>input_sequence_73644
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----------------------------------------------------------------------ATGTGGCTCG
GAAGGCCATGGATCCAGGGGTTGCAAGAGGCCGCGCGGCCCGTCCTCGGAGGTGGAGCTCCGGCGGCTTGCCATCGCCAT
GGTCG-CCGTAGGCAGGCGGGTGGCCAGCGTTGCGAGGGCAGTGCCCT---ACCGCCACCGCCCCCCTCTACGGCGGTGA
C-----C-GCGCCTGCAAACCCATGGCCTCACCTTGCCACCCCGTGCCCTTTGCCTCCGGCTTCGAGGCTGGCGCTACCG
TTGGACACGGCCATGGACCCGGCTGACCTGTGCGTGGTGCGGTGGAGTCAGGCCATGGAGGATCTGGAGAGGCGGCTTCA
GCAGGCTATGGTGGTGTACGCAGCAGGCGCTCGCCGGGACCTCCCGCCGGAGTTCATCCTCGAGGCACTCACCGTCAAGG
CGGGGATTGCATCAGAGTTCGTCTCCATCCATCACTACAGGCCGGAGGACTACCTCATCGTCTTCGCGTGCCGTGATCAC
AGGAACAGAGTGAGCGAGATGCCAGTGTTCGAGCATCGTGGAGTTCGGCTCTTCTTCAGGCCCTGGAACCGCCAATCCCA
AGCTGTGCATGCCGCATTCCAGTTCAGGGTCAAGCTAGTGCTTGAGGGAATCC--CTCCCCACGCCTAG-----------
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>chr6D_1_TraesCS6D01G128700
TGGAAGCATTCGTATGCAACCAACCCATTGTTTGTAATTAGACTCCCAGGAACAAAAGCACTTTGAGTCGGACTAATAAT
ATCAGGTAAGAAGACCTTTAGGTGAGAAGCTACCATTTTTGCTATTATTTTGTACACCACATTGCATAAACTAATCAGCC
TAAATTGGGTTACCCTTTCCAGAGAATTGACTTTCGGGATCACCACAATCGCAGTGTCATTACACCCTGATGGAATAGTA
CATGTATTCACTAGTTGCAGAACCTCCTCGATTAGATCGTCTCCTAACATCGGCCAAAACCTTTTATAGAAAACAGCATG
CAGCCCATCCGGCCCATCGTCTCCTCCCAACCACGGATAAAACCTTCTGATTAGGTTGCTCAACTCTGGCATCGCAAGTC
AAAGTCTCATTTGGGATAATATCAAACTCTCGCATCGCGGCGAAAGAGCAAGAGCGAGAGCCCGCGTCCCTAGA----GC
CTTGCCCGCTGTGCGCCACTCCGGCCCCGGCGTCCACCCACTCCCGTCGTCGGCCGCTCCGGCGATGTCGTCCCT-----
----------CCCCCCCCTCTGCTCCCGCTCTCCCTCGCTCCGGTCCCATGGCCTCGAGTACGAACTCGGTGGCTGGACC
CTCCCGTCGCGCTGGTGACCGGTCTGTGGTCTCCGGGTTGGGGATCTCGTCCTGCTCGGAGTCGTCCGACGCGGTGGCTG
GCCTGGAGGTCTCGTCAGGTGCGCGCTGGCCGGAGGGCGACCCCGCTGCTGCGGTGCTTCCTATGGGCGAGGCGCTGGCC
GCAGGCTGCC----------GCCGGCTTGGGCTCCGGTTCCCCCCTCCAAGAAGCCGCTTTGGAGGCGGCGCCTGGACCG
CCAGCCGCGGGATCCGCGTGCGCGCCTTCCCCCTCCGACTCTCTC-CCCCCGCGGCGTGAGGCTTCGCCGGACATGGAGG
GACTCTGCGTCAGGTGTCTCCGGGAGGGCCACTTCCAGCGCGACTGCGCCAATGACACCGTCTGCATCAGATGTGGCTCG
GAAGGCCATGGATCCAGGGGTTGCAAGAGGCCGCGCGGCCCGTCCTCGGAGGTGGAGCTCCGGCGGCTTGCCATCGCCAT
GGTCG-CCGTAGGCAGGCGGGTGGCCAGCGTTGCGAGGGCAGTGCCCT---ACCGCCACCGCCCCCCTCTACGGCGGTGA
C-----C-GCGCCTGCAAACCCATGGCCTCACCTTGCCACCCCGTGCCCTTTGCCTCCGGCTTCGAGGCTGGCGCTACCG
TTGGACACGGCCATGGACCCGGCTGACCTGTGCGTGGTGCGGTGGAGTCAGGCCATGGAGGATCTGGAGAGGCGGCTTCA
GCAGGCTATGGTGGTGTACGCAGCAGGCGCTCGCCGGGACCTCCCGCCGGAGTTCATCCTCGAGGCACTCACCGTCAAGG
CGGGGATTGCATCAGAGTTCGTCTCCATCCATCACTACAGGCCGGAGGACTACCTCATCGTCTTCGCGTGCCGTGATCAC
AGGAACAGAGTGAGCGAGATGCCAGTGTTCGAGCATCGTGGAGTTCGGCTCTTCTTCAGGCCCTGGAACCGCCAATCCCA
AGCTGTGCATGCCGCATTCCAGTTCAGGGTCAAGCTAGTGCTTGAGGGAATCC--CTCCCCACGCCTAGGAGCGGAGCAT
TATGGAGAGTCTGTTGGGTTCATCTTGCTTGGTGGATGCGCTGGAGATGGAGACCAGTTCAAGGGCAGACATTTCAACGT
TCAAGCTCTCGGCCTGGACTGCACAGCCAGCGGACATCCCGTCTCTTCGTTGGTTGGCGATTCCGGAGCTAGGTTTGTAG
TCACCATTGATGGAGCCATCGCTGCTGCAGTATAAGGTGCTCATTCACCTGGATGAGGTTCGTGATTACAGAGGTGTGGA
CGAGCCATTGTTCTTGAGGGAGTCCTCGGACAGCGGGGAGAGTGGCTTGCCCGAGCGCGACGATGACATGGACAGAGGCG
GTGGCAACATTGCTCTCTCCAGACCGGGCTGGCAATTTGGTGTTCGCGATGCATGCGGCGCGCCGGTTGGGCATCGTCGG
GGCGCCCTCGCCGCCGGTGGGGAGCCCAGGTCCGCTGGTGCGGTGGCCTCGGACGAACAGGATTGGCGCCTTCCCTGCAT
GCAGATGGCGACAGCGGTGGCCCCAGGCTCACGTCGTGGATCAATTCGGGATAGGATCGTGACAAGACCATCAGCTTTTG
ACCGCCTGACCTTCCAGATGGCGAGTCAAGACAGGCCGGAGAATCCTGAGGCGCCCCCCGCCGTGGGGTCGACACATTTG
GAGGTTGAGCATGCTGGTGTGATTCAAAATGAGGAGGCGGGGCAGCTGTCGAGCCAGGACAGGGCTGTGAATCCTGAGGC
TTCCCCTACGATGGGCTGACTCGATTGGAGTGCGAGCACGTTGGTGCGGTCCAAAAGGAATTGGTCGGGCAGCTGGTTTG
CCAATGGCCTGATCCGGTGGTGCCGGGCCCAGATAGGTTAGAGACAGGCGTGGTTCAGGTTGCTCCGGGCCCACGTGAGG
TATATAGGTCGGGGTTGATGGAGACAAAAGACAAGGTGCTAGACCAGGATACAAGGCGATTGGAGAGGGAGAGGGAGACA
GAGACGTTGGCCCCACTGGGATCGACCCC
>chr4A_443
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------------------------------------------AAAGAGGAAGAGCGAGAGCGAGTCCGCAACCCCTCCGC
CCTGCCCGCCGTGCGTCACTCCATTGCCGGTGTCCACCCTCTCCCGGCGTCGGCCGCTCCGGCGACGTCGTCCACCCTCT
CCATTCCTTTCCTCCCCTTCC-CTCTCGCTCCCCCTTGCGCTGGCCCCATGACCTCGAGCCGGAACTCGGTGGCTGGCCC
CTCCCGTCGTGCTGGTGACCGGCCGGTGGTTTCCGGGCTAGGGATCTCGTCCTGCTCGGAGTCGTCCGGTGCGGCGGGCA
GTCTAGAGGTCTCGTCGGGTGCGCGCAGGACGGAGGGCGACCCTGCTGCTGGGGGCCTGCCAGTGGGCGAGGAGCCGGCA
GTGGGTAGT--CCGCCTTGGGCAGGCCTGGGCTCCGGTTCCCCCATCCAAGAAGACGCTCTGGCGGCGGCGCCTCGACCG
TGCGCCGCGGGACCCGAGAGTGCACCTTCCCTCGACGTCCCTCTTTCCCCCGCGGCGTGAGGTTTCGCCGGACATGGAGG
GGCTCTGCTTCAGGTGTCTCCGGGAGGGGCACTTCCGTCGTGACTGCACCAACAACATCGTCTGCATCCGTTGTGGTCTG
GAGGGCCATGGTTCCAGGGGCTGCAAGAGGCCTCGCAGCCCATCGTCGGAGGTTGAGCTCAGGCGGCTCGCCATCGCCAT
GGTCGCCCGTAGGCTGGCTGGCGGCCAGCGCCATGACGGAAGTGCCCT---GCCGTCGCCACCACCGCCTCCCCCCGCAC
TGGCGGCTGTGCCTGCTAACCTGTGGCCCCGCCTTGCCGCCCCGCGGCCCTTGCCCCCGGATCCGCGGCTGGCTTTGCTG
CTGGACACGGCCATGGACCTGGCTGATCTGTGTGTGGTGCAGCGGGGTCATGCCATGGAGGACCTAGAGCAGCGGCTTCA
GCAGGCTATGGTGGTGTACGTCGCTGGCGCTCGCCACGACCTCCCGCCGGAGTTCTTCCTCGAGGCGCTCTCTGTCAAGG
TGAGCATTGAGTCCGAGTTCGTTTCCATCCACCATTACAGGCCAGAGGATTACCTCATCGTCTTTGCGCGCCGGGATCAC
AGGAACAGAGTGAGTGAGATGCCTCAGTTCGAGCATCGTGGAGTCCGGCTCTTCTTCCGGCCTTGGAACCGCCAAGCCCA
GGCCGTGCATGCCACATTTCAATTCATGGTCAAGCTGGTGCTGGAGGGAATCC--CTCCCCATGCCTGGGAACGGAACAT
CATGGAGAGCCTGCTGGGATCTTCTTGCCTGGTGGACGTGCTGGAGCCGGAGACCAGTTCAAGATCAAACCTTTCTGCGT
TCAAGCTCTCGGCCTGGACTGCGCAGCCAGCAGACATCCCGTATATCCGTTGGTTGGCGATTCCAGAGCCGGGGCTACAG
TCGCCATTGATGGAGCCTTCTCTGCTACAATACAAGATACTCATTCACCTGGACGAGGTTCGTGATTACAAAGGTGTGGA
TGAGCCACTGTTCTTGGGTGAGTCCTCGGACAGCGGCCAGGGCGGCGTCCCGGAGCGTGATGACGACATGGACATAGGTG
GTGGCAGCATATCCATCTCTAGGCCGGCTTGGCAGTTTGGGGTTCGAGATGTGCGCGGCACGCCTGGGGGGCGCCACCGG
GGCGCCCTCGTCGCCGGCGCGGAGCCCAGGGACGTTGGGGAGATGGGCCAGACTGCTCTGGATTGGCGCCTTCCCTCCAT
GTAGACGGCAACAACGGTGGCCCCGGGAGCGCGGCGTGGATCAGTTCGGGAGAGGATCGTGACAAGACCATCTGCTTTTG
ACCGACTGACTTTCCAAGTGGCAAACAACGATAAGCTGGAGAACCCCGAGGCGCCCTCGCGGCAGAGC-CGACACGGTTG
GTGGCTGGGTAGACTGGTGCGATTCTAACAGTGGAGATTGGACAACATTCGAGTCCGGAAAGGGCAGGGAATCCCGAGGC
ACCCCACTTGATGGG-----------------------------------------------------------------
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>chr7D_543
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------------------------------------------------------------------GTCGTCCAC-----
----------CCTCCCCTTCC-CTCTCGCTTCCCCTTGCGCCGGCCCCATGGCCTCGAGTCCGAACTCGATGGCTGGCCC
CTCCCGTCGTGCTGGTGACCGGCCGG----------GTTGGGGATCTCGTCCTGCTCGGAGTCGTCCGGGGCGGCGGGCG
GTCTGGAGGTTTTGTCGGGTGCGCGCAGGATGGAGGGCGTCCCCGCTGCTGCGGGCCTACCGGTGGGCGAGGCGCCGGCC
GCGGGCTGCCGCCGCCTTGGGCAGGCTTGGGCTCCGGTTCCCCCCTCCAAGAAGACGCTCTGGCGGCGGCGCCTTGACCG
TGAGCCGCGGGATCCGAGAGCACGCCTTCCCCCACCGTCCCTATCTCCCATGCGGCGTGAGGTTTCGCCGGACATGGAGG
GGCTCTGCTTCAGGTGTCTCCGGGAGGGGCACTTCCAACGCGACTGCACCAATGACATCGTCTGCATCAGATGTGGTCTG
GAGGGCCATGGTTCCAGGGGCTGCAAGAGGCCTCGCAGCCCGTCTTCGGAGGTGGAACTCCGGCGGCTCGCCATCGCCAT
GGTCGCCTGCAGGCTGGCGGGTGGCCAGCCTCGCGAAGACAGTGCTCTGCCGCCGCCGCCGCCTCCGCCACCCCCCGCGC
CGGTGGC-GCGCCTGCTAACCCGTGGCCGCGCCTCGCCGTCCCGCGGCCCCTGCCAACTGCTCCGCGGTTGGCTTTGTTG
CTGGACACGGCCATGGACCTGGCTGATCTATGCGTGGTGCGGCGAAGTCATGCCATGGAGGATCTGGAGCGGCGGCTTCA
CCAGGCTATGGTGGTGTACGCTGCTGGCGCTCGCCGCGACCTCCCACCGGAGTTCTTCCTCGAGGTGCTCTCCGTCAAGG
AGGGCATTTCGTCCGAGTTCGTCTCCATCCACCATTACAGGCCGAAGTATTACATCATCGTCTTCACGCGCCGGGAGCAC
AGGAACAGAGTGAGCGAGATGCCGGTGTTCGAGCATCGTGGAGTCCGGCTCTTCTTCAGGCCCTGGAACCGCCAATCCCA
AGCCGTGCACGCCGCATTCCAGTTCAGGGTCAAGTTGGTGCTCGAGGGAATCCGTC--CCCATGCCTGGGAGCGGAACAT
CGTGGAGAGTATGCTGGGTTCTTCTTGCCTGGTGGATGCGCTGGAGCCGGAGACCAGTTCAAGATCTGACCTTTCGGCGT
TCAAGCTCTCGGCCTGGACTGCGCAGCCAGCAGACATCCCGTCTATCCGTTGGCTGGCGATTCCAGAGCCGGGGTTGCAG
TCACCATGGACGGAGCCTTCATTGCTGCAGTACAAGGTTCTCATACACTTGGATGAGGTTCGTGATTACAGAGGTGTGGA
TGAGCCACTGTTCTTGAGAGAGTCCTCGGACAGCGGCCAGAGCGGCGTCCCTGAGCATGATGATGACATGGACAGAGGCG
GTGGCAGCATAGCCCTCTCCAGGCCGGCTTGGCAGTTTGGTGT-------------------------------------
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>chr2A_1207
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----------------------------------------------CCCTTTGCCACAGGCTCCGAGGCTGGCACCGTCA
CATGACAGGGCTATGGATCCGGCGGACTTGTGCGTGGTGCGGTGGAGTCTGGCCATGGAGGATCTGGAGAGACGCCTTCA
ATAGGCTATGGTGGTGTACACGTCTGGCGCTCGCCGGGACCTTCCGCCGGAGTTCATCCTTGAGGCGCTCTCTGTTAAGG
CGGGGATTGCATGGGAGTCCGTCTCCATCCACCATTACAGGCCGGAGGACTACCTCATCATCTTCGCGTGCCGAGATCAC
AGGAACAGAGTGAGCAAGATGTCAGCGTTCGAGCACCGTGGAGTTCGGCTCTTCTTCAGGCCCTGGAACCGCCAATCCCA
AGCTGTGCATGCTGCGTTTCAGTTCAAGGTCAAGCTGGTGCTCGAGGGAATCC--C--CCCATGCATGGGAGCGGAACAT
CATGGAGAGTCTGCTGGGTTCATCATGTTTGGTGGACGCGTTGGAGCCGAAGACCAGTTCAAGGGTAGACATTTCGGCAT
TCAAGCTCTCGGCTTGGACTGTGCAGCCAGCGGACATCCCGTCTCTTCGTTGGTTGGCGATTTCGGAGCCGGGTTCGCAG
TTGCCATTGATGGAGCCATCGCTCTTGCAATATAAGGTGATCATACACATTGATGAGGTCTGGGATTACAGAGGTGTGGA
CGAGC-ATTATTCTTGAGGGTGTCCTCAGACATCGGGCAGAGTGGCTTGCCTGAGCGCGACGATGACATGGACAGAGGTG
GTGGCAGCATCGCTTTCTCCAGACCGGGTTGGCAATTTGGTGTTTGTGATGCGCGCGGTGCGTCGGCTGGGCATCGCCGG
GGCACCCTCGC-GCCAGTGCGGAGTCCAGGAACGCTGGTG----------------------------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------S------------SS-SSSS-SSSSS------
-S-------S-----S------SSSS----S--------S------S------------------S-------SS-----
------------S----S--SS---S-----S----S--S----S---------------S----------------S--
---------S------------S-S-----S-------------------------------------SS----S--SS-
-S--------------S---------S--S------------------------SS--S--SS------------S----
--S-------------------S-------------------------------S----S---S----------S-----
SS--------------S-S--------------S---S-S----------------------S-----------------
-S------S-------------------S--------S---------S---------S------------------SSS-
--S--------S--------S-----------S---S-------S-----------------------S-----------
--------------S----------------S----S--------------S-----S-----S--SS--S-SS-S-S-S
----------------S-----S-----S-S-------S-----S----------S------S----------S--S---
S-------------------------------------------------------------------------------
---------------------S--S-----------------------------------------S---S---------
-------------S-----------------S--S--------------------------------------S------
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------------------------------------S-----S-------------------S----S--------S---
S------------S--------------------------------SS---------------------------SS---
----------------------S----------------------------------------------SS------S--
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-------------------------------------S-------------S----------------------------
------S---S-----------------S-----------------S-----SS------------S---------S---
-------------------S----------SS--------S-S---S-SS-SSS-SS-S-----------------S---
-S---S---S---S----------S--SS-S--S---------S-------S--------------------S-------
----S-----S-----SS----S-SSS-S--S-S--S------S--S---------S-SSSSSS-S-SS------SS---
-S--S--S-S-SS------S-----S--SS-S----SSS--S--S-SS-----S-S---S-----S-S------S-----
SS---SSSS------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_399
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-----------------------------------------------------------TCAACTCTGGCATCGCAAGT-
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>reverse_2304
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---------------------------------------------------------------TGGGGTCGACACATTTG
GAG-----------------------------------------------------------------------------
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