCGGCTCTACCTGTATGGGCACGCCGCATA---------------------------------------------
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>chr6A_1
TTTACAGATACAATTTTTTTTGACAAACTAGACGGCTTACATGGCCTGCACGTGCACTTCGGCCGGCCTGGCGTGGCTGC
GGACGGCGAGGACGTTCCCGGAGAGGTTGATCACGGAGTTGCATGCGGCGACGGCGTCCACGTAGGCCACGTCACCACGA
CGACCTGCACGGAGGCGACATCACGTACGGCGGGCGACTCCAACAACGTCCACGCCGGCCAGATCCCGGGTGAAGACGGG
GAA-AATGGTCGGCGATCGGCGGGGAAAGGCGGCGATCGGCCGGACGGGAAGACCTTGGAATTGGCAGCGTGATCACGGC
TAGATCGGCGGGGAAAGGCGGCGATCGGCGGGTAAGGGCGGCGATCGGCGGGGCGGGGCGGCGTTGGAACGGGCCGCGTG
ATCAACGCAGGTCGTGG--TTTTTTTGTTTCGCACGACGGGGAGAGGGTAGATGCGAGCCGGCCGTATCGGCTCGAGCTG
TGCGCTCGGCTCTACCTATATGGGCACGCCGCATA---------------------------------------------
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>chr4A_1
TTTACAGATACAATTTTTTTTGACAAACTAGACGGCTTACATGGCGTGCACGTGCACTTCGGCCAGCCTGGCGTGGCTGC
GGACGGCGAGGATGTCCCCGGAGAGGTTGATCACGGAGTTGCGTGCGGCGACGGCGTCCACGTAGGCCACGTCACCGCGA
CGACCTGCACGGAGGCGACATCACGTACGGCGGGCGACTCCAACAATGTCCGCGCCGGCCAGATCCCGGGTGAAGACGGG
GAA-AATGGTCGGCGATCGGTGGGGAAAGGCGGCGATCGGCCGGTCGGGAAGACGTTGGAATTGGCAGCGTGATCACGGC
TAGATCGGCGGGGAAAGGCGGCGATCGGCGGGTAAGGGCGGCGATCGGCGGGGCGGAGCGACGTTGGAACGGGCCGCGTG
ATCAACGCAGGTCATGG---TTTTTTGTTTCGCACGACGGGGAGAGGGTAGATGCGAGCCGACCGTATCGGCTTGAGCCA
TGCGCTCGGCTCTACCTGTATGGGCACGCCACATA---------------------------------------------
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>chr2A_1
TTTACAGATAC-AATTTTTTTGACAAACTAGACGGCTTACATGGCGTGCACGTGCACTTCGGCTGGCCTGGCGTGGCTGC
GGACGGCGAGGACGTTCTCGGAGAGGTTGATCACGGAGTTGCGTGCGGCGACGGCGTCCACGTAGGCCACGTCACCGTGA
CGACCTGCACGGAGGCGACATCACGTACGGCGGGCGACTCCAACAACGTCCACACCCGCCAGATCCCGGGTGAAGACGGG
GAA-AATGGTCGGCGGTCGGCGGGGAAAGGCGGCGATCGGCCGGACGGGAAGACGTTGGAATTGGCAGCGTGATCACGGC
TAGATCGGCGGGGAAAGGCGGTGATCGGCGGGTAAGGGCGGCGATCGGCGGGTAAGGGCGACGTTGGAACGGGCCGCGTG
ATCAACGCAGGTCGTGG--TTTTTTTGTTTCGCACGACGGGGAGAGGGTAGATGCGAGCCGGCCGTATTGGCTCGAGCCG
TGCGCTCGGCTCTACCTGTATGGGCACGCCACATA---------------------------------------------
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>chr2A_1
TTTACAGATAC-AATATTTTTGACAAACTAGACGGCTTACATGGCGTGCACGTGCACTTCGGCCGGCCTGGCGTGGCTGC
GGACGGCGAGGACGTTCCCGAAGAGGTTGATCACGGAGTTGCGTGCAGCGACGGCGTCCACGTAGGCCACGTCACCACGA
CGACCTGCATGAAGGCAACATCACGTACGACGGGCGACTCCAACAACGTCCGTGCCGGCCAGATCCCGGGTGAAGACGGG
GAA-AATGGTCGGCGATCGGCGGGGAAAGGCGGAGATCGGCCGGATGGGAAGACGTTGGAATTGGCAGCGTGATCACGGC
TAGATCGGCGGGGAAAGGCGGCGATCAGTGGGTAAGGGCGATGATCGGCGGGGCGGGGCGACGTTGGAACGGGCCGCGTG
ATCAACGCAGGTCGTGG--TTTTTTTGTTTCGCACGACGGGGAGAGGGTAGATGCGAGCCGGCCGTATCGGCTCGAGCCG
TGCGCTCGGCTCTACCTGTATGGGCACGCCGCATA---------------------------------------------
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>chr1A_1
TTTACAGATACAATTTTTTTTGACAAACTAGACGGCTTACATGGCATGCACGTGCACTTCGGCCGGCCTGGCGTGGCTGC
GGACGGCGAGGACGTTCCCGGAGAGGTTGATCACGGAGTTGCGGGCAGCGACGGCGTCCACGTAGGCCACGTCACCGCGA
