>input_sequence_73618
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----------------------------------------------------CTATATAAACTATATTATGAGTGAAGAG
CTCACTAC---ACAAACCACAACATAAGGGCTAGCGAGCATGGCTACCACCACTAGCTCTGCTGCCCTCCTCATCGCCCT
GGTCGCCCTGGCTGGCCTCGCCGACATCCTCGCCGTTCATGCTCAGGCCATGGTGGCCGTAAATACGACGATGGAGCACT
CG---AC---GGAGCTGGATGGGAAGATGCAGTGCATGATGGGGTGCTTCACGACGGTGATGATCTGCGCATTCAAGTGC
ATGATTCCCTGCGTGATCGCGTGCCCCACCCTACCGCTCTGCATCACCAACTGCGACCTCAAAACCGTTGGCTGCATGTT
CCGCTGCGGCACCGCGCCCTTGCCCCCCAAGCCCAAA------------CCCAAGCCCAAGCCCAAGCCCAAGCCACCTG
CCCCGCC------TGGCCTGCAGCTAGACGCCCACG-----ATCACCATGCATGATTGGTTGGCACATTATCTCAAAAAC
AAAAGATTGGTTGGTACCAGTAAGTATATACGTA--CTTACTAAAAAGAAGACACACAT---------------------
---------ATATAGACCAATGTGTGTAACCCGAT-ATATGTTGGTTGTGCGTTTGACATGAAGAATCTGCAATGGATTT
TTAGATGTGTATGTAATTCTAGAA--------------------------------------------------------
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>chr4A_1_TraesCS4A01G312000
TGAACCTCCAATAGGTTTTTAGGGTAAACCTAGGTAGTTAAGAGGGCATCTGGAAGGCCTATGAAGCAAGAATTGTTTTG
GAAGTTCCTCCATAAAGAGAGGAAGAGACAGCTTCTCTATAGTTGCAATGGATAGCGGGATGGCTATGTAGCTGCGGTGA
AACTCGTCCGCTGTTCTAGATCAGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATTTTAGGGTTTGTCCCACTTCATCCTAATTATTTACAAAT
CAAAAGAAGCCACCTCAACCTGGCCCGTGAAGTTCCTGTAAACCCTCCATAGCTGTAGCATTGCTCCTTGGACACAATGA
AGAGGCATCCTCCAG-GGATCGAGAGACCGAGGCACATCACTATACTTCACCCCACGGGTGCGGACTGATCTTAGGGTAA
TCGGACGGACATATTTTGAAGATGATGAGAATTAACGTAGGGGCTTCAATGATGCCATCTCCAATTAGTATAGTATACTA
TAAAATAAGAAAGATGCACTAGTATTGTCCATCGAACGAACTGTTATTTGCTACAT-----ATTTCTTGGTTCACACATA
CTTGATGCATCCATATATTATACGTTAATCATCACCATGCCGTGTGT------GTGCGCGAGTGTGTGGAAAAGCAACAA
TAGAACGAACACACACAAAATGCAAGTCGAGTTTGATACGCTAAACCCAGCCCTATATAAACTATATTATGAGTGAAGAG
CTCACTAC---ACAAACCACAACATAAGGGCTAGCGAGCATGGCTACCACCACTAGCTCTGCTGCCCTCCTCATCGCCCT
GGTCGCCCTGGCTGGCCTCGCCGACATCCTCGCCGTTCATGCTCAGGCCATGGTGGCCGTAAATACGACGATGGAGCACT
CG---AC---GGAGCTGGATGGGAAGATGCAGTGCATGATGGGGTGCTTCACGACGGTGATGATCTGCGCATTCAAGTGC
ATGATTCCCTGCGTGATCGCGTGCCCCACCCTACCGCTCTGCATCACCAACTGCGACCTCAAAACCGTTGGCTGCATGTT
CCGCTGCGGCACCGCGCCCTTGCCCCCCAAGCCCAAA------------CCCAAGCCCAAGCCCAAGCCCAAGCCACCTG
CCCCGCC------TGGCCTGCAGCTAGACGCCCACG-----ATCACCATGCATGATTGGTTGGCACATTATCTCAAAAAC
AAAAGATTGGTTGGTACCAGTAAGTATATACGTA--CTTACTAAAAAGAAGACACACAT---------------------
---------ATATAGACCAATGTGTGTAACCCGAT-ATATGTTGGTTGTGCGTTTGACATGAAGAATCTGCAATGGATTT
TTAGATGTGTATGTAATTCTAGAATTAAAACTTGTTGTACCAAGCATATATCCATCTTCTAGCAGCTGACGTAGCACGTA
GGTGCATAAAAATGGGGAAACAGTTGTGCCCTTTTGCTTAGAAAAACTAAGAAGGAAACTCACCCAAACAAAAAGCCACT
TTGGAAACCGGGTGCATTGGAGCCCTATTTTTTGAATTATGCCAAAATGCTATTTTGAAGTTTCAAAAAATTCTGAAAAC
AAATCAACATGTTTATATGAATGTACATCACACATGTGTAAATTTTGTCCTCCAATACACCCGGGTTTCAAAAATCCACT
CTCACCCAACCAATGCCTATCAACTTGTGGAGGTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT
CTCTCTCTCTCTCTCTCTCTCTCTCCTGCGCGCGCGCACACACACACAACGACAACCAACCGTCGACCACATCAAGTTTT
TTTCCAGGAGAGCTACCCTCTTTGGCCCAGGAATCGATAGATCGATCCAAGAGATCTGACGACCGAGAACACCCAAATCA
CAACGGACAGCGAGAAAGAG------------------------------------------------------------
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-------------------------------------------------------------------CGTAAGATAACAT
AACCGCATTACAACTACTATTATGTTAAT---------------------------------------------------
--------------------------------CCCAGCCGCATAAGTACGTGCTAAGTATTATGTCTTCCTAG-------
------------TTTGAGGGCATTCCTACAACCAATTAATTTGCATGCATACAACCAAATACTCCCTCTGTCTCACAATA
TAAAACATTTTTTGTAAGCTAAAATAGCTTGAAAATTTTACCTTGCAAAAACGTCTTATATTGTGAGACCGACGGAGTAG
TAAATAGCTAGCTGGCTCTTCTCTGCCTGCCTATTTGGGTTTTACGCACGTTTCCAAAAATTTTTCCTTTCTTGCCTCTA
AAAAACACCTCTTTCTTTATTTTCTTCTTTTCTTTCTTATAATATATACATATATGTTGTATGCGTTCACGTACTCCGCT
CAATTTTCATAATTATTAATTAAAACACCAAGCGTCGCAGCCCAGCCCATCCC
>chr4D_44
-------------------------------------------GGGCATCTGGAAGGCCTATGAAGCAAGAATTGTTTTG
GAAGTTCCTCCATAAAGAGAGGAAGAGACATCTTCTCTATAGTTGCAATGGATAGCGGGATGACTATGTTGCTGCGGTGG
AACTCAT-CGCCATTCTAGATCAGGAGGATAAGATCCCCTCTTCTTCTTTTTTCCCAAGGGAGCTAGGAAATGAATTGTA
TGGGGTGAGATTTGCATGGTTAATGGACTGACCCTTCTCCCCTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNCCTG---------------------------CTTCATCCTAATTACAAATAAAA
AAATG--AGTCACCTCAACCCGGCCCCTAAAGTTCCTGTAAATCCTCGGTAGCTGTAGCATTGCTCCTTGGACACAGTGA
AAAGGCATGCTCCAG-GGATCAAGAGACCGGGGCACATCACTATACGTCATCCCACGGTTGCGGACTGATCTTAGGGAAA
GCGGACGGACATGTTTTGAAGATGATGAGAATTAACATAGAGGATTCAATGATGCCTTCTCCAATTAGTATAG--TACTA
TAAAATAAGAAAGATGTACTGGTATTGTCCAGCGAACGAACTGTTATTTGCTACAT-----ATTTCTTGGTTCACACATA
TTTCATGCATCCATATATTATACGTTAATCATCGCCATGCCGTGTGTGTGCGCGTGCGCGAGTGTGTGGAAAAGCAACAA
TAGAACGAACACACACAAAATGCAAGTCGAGTTTGATATGCTAAACCCAGCCCTATATAAACTATCTTACGAGTGAAGAG
CTCACTACTGCACAAACCACAACACACGGGCCAGCGAGCATGGCTACCACCACCAGCTCTGCCGTCCTCCTCATCGCCCT
GGTCGCCCTGGCTGGCCTCGCCGACGTCCTCGCCGTTCATGCTCACACGGCGTTGGCGGTAAAGACGACGACGGAGCGCC
CA---ACAATGGAGCTGGATGGGAAGATGCAGTGCATGATGGGGTGCTTCACGACGGTGATGTTCTGCGCATTCAAGTGC
ATGATCCCCTGCGTGGTCGTGTGCCCCACCCTGCCGCTCTGCATCACCAACTGCGACCTCAAGACCCTTGGCTGCATGCT
CCGCTGCGGCATGATGCCCTCA---CCCAAGCCCAAACCCAAACCCAAGCCCAAGCCCAAGCCCAAGCCCAAGCCACCTG
CCCCGCCGGCGCCGGGCCTGCACCTAGACGCCCACAAAATTACCAGCAGGCATGATTGATCGGTACATTGTCTCAAAAAC
ACAAGATTGGTTAGTACCAGTGATATGAGTGGTATTCTTACTAAAAAGAAGGCACACATGCATACATATATATATATATA
TATATATATATATAGACCAATTTGTGTAATCCGATGATGTATTGGTTGTGCATTTGA-------------CAATGGATAT
TTAGATGTGTACGTAATTCTAGAATTAAAACTTGTTGTACCAAGCATATATCCATCTTCTAGCGCT--------------
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>chr4B_640
AAGAGGCAT-----------------------------------------------------------------------
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------ATGCTCCAGAGGATCGAGAGACCGAGGCACATCACTATACGTCATCCCACGGTTGCGGACTGATCTTAGGGTAA
GCGGACGGACATATTTTGAAGATGATGAGAATTAACGTAGAGGCTTCAATGATGCCTTCTCCAATTAGTATGG--TG---
--AAATAAGAAAGATGCACTAGTATTGTCCAGCGAATGAACCGTTATTTGTTACATATTAAATTTCTTGGTTCACACATA
TTTCATGCATCCATATATTATACGTTAATCATCACCATGCCGTGTGTGTGT------GCGAGTGTGTGGAAAAGCAACAA
TAGAACGAACACACACAAAATGCAAGTAGGGTTTGACACGCTAAACCCAGCCCTATATAAACTATCTTACGAGTGAAGAG
CTCACTACTACACAAACCACAACACACGGGCCAGCGAGCATGGCTACCAGCACCAGCTCCGCTGCCCTCCTCATCGCCCT
GGTCGCCCTGGCTGGCCTCGCCGACGTCCTTGCCGTTCATGCTCACGCCGCGGTGGCGGTAAAGACGATGATGGAGCGCC
CAACAACAATGGAGCTGGATGGGAAGATGCAGTGCATGATGGGGTGCTTCACGATGGTGATGTTCTGCGCATTCAAGTGC
ATGATTCCCTGCGTGGTCGCGTGCCCCGCCCTGCCGCTCTGCATCACCAACTGCGACCTCAAGACCCTTGGCTGCATGCT
CCGCTGCGGCATGATGCCCTCG---CCCAAGCCCAAG------CCCAAGCCCAAACCCAAGCCCAAGCCCAAGCCACCTG
CCCCGCC------GGGCCTGCACCTAGACGCCCTCG-----ATCACCATGCATGATTGATTGGTACATTATCTCG-AAAC
AAAAGATCGGTTGGTACCAGTAAT--------------------------------------------------------
---------------------GTGTGTAATCCGATGATATATGGGTTGGGCATTTGACATGAAGAATCTTCAATGAATAC
ACTTTCAGCTTATTAGCGACCAAGATGGGGTTGTTGAATAAGTATAGTTTGAGATCTCAGAAAGGGATGTCACTTGTCAA
CTTCTTCTTTCTAGGTGGAGTTGTCATGTGAGTTCAAGCATTAAGCAGCGGTACCCCCTGTCTCCTACCCGATACATAAA
CTGCTAATAAGATCTTTC--------------------------------------------------------------
------------------------ATATCATACATCTTAACCTTTGGGCATCTGATACGTTTTGCAATGGTTGTGTGTGC
CTCAATGGATTTGATATTTTATTTCACTTGTATCCGGCGGTGTCATACTATAAACCTCGGTAGCTTCCCAGGATCGACGT
CCCAAACACACTTCTAGTGGTTTAACTTCCCACACTCGAGCCCTAAGGC-------------------------------
--------------ACACTCCTTGGCCCATCATAATGTTTTTCAAGCACAATATATTTAGTACAAGGAAGACTGAGCTTG
CAAGCCTAGCCTGGCTCACGACATTTTGAAAATTTTCTTTGATCCTCGAGTTGATGCCCTTGCCATGGTCGATGGATGCC
TCGACCTCAGTCGATGGAAACCAAAAATTATGCATTAATGGCAAGTGAATTTGTAGAGACCAGAAGTGCATGTGAAAACT
CTCTCCGGCAAGCAAATGGGGAGGATATAATCAATATTTATGCATAGGGATTACTATATACTACCTCCGTCTCATAATAT
AAGAGCATTTTTTACATTACACTAGTGTCAAAAACACTCTTATATTATGAGACGGGGGGAGTAGTACTGTAGTAAAACTG
CGTGCGTGTGGTGTGGCCGTGTGGGATCCCAACCCAACCGCATAAGTACGTGCTAAGTACTATGTCTTCCTAATGCCCGC
CCGCCTGCCTACTTTGAGGGCATTCCTACAACCAATTAATTTGCATGCATACAACCAAATACTTCCTCTGTCTTACAATA
TAAAACATTCTTTGTAAGCTAAAATAGCTTGAAAACTTTACCTTGCAAAAACATCTTATATTGTGAGