>input_sequence_73620
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-------------------------------------------ATGGCAACAACATTGATATCCTCAATCATCTTCTCTG
CCAGTTTATTCGTGATCTTTTCCATGGCAATCACTGCTAAAGCAAACGACTCTGGCAGTGGAAGGGCCAAGGTGACCAAT
CTCATGCTAGAAGCATGCAAGAATGCATCAGGCTACAGTCGCGATTTCGAACTCCATGTCACACAGGAATTTTGCTTGTC
GACCCTGCAATCGAGCAATCGGAGTGTTGATGCTAGGGACCACCTTGACCTAGTGCTCATCGCCATTGATATCCTTAAAG
ACCGCCTCAATACTGCTAATCACAATGTTGAGAAAATGCTACAAAATGCAAAGAAAGGTACAGTGAAAATCCGTGACCTC
TATTTATGCAAGGTTTACTATGATACCACAACGAGAATCATCAACATATGTGATTCCATGTTCACGGACTATCGCGGAGA
CAAGGGCGAGCTACAGCCCTTTGAGCTTCTTCGTTGGGTTGATAGAGTGGGTTTCCCCATCGATGGGTGCATGTCCAATC
TGAGCATAGAGAAGCCAAGGGCAGATTCACTTATCAATGAAAATTTTGAGATGGCCATGCTGGTCAACCTTGGCTATGCC
TTGCTAGCACCCTATGATGATAGTTATTAA--------------------------------------------------
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>chr4A_1_TraesCS4A01G450800
GGAATAGGATT--GGGGGGGAAGTCCTACTCCCGGTAGGAGTAGGACTCCTCCTGCGCCTCTCTCTCTTGGCCGGCGCCC
CCTCCCCCCTTGGCTCCTTTATATACTGAGGTAGAGGCACCCCAAAGACACACAAGTTGACACAAGTTGATCCACGTGAT
CTATTCCTTAGCCGTGTGCGGTGCCCCCTGCCACCATATTCCTTGATAATACTGTAGCGGAGTTTAGGCGAAGCCCTGCT
GCTGTAGTTCATCAAGATCGTCACCACGCCGTCGTGCTGACGAAACTCTTCCCCGACACTTTGCTGGATCGGAGTCCGGG
GATCGTCATCGAGCTGAACGTGTGCTCGAACTCGGAGGTGCCGTAGTTTCGGTGCTTGATCGGTTGGATCGTGAAGACGT
ACGACTACTTCCTCTACGTCGTGTCATTGCTTCCGCAGTCGGTCTGCGTTGAGTACGTAGATAACACTC-TCCCCTCGTT
GCTATGCATCACATGATCCTGTGTGTGCGTAGGAAAATTTTTGAAATTACTACGAAACCCAACAAATATGAGGTTATAAA
AGATGTGCAACAACGTAACTATATGAATTTATTTGACAATAATCATTTGTCCATGATCATGTTGTTTGCATGAGTGGCTC
TATGGAATTACATGTATATAAATATGAGAAGATATAAAATGAAAATAAACTTATTTGTAAATACAGAGAGCATTAATACC
ACAAGATCCAAAGTGAGCATTAGTACCCTGATATCCAAATAGAGCATTATTACCATGGGATCCAAAATGGAGTTAATATT
CATAGATTGGACATGAATACACAAATGCATGATTATCAGTGACAGGAGATCCAAAACAAGCATATAACGTTTATGAAACC
CCACTAACATGTAGTATAAATAAATCCTGGCCGAATGTACATCACCTACATCCTTCTACATACATTTATCTCCACCTATC
TTGGCTTAAGTACAACTTGAAGGTTCTAGGTAGCCTTGCACCAATGGCAACAACATTGATATCCTCAATCATCTTCTCTG
CCAGTTTATTCGTGATCTTTTCCATGGCAATCACTGCTAAAGCAAACGACTCTGGCAGTGGAAGGGCCAAGGTGACCAAT
CTCATGCTAGAAGCATGCAAGAATGCATCAGGCTACAGTCGCGATTTCGAACTCCATGTCACACAGGAATTTTGCTTGTC
GACCCTGCAATCGAGCAATCGGAGTGTTGATGCTAGGGACCACCTTGACCTAGTGCTCATCGCCATTGATATCCTTAAAG
ACCGCCTCAATACTGCTAATCACAATGTTGAGAAAATGCTACAAAATGCAAAGAAAGGTACAGTGAAAATCCGTGACCTC
TATTTATGCAAGGTTTACTATGATACCACAACGAGAATCATCAACATATGTGATTCCATGTTCACGGACTATCGCGGAGA
CAAGGGCGAGCTACAGCCCTTTGAGCTTCTTCGTTGGGTTGATAGAGTGGGTTTCCCCATCGATGGGTGCATGTCCAATC
TGAGCATAGAGAAGCCAAGGGCAGATTCACTTATCAATGAAAATTTTGAGATGGCCATGCTGGTCAACCTTGGCTATGCC
TTGCTAGCACCCTATGATGATAGTTATTAATATAATGCTTTTTTTGTTTGCGATAAATGATGTTGTAGGTTTGTACCGAC
ATCAATTTCAGTTCCATTTTGAATAATAATAAAAGTGTCGTTGTCACATGTGTTTTACTCTCATTTTATTTTCTTATGTA
GCCACACACACTAACGCGTGCATACACACACCAAGTCAACCTCCCACCACCGGCTATCTACCTCCCTGTACCCCAACCTT
CTACCCCGTCTCCCACACGATCCCCAACCCACAAGCCGTAGACCACGACGGCCACCACCCAGCAGCGGCCACCGCACCCC
GGCGACATCCCACCACTGTCACGCCCCCACCCAGCGCCGGCCCGTCCCGGATCCGCTCCACCCGCCCCCGCTACCTTCCT
GCGGTGTCGCGACCGCCGGTGGAGATCGAGTGCTGCCTGCATCCGGGCGCGCGGTGGCCTCCCCGTGTGGTTCCCCGCGG
GCGCCTGCATCGGGATCCCTGCTAGCCATGGCGACCTCCCCGCCGTGCCCCGCCCTATGCTGCACCCACCCTTTGGGAGG
AATGTCTAGTCTGTCCAAGTCACAGCTTCTCTAGTGCACCTGAAGTTACATTATGCGAGAACAAACAGTTGGAGTTTAAC
AACTAGGTTTCTTATATGGTGGACGTAAGTTCTGACAGGATGAAAACTGGACTACAGCCCATATATGTGAGCATCAGCAC
GGCAGAGGGAACCTCTCATAGGAACAACTCTATTCATTAATTGGTTGAGAAGCATTTTTCATTTCCTTCAACCATGTGCA
CGCATGCACACATACAAGCTGCAATTGGTGAAAATGAAGGAGTACTCCTTATGCTGCAATTTCTCATGTGACCTTCCCAA
TACTATTGCTACTTGGGTTGAGTAGCCTGCAAGGCAAGGAGCGTACCCCTGTGGCAAACTTATCCTGGACCATCATAGTA
GGCTCGGTTGTCTGAATCTTGGAGTTCTGCTAACATTATCACGAATACTACTTTGACATTGAACAAGTCC
>chr4A_1
GGAATAGGATT--GGGGGGGAAGTCCTACTCCCGGTAGGAGTAGGACTCCTCCTGCGCCTCTCTCTCTTGGCCGGCGCCC
C-TCCCCCCTTGGCTCCTTTATATACTGAGGTAGAGGCACCCCAAAGACACACAAGTTGACACAAGTTGATCCACGTGAT
CTATTCCTTAGCCGTGTGCGGTGCCCCCTGCCACCATATTCCTCGATAATACTGTAGCGGAGTTTAGGCGAAGCCCTGCT
GCTGTAGTTCATCAAGATCATCACCACGCCGTCGTGCTGACGAAACTCTTCCCCGACACTTTGCTGGATCGGAGTCCGGG
GATCGTCATCGAGCTGAACGTGTGCTCGAACTCGGAGGAGCCGTAGTTTCGGTGCTTGATCGGTTGGATCATGAAGACGT
ACGACTACTTCCTCTACGTCGTGTCATTGCTTCCGCAGTCGGTCTGCGTTGGGTACGTAGATAACACTC-TCCCCTCGTT
GCTATGCATCACATGATCCTGTGTGTGCGTAGGAAATTTTTTGAAATTACTACGAAACCCAACA----------------
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>chr4A_1
GGAATAGGATTGGGGGGGGGGAGTCCTACTCCCGGTAGGAGTAGGACTCCTCCTGCGCCTCTCTCTCTTGGCCGGCGCCC
CCTCCCCCCTTGGCTCCTTTATATACTGAGGTAGAGGCACCCCAAAGACACACAAGTTGACACAAGTTGATCCACGTGAT
CTATTCCTTAGCCGTGTGCGGTGCCCCCTGCCACCATATTCCTCGATAATACTGTAGCGGAGTTTAGGCGAAGCCCTGCT
GCTGTAGTTCATCAAGATCGTCACCACGCCGTCGTGCTGACGAAACTCTTCCCCGACACTTTGCTGGATCGGAGTCCGGG
GATCGTCATCGAGCTGAACGTGTGCTCGAACTCGGAGGTGCCGTAGTTTCGGTGCTTGATCGGTTGGATCGAGAAGACGT
ACGACTACTTCCTCTACGTCGTGTCATCGCTTCCGCAGTCGGTCTGCGTTGGGTACGTAGACAATACTC-TCCCCTCGTT
GCTATGCATCACATGATCCTGTGTGTGCGTAGGAAATTTTTTGAAATTACTACGAAACCCAACAA---------------
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>chr7A_1
GGAATAGGATT---GGGGGGGAGTCCTACTCCCGGTAGGAGTAGGACTCCTCCTGCGCCTCTCTCTCTTGGCCGGCGCCC
CCTCCCCCCTTGGCTCCTTTATATACTGAGGTAGAGGCACCCCAAAGACACACAAGTTGACACAAGTTGATCCACGTGAT
CTATTCCTTAGCCGTGTGCGGTGCCCCCTGCCACCATATTCCTCGATAATACTGTAGCGGAGTTTAGGCGAAGCCCTGCT
GCTGTAGTTCATCAAGATCGTCACCACGCCGTCGTGCTGACGAAACTCTTCCCCGACACTTTGCTGGATCGGAGTCCGGG
GATCGTCATCGAGCTGAACGTGTGCTCGAACTCGGAGGTGCCGTAGTTTCGGTACTTGATCGGTTGGATCGTGAAGACGT
ACGACTACTTCCTCTACGTCGTGTCATCGCTTCCGCAGTCGGTCTGCGTTGGGTACGTAGACAACACTC-TCCCCTCGTT
GCTATGCATCACATGATCCTGTGTGTGCGTAGGAAAATTTTTGAAATTACTACGAAACCCAACAA---------------
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>chr7A_1
GGAATAGGATTGGGGGGGGGGAGTCCTACTCCCGGTAGGAGTAGGACTCCTCCTGCGCCTCTCTCTCTTGGCCGGCGCCC
CCTCCCCCCTTGGCTCCTTTATATACTGAGGTAGAGGCACCCCAAAGACACACAAGTTGACACAAGTTGATCCACGTGAT
CTATTCCTTAGCCGTGTGCGGTGCCCCCTGCCACCATATTCCTCGATAATACTGTAGCGGAGTTTAGGCGAAGCCCTGCT
GCTGTAGTTCATCAAGATCGTCACCACGCCGTCGTGCTGACGAAACTCTTCCCCGACACTTTGCTGGATCGGAGTCCGGG
GATCGTCATCGAGCTGAACGTGTGCTCGAACTCGGAGGTGCCGTAGTTTCGGTACTTGATCGGTTGGATCGTGAAGACGT
ACGACTACTTCCTCTACGTCGTGTCATCGCTTCCGCAGTCGGTCTGCGTTGGGTACGTAGACAACACTC-TCCCCTCGTT
GCTATGCATCACATGATCCTGTCTGTGCGTAGGAAAATTTTTGAAATTACTACGAAACCCAACA----------------
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>chr3A_1
GGAATAGGATT--GGGGGGGGAGTCCTACTCCCGGTAGGAGTAGGACTCCTCCTGCGCCTCTCTCTCTTGGCCGGCGCCC
CCTCCCCCCTTGGCTCCTTTATATACTGAGGTAGAGGCACCCCAAAGACACACAAGTTGACACAAGTTGATCCACGTGAT
CGATTCCTTAGCCGTGTGCGGTGCCCCCTGCCACCATATTCCTCGATAATACTGTAGCGGAGTTTAGGCGAAGCCCTGCT
GCTGTAGTTCATCAAGATCGTCACCACGCCGTCGTGCTGACGAAACTCTTCCCCGACACTTTGCTGGATCGGAGTCCGGG
GATCGTCATCGAGCTGAACGTGTGCTCGAACTCGGAGGTGCCGTAGTTTCGGTGCTTGATCGGTTGGATCGTGAAGACGT
ACGACTACTTCCTCTACGTCGTGTCATTGCTTCCGCAGTCGGTCTGCGTTGGGTACGTAGACAACACTC-TCCTCTCGTT
GCTATGCATCACATGATCCTGTGTGCGCGTAGGAAATTTTTTGAAATTACTACGAAACCCAACAAA--------------
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>chr3A_1
GGAATAGGATT--GGGGGGGGAGTCCTACTCCCGGTAGGAGTAGGACTCCTCCTGCGCCTCTCTCTCTTGGCCGGCGCCC
CCTCCCCCCTTGGCTCCTTTATATACTGAGGTAGAGGCACCCCAAAGACACACAAGTTGACACAAGTTGATCCACGTGAT
CGATTCCTTAGCCGTGTGCGGTGCCCCCTGCCACCATATTCCTCGATAATACTGTAGCGGAGTTTAGGCGAAGCCCTGCT
GCTGTAGTTCATCAAGATCGTCACCACGCCGTCGTGCTGACGAAACTCTTCCCCGACACTTTGCTGGATCGGAGTCCGGG
GATCGTCATCGAGCTGAACGTGTGCTCGAACTCGGAGGTGCCGTAGTTTCGGTGCTTGATCGGTTGGATCGTGAAGACGT
ACGACTACTTCCTCTACGTCGTGTCATTGCTTCCGCAGTCGGTCTGCGTTGGGTACGTAGACAACACTC-TCCTCTCGTT
GCTATGCATCACATGATCCTGTGTGCGCGTAGGAAATTTTTTGAAATTACTACGAAACCCAACAA---------------
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>chr3A_1
GGAATAGGATT--GGGGGGGGAGTCCTACTCCCGGTAGGAGTAGGACTCCTCCTGCGCCTCTCTCTCTTGGCCGGCGCCC
CCTCCCCCCTTGGCTCCTTTATATACTGAGGTAGAGGCACCCCAAAGACACACAAGTTGACACAAGTTGATCCACGTGAT
CGATTCCTTAGCCGTGTGCGGTGCCCCCTGCCACCATATTCCTCGATAATACTGTAGCGGAGTTTAGGCGAAGCCCTGCT
GCTGTAGTTCATCAAGATCGTCACCACGCCGTCGTGCTGACGAAACTCTTCCCCGACACTTTGCTGGATCGGAGTCCGGG
GATCGTCATCGAGCTGAACGTGTGCTCGAACTCGGAGGTGCCGTAGTTTCGGTGCTTGATCGGTTGGATCGTGAAGACGT
ACGACTACTTCCTCTACGTCGTGTCATTGCTTCCGCAGTCGGTCTGCGTTGGGTACGTAGACAACACTC-TCCTCTCGTT
GCTATGCATCACATGATCCTGTGTGCGCATAGGAAATTTTTTGAAATTACTACGAAACCCAACA----------------
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>chr2A_1
GGAATAGGATT--GGGGGGGGAGTCCTACTCCCGGTAGGAGTAGGACTCCTCCTGCGCCTCTCTCTCTTGGCCGGCGCCC
CCTCCCCCCTTGGCTCCTTTATATACTGAGGTAGAGGCACCCCAAAGACACACAAGTTGACACAAGTTGATCCACGTGAT
CGATTCCTTAGCCGTGTGCGGTGCCCCCTGCCACCATATTCCTCGATAATACTGTAGCGGAGTTTAGGCGAAGCCCTGCT
GCTGTAGTTCATCAAGATCGTCACCACGCCGTCGTGCTGACGAAACTCTTCCCCGACACTTTGCTGGATCGGAGTCCGGG
GATCGTCATCGAGCTGAACGTGTGCTCGAACTCGGAGGTGCCGTAGTTTCGGTGCTTGATCGGTTGGATCGTGAAGACGT
ACGACTACTTCCTCTACGTCGTGTCATTGCTTCCGCAGTCGGTCTGCGTTGGGTACGTAGACAACACTC-TCCTCTCGTT
GCTATGCATCACATGATCCTGTGTGCGCGTAGGAAAAATTTTGAAATTACTACGAAACCCAACA----------------
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>chr7B_1
GGAATAGGATT--GGGGGGGGAGTCCTACTCCCGGTAGGAGTAGGACTCCTCCTGCGCCTCTCTCTCTTGGCCGGCGCCC
CCTCCCCCCTTGGCTCCTTTATATACTGAGGTAGAGGCACCCCAAAGACACACAAGTTGACACAAGTTGATCCACGTGAT
CTATTCCTTAGCCGTGTGCGGTGCCCCCTGCCACCATATTCCTCGATAATACTGTAGCGGAGTTTAGGCGAAGCCCTGCT
GCTGTAGTTCATCAAGATCGTCACCACGCCGTCGTGCTGACGAAACTCTTCCCCGACACTTTGCTGGATCGGAGTCCGGG
GATCGTCATCGAGCTGAACGTGTGCTCGAACTCGGAGGTGCCGTAGTTTCGGTGCTTGATCGGTTGGATCGTGAAGACGT
ACGACTACTTCCTCTACGTCGTGTCATCGCTTCCGCAGTCGGTCTGCGTTGGGTACGTAGACAACACTCTTCCCCTCGTT
GCTATGCATCACATGATCTTGCGTGTGCGTAGG-AAAATTTTGAAATTACTACGAAACCCAACA----------------
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>SNPs
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-------------------------------------------S------------------------------------
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---------------------------------------------------S----------------------------
------------------------------------------------------------------SSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_204
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------------------------CCCCTGCCACCATATTCCTT------------------------------------
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>reverse_1426
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-----------------------------------------------------------------GGACTATCGCGGAGA
CAAGG---------------------------------------------------------------------------
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>forward_1165
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-------------------------CATCAGGCTACAGTCGCGAT-----------------------------------
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>reverse_2492
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-----------CTTGGGTTGAGTAGCCTGCA-------------------------------------------------
----------------------------------------------------------------------