CGACCTACACGGAGGCGACATCACGTACGGCGGGCGACTCCAACAACGTCCGCGCCGGCCAGATCCCGGGTGAAGACAGG
GAA-AATGGTCGGCGATCGGCGGGGAAAGGCGGCGATCGGCCGGACGGGAAGACATTGGAATTGGCAGCGTGATCACGGC
TAGATCGACGGGGAAAGGCGGCGATCGGCGGGTAAGGGCGGCGATAGGCGGGGCGGGGCGACGTTGGAACGGGCCGCGTG
ATCAACGCAGGTCGTGG--TTTTTTT-T--CGCACGATGGGGAGAGGGTAGATGCGAGCCGGCCGTATCGGCTCGAGCCG
TGCGCTCGGCTGTACCTGTATGGGCACGCCGCATA---------------------------------------------
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>chr1A_1
TTTACAGATAC-AATTTTTTTGACAAACTAGACGACTTACGTGGCGTGCACGTGCACTTCGGCCGGCCTGGCCTGGCTGC
GGACGGCGAGGACGTTCCCGGAGAGGTTGATCACGGAGTTGCGGGCGGCGACGACGTCCACGTAGGCCACGTCACCGCGA
CGACCTGCACGGAGGCGACATCACGTACGGCGGGCGACTCCAACAATGTCCGCGTCGGCCAGATCCCGGGTGAAGAC-GG
GAA-AATGGTCGGCGATTGGCGGGGAAAGGCGGCGATCGGCCGGACGGGAAGACGTTGGAATTGGCAGCGTGATCACAGC
TAGATCGGCGGGGAAAGGCGGCGATCGGCGGGTAAGGGCGGCGATCGGCGGGACGGGGTGACGTTGGAACGGGCCGCGTG
ATCAACGCAGGTCGTGG--TTTTTTT-TT-CGCACGACGAGGAGAGGGTAGATGCGAGCCGGCCGTATCGGCTCGAGCCG
TGCGCTCGGCTCTACCTGTATGGGCACGCCGCATA---------------------------------------------
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>chr3A_1
TTTAAAGATAC-AATTTTTTTGACAAACTAGTCGGCTTACATGGCATGCACGTGCACTTCGGCCGGCCTGGCGTGGCTGC
GGACGGCGAGGACGTTCCCGGAGAGGTTGATCACGGAGTTGCGGGCGGCGACGGCGTCCACGTAGGCCACGTCACCGCGA
CAACCTGCACGGAGGCGACATCACGTACGGCGGGCGACTCCAACAACGTCCGCGCCGGCCAGATCCCGGGTGAAGAC-AG
GAAGAATGGTCGGCGATCGGCGGGGAAAGGCGGCGATCGGCCGGACGGGAAGACGTTGGAATTGGCAGCATGATCACGGC
TAGATCGGCGGGGAAAGGCGGCGATCGGCGGGTAAGGGCGGCGATCGGCGGGGCGGGGTGACGTTGGAATGGGCCGCGTG
ATCAATGCAGGTCGTGG--GTTTTTT-TTTCGCGCGACAGGGAGAGGGTAGATGCGAGCCGGCCGTATGGGCTCGAGCCG
TGCGCTCGGCTCTACCTGTATGGGCACGCCGCATA---------------------------------------------
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>chr7D_820
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----------------------CGATGGTTCCATCCGATTTACTTACATAGTGCATTTGGTTGGTAAGAGCCACACACGT
CAGGACAGAGACTCCCCACTGAAAACATGTACAAGCAGTTGGGTGCGTTTGGGATAAACAGAGCAACCACCGCGGGTGAA
CAAGCAGGATAGCTCAACCTCTCACAGGAGCCTGATCCAGAGCATGGCCGCTGCTTGGTGCCCCTCTTTCCCTACTCTCT
GCGTGGTGGTAGTAATAGTAGTGGTACTCATCGGCGGCGGTGGCGCTGCGTCTGCGGCGGACGAAGAAGGCCTC---ATC
CACCTTCACTTCTACTTCCATGAGGTCAACGCCGGCACGCCCAACGCCACCGTCCTCAACGTCGCCAGCCTGCACAAGTA
AGCATCCAA-----AGCTTTGTATGCATCTGCTGGCGCATAT-------CACATGTATATTCACGTGGAATAATATGGCG
CAGGAACTCGTCGACGTTCGGGGACCTGAACGTGTTCGACAACGCGCTGCGGGCGGGGCCGGACCGGGCATCGCGGCTCG
TGGGCAGGGCGCAGGGCCTGGCGCTCCACGCGTCGCTGGACGAGTCCGGCGGGCTCACGGCCATCACCTTCTTCTTCTCC
GACTACGGCGCGTACAGCGGCAGCACGCTGGCGACGCTGGGCCACATCGGGGTGTCTGGCCCGGCGGAGCGGAGCATCGT
CGGCGGCACGGGCAAGCTTCGGTTCGCGCGCGGGTACATGGTCAGCAGCCTCCTCAACTCCACGGACACCTCCATCGTGG
TCGTCTTCGACATGTATTTCACCCTGGCTCGCTGACTCGCACGCGCGCGGAACGAGCGTAGTACAAGGGTGTACATTTCG
AAGCAAAGCTGTTAGGGAGTTGCTGTCAT---------------------------------------------------
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>chr7B_998
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----------------------------------------AGCATGGCCGCTGCTCGGTGCTCCTCGTTCCCTGCTCTCT
GC---GTGGTGGTAGTAGTAGTGGTACTCATCGGCGGCTGTGGCGCTGCGTCCGGCGCGGACGAAGAAGGGCTC---ATC
CACCTTCACTTCTACTTCCATGAGGTCAACGCCGGCACGCCCAACGCCACCGTCCTCAACGTCGCCAGCCTGCACAAGTA
ATTAAGCATCTAGTAGCTCTGTATGCATCGGCCGGCGTATAT-------CACAAATATATTCACGTGAATTGATTTGGCG
CAGGAACTCGTCCACGTTCGGGGACCTGAACGTGTTCGACAACGCGCTGCGGGCGGGGCCGGACCCGGCGTCGCGGTTGG
TCGGCAGAGCGCAGGGCCTGGCGCTCCACGCGTCGCTGGACGAGTCCGGCGGGCTCACGGCCATCACCTTCGCCTTCTCC
GACTACGGCGCGTACAGCGGCAGCACGCTGGCGACGCTGGGCCACATCGGGGTGTCTGGCCCGGCGGAGCGGAGCATCGT
CGGCGGCACGGGCAAGCTCCGGTTCGCGAGAGGGTACATGGTCAGCAGCCTCCTCAGCTCCACGAACACCTCCATCGTCG
TCGTCTTTGACATGTACTTCACCCTGGGTCGCTGATTCGCACGCGCGCGGAGCGAGTGGAGTACAAGG-TGTACATTTCG
AAGCAAAGCTGTTGGGGAGTTGCTGTCAT---------------------------------------------------
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>SNPs
----------------------------------------------------------------------S---------
------------------S--------------------------------S------------S---------------
-------------------------------------------------S------------------------------
--------------S-----------------------------------------------------------------
-----------------------------------------------------------------S--------------
----------------------------------------S---------------------------------------
-----------------------S-----------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSS--S---------------S----S----S--------------------S--------
--------S----------S----------S--------------------S----------------------------
-SS--------------S--------------------------------------------------------------
-------------------------------------S--------S-S-------------S-----------SSS---
----------------------------------------------------------------------------S---
-------------------S----------------------SSSSSSS-------------------------------
------------------------------------------------------------------S-------------
-S---------------S----------S--------S------------------------------------------
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S-------------------------------------------------------------------------------
----------------------------S-------S----------S-----S-S------------------S--SSS
-SS----------S-S-------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_504
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----CTCGGCTCTACCTGTATGGC--------------------------------------------------------
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>reverse_1818
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---------------------------------------------------------TTGGTTTGGTCAGTGGTGCT---
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