>input_sequence_73641
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------------------------------------------------------------------------------AT
GTCGATGGCGGCAGCAGCGAAGTCGTCGTATTTGCTGGACGTGAAGCCATGGGGCGACGAAACCGACATGGGCAAGCTGG
AGGAAGCCGTACGAAACGTCAACATGGAAGGCTTGACCTGGGGTGCCTGTACGTTGATTTCTCTGACTG-----ATACGA
TCTCTTCCTAGAAACAACAACAGCTCTGAGTTAGGCGTCTTAAATATTTCAGCACCATATATCCATTTACTTATCTATGT
ACTGTATATGCCAATTTTGATTGATCGGGTTCTAA---ATCGACTATCTCTCGACATGCAGCGAGGCTGGCCCCGGTCGA
ATACGGGGTGAAGAAGCTGCAGATAATGGTGACCCCCGTCGACGACCTCGTCTGCGTCCACGGCCTCATCGAAGACCACC
TCTGTGCTTCGCCGATAGACGAGTACGTCCAGAGCTGCGACGTGAGCTTCGACCCAATCTGTAAGCAATTTTCCTGCCTA
GCTGGTTTGATCAAGTGGAAGATTATCTCCCACGTATACGTTCCTGCTTTAGTTTGTCCACGCT----TTTGTTTGGAAC
TAATGTCTGCGTAAACTTGCA-TAGACGTTGCAGGAAATTTCTCGTCACGTGCTGCTGGCGATGGCGGAGAAGATTAG--
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>chr6B_1_TraesCS6B01G199300
ATATCATATAGTATCATGTACTCCCTTCGTCTCAAAATAAATGTCTTGAGCTTAGTACAAATTTATACTAGAGCTAGTAC
AAAGTTGAGACACTTATTTTAGGACGGAGGGAGTAGTATTTTATTATTGTCATATATGACATATAGTAACATAGCATTTG
TTATGATATGGTATCATGATATGATATTCAATTCTTTTTTTCTTCATTTAATTCTACGACACTTCATCAAAATTGCCTAG
TTGGCATGCATGATACTAGCTATAATATTCTCATTACGACCAGCCTAAATGATGCGACCGATGAATGTTGTTGTTGAATG
CTGATGTGAGAACGGTGAATGGTAATGTGCTCATATTCAATAAATGTTTTTTCAGGTGCATATTCAATAAATGTTAACAA
TTTATCAAACAGTTTTTGTCTAAGGATAGTTCAGACATTTTTTTTTGCGGGGGAAAACATTCATTAATCAAGTGGTAACA
GTTTTACAATCATATGTAATGATAGTGCTAATCTCATGTGGTACATTTGCTAGCCAACATGCTGTA--------------
-----------------CATGTCCAGCTTTGTTCTGCAATTGGCTAATCTTACGGACTTCAGTTTGTCGCTCCTTAAGCA
GGTCAGAGATATCTCTTACTTGATGCATGTTCCTGGAACGATCAGATTGCCCAGCCTTGAGCAGTGCGATGATCTCCGCA
CAGTCAGACATTTTAACACACAACTCAATTCACACTCTTAAACTAGAATCTCAGAAAAGAACTCGACAGCGGATTCCACG
GGAAGCAGATTCCAGGATAATTTTCCGGAATCTTGACCTTCAAGCCACCACGCACGTACGTACGGTGGATCTTGTACGTG
GATTCGAGTTCGAGACGTACACGGATCGACGGGGCGCCCCTCCACCACCGCCTACTTAATGCGCCTAATCTAG-TCTGGT
CACGCTCCAATCCGGTTAGTCGCCTCGCTCCCCCT-GAACCACCCTCGACCAA-----AACTCTCGGCAGCCGAATTGAT
GTCGATGGCGGCAGCAGCGAAGTCGTCGTATTTGCTGGACGTGAAGCCATGGGGCGACGAAACCGACATGGGCAAGCTGG
AGGAAGCCGTACGAAACGTCAACATGGAAGGCTTGACCTGGGGTGCCTGTACGTTGATTTCTCTGACTG-----ATACGA
TCTCTTCCTAGAAACAACAACAGCTCTGAGTTAGGCGTCTTAAATATTTCAGCACCATATATCCATTTACTTATCTATGT
ACTGTATATGCCAATTTTGATTGATCGGGTTCTAA---ATCGACTATCTCTCGACATGCAGCGAGGCTGGCCCCGGTCGA
ATACGGGGTGAAGAAGCTGCAGATAATGGTGACCCCCGTCGACGACCTCGTCTGCGTCCACGGCCTCATCGAAGACCACC
TCTGTGCTTCGCCGATAGACGAGTACGTCCAGAGCTGCGACGTGAGCTTCGACCCAATCTGTAAGCAATTTTCCTGCCTA
GCTGGTTTGATCAAGTGGAAGATTATCTCCCACGTATACGTTCCTGCTTTAGTTTGTCCACGCT----TTTGTTTGGAAC
TAATGTCTGCGTAAACTTGCA-TAGACGTTGCAGGAAATTTCTCGTCACGTGCTGCTGGCGATGGCGGAGAAGATTAGTA
T------CTAGTTGGGTTTTCTTCAGGGACCCTGGTTAGTTTTTCTTAGTTTTGTGGTTACCGGGTACTTAAAGAGTC--
--TTGACTCGTTGCAATACATTGGAAGCAGTCATGAGTTTT----------------ATTGCTGGAGAATGTAACTGAAG
CGTGATC---GCTCTGGTTTGCCCATGCCAAGATTTGCAACACTTCA---CTTTATTGCCGTTGAATATGGGAGTCCTTT
AGACATATGTTACTAGTCCATGTTACTACCTCTATAGTAAAAAATAACATATGTGTGGTAACGTGTAATATCTTATTTAT
TAGGCTATAGACTCATTTTGTTTTGACATGTGTGATGTTACTCATACTACTAGTAACTAGCTATGTTGCCACTTTCCTAT
TTTGCTTCATTTATTGTTTGCCACATCATCTATTTTATCTAGATATGTCTGATGTTACTATCTATGTTACTTTCATTATG
GGTAGTCTCAGAGCCGTCTATGATTTAGTTCAGTACAATAAATAAATTTATTATCCAATCTTTGGGACAACTTCATTTTT
CAGAAAAGGGAAGCTTTTATCAACTCATAATGAAGCATCAAGAGAAAACAAAACACTATGAGAGGCATCGAATAGTTAGA
GTGCACATAACTAACACCAACGCGCGCGCACAGAACTCGCATAGAAGACAAACTATGCCTAGGGAGATGAAAAATAAAAT
GTAAAGAAAAAAAAGATCAGCACCGATCCTTGTCGAGCAATTGCAGCCACTTCAATTCGAATAATATGTTGCCTAAGTGC
AATGACCTATATTTATTCAATGCACATCATGTACATATAGGAGGTGATCTCACAAAATTCCTATGAAAGATATCACAAAC
CAAACACATGAACGAAACCATCAAATCCCACTTTTCGACTCAGAACCAAACACAAAAATGAAATTGCTTGAATGGAACCA
TGACATACCATTGCATTTAGTTCCCAAACCAAGCACACCCTAGACTTCTTAAGTTGAAACTTGTTTGTTT
>chr6A_116
--------------------------------------------------------------------------------
-----------------------------------GTACTTCATTATTGTCATACATGAAATATAGTAGCATAGCATTTA
TTATGATATGGTATCATGATATGATACTCAACTCTTTTTTTCTTCATTTAATTCTATGACACTTCATCAAAACTGCCTAG
TTGGCATGCAGGATACTAGCTATGATACTCCCATTACGACCAGCCTAAATGATGTGACCGATGAATGTTG----------
---ATGTGAGAATGGTGAAAGGTAATGTGCTCATATTCAATAAAAAAATT---AGGTGCATATTCAATAAATGTTAACAA
TTCATCAAACAGTTTTTGTCTAAGGATAATTCAGAC---TTTTTTTGCGGGGGAAAACATTCATTAATCAAGTGGTAACA
GTTTTACAATCATCTATAATGATAGTGCTAATCTCCGATGGTACATTTGCTAGACAACACGCTTTGCGATGCTGTACAAG
TCCTATCGCAGCCACGGCATGTCCAGCTTTGTTCTGCAATTGGCTACTCTTACGGACTTCAGTTTTTCGCTCCTTAAGCA
GGTCAGAGATATCTCTTA-TTGATGCATGTTCCCGGAACAATCAGATTCCCCAGCCTTGAGCAGTGCGATGATCTCCGCA
CATTCAGAAATTTTAACACACAACTCAATTCACAATCTTAAACTAGAAT-------------------------------
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>chr6A_734
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--------------------------------------------AGAATCTCAGAAAAGAACTCGACGACAGATTCCAGG
GGAAGCAGATTCCAGAAGAATTTTCCAGAATCTT--CCTTCAACCCACCACGCACGTACGTACGGTGGATCTTGTGCGTG
GATTCGAGTTGGAGACCTACACGGATCGACGGGGCGCCCCTCCAGCGCCGCGTACTTAATGCGCCTAAT-TAG-TCTGGT
CACGCCCCAATCCGGTTAGTCGCCTCGCGCCCCCTGAAACCGCGCTCGACCAAATTAAAACTCTCGGCAGCCGAATTGAT
CTCGATGGCGGCAGCAGCAAAGTCGTCGTTTTTGCTGGACGTGAAGCCATGGGGCGATGAAACCGACATGGGCAAGCTGG
AGGAAGCCGTACGAAGCGTCAACATGGAAGGCTTGACCTGGGGTGCCTGTATGTTGATTTCTTTCTCAAAATATATACGA
TCTCTTCCTCCAAACAACAATAGCTCTGAATTAGGCGTCTTACA---TTCAGTACCATATATTTACTTATCTAT--ATGT
ACTGTATATGCCGATTT-GATTGATCGGGTTCTAA--AATCGACCATCTATCGACATGCAGCCAGGCTGGCCCCGGTCGA
ATACGGGGTGAAGAAGCTGCAGATAGTGGTGACCCTCGTCAACGACCTCGTCTCCGTCGACGGCCTCATCGAGGACCACC
TCTGTGTTGCGCCGATGGACGAGTACGTCCAGAGCTGCGACGTGGGCATCAACCAAATCTGTAAGCAATC-TCCTGCCTA
GCTGGTTTGATCAAGTGGAAGATTATCTCCCACGTCTATGTTCCCGCTTTCATTTGACTCGACGACGCTTTGCTTGGAAC
TAATGTCTGCGTAAACTTGCCCTAGACGTTGCAGGGAATTTCTCGTCGCATGCTGCTGCCGATGGCGGAGAAGATTAGTA
ATATGCCCTAGTTAGGTTTTCTTTAGGGGCCCTAGTTAGTTTTT----------TGATTACCAGGTACTTA-AGAGTCTT
GATTGACTCGTTGCAATACATTGGAAGCAGTCATGATTTTCAACATTGGAAGCAGTCATTGCTGGAGAATGTAACTGAAG
CATGATAGTAGCTCTGGTTTGCCCATGCGAAGATTTACAACACTTCATAACTTTATTGTCGTTGAACATGGGAATCCTTA
AGA-----------------------------------------------------------------------------
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>chr6D_761
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-----------------------------------------------------------------------GATTCCGCA
CGAAGCAGATTCTGGGAGAATTTTCTGAAATCTTGACCTTCAACCCACCACGCACGTACGAA-GGTGGATCTT----GTG
GATTCGAGTTGGAGACCTACACGGATCGACGGGGCGCCCCTCTACCACCGCCTACTTAATGCGCCTAGTCTTAATCTGGT
CACGCTCCA------------GCCTCGCCCCCGCC-AAACCGCCCTCGACCAA-----AACTCTCGGCAGCCGAATTGAT
GTCGATGGCGGCAGCAGCGAAGTCGTCGTTTTTGCTGGACGTGAAGCCATGGGGCGATGAAACCGACATGGACAAGCTGG
AGGAAGCCGTACGAAACGTCAACATGGAAGGCTTGACCTGGGGTGCCT------TGATTTCTCTAATTA---ATATACGA
TCTCTTCCTCGAAACAATAATAGCTCTGAATTAGGCGTCTTAAATATTTCAGCACCATATATCCATTTACTTATCTATGT
ACTGTATATGCCAATTT-GATTGATCGGGTTCTAATAAATCGACTATCTATCGACATGCAGCCAGGCTGGCCCCGGTCGA
ATACGGGGTGAAGAAGCTGCAGATAATGGTGACCGTCGTCAACGACCTCGTCTCCGTCCACGGCCTCATCGAGGACCACC
TCTGTGCTGCTCCGATGGACGAGTACGTCCAGAGCTGCGACGTGAGCTTCAACCCGATCTGTAAGCAATTTTCCTGCCTA
GCTGGTT-----------------------------------CCTGCTTTAGTTTGTCCACGCT----TTTGTTTGGAAC
TAATGTCTGCCTAAACTTG-CCTAGACGTTGCAGGAAATTTCTCGTCGCATGCTGCTGGCGGTGGCGGAGAAGATTAGTA
TGCCCTA-------------------------------------------------GTTACCCGGTACTTG-AGAGTC--
--TTGACTCGTTGCAATACATTGGAAGCAGTCATGATTTTT----------------ATTGCAGGAGAATGTAAGTGAAG
CATGATC---GCTCTGGTTTGCCCATGCCAAGATTTACAACACTTCT---CTTTATTGTCGTTGAACATGGGAGTCCTTC
AGA-----------------------------------------------------------------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---S--S------------S----S--------S----------S
--------------------------S----S------------------------S---------------S-------
----------S------------S---S--S-----------------------S---------------SSSSSSSSSS
SSS---------S------S------------------------SSSS--SSS---------------------------
--S-------------------------S-------SSS-----------------------------------------
-------------S-S-------------------SSS---------------S-----S---S-S--------------
----------------------------------------------S------------------S--------------
------------------S--------------S-----S--------S-------------------------------
--S-----S-------------------------S--------------------------------SS-S---------
-----------------S-------------------------S-------------------------------S----
----------S-----S---------------------------------------------------------------
----------------------------S-------S----S--------------------------------------
-----------------------------S---------------------------S----------------------
---------------------------------------------------S------------S---S-----------
---------S----------S--------S--------------------------------------------------
-----------------S-------------------------------S------------S-----------------
-----------------------------------S----S------------S------------------S-------
--------S-------S---------------------------------S-----------------------------
-----------------------------------S--S-----------------------------------------
--------------------S--------------------------S-S------------------------------
-------------S---------S----S----S----------SSSSSSSSSS--------S--------S--------
------------------------------------S-------------------------------------------
-S----------------------------------S---------------------S-------S------------S
---SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_729
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---------------------------------------------------------------------TGATCTCCGCA
CAGTCAGAC-----------------------------------------------------------------------
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>reverse_2158
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-----------------------------------------------------------------------------ATG
GGTAGTCTCAGAGCCGT---------------------------------------------------------------
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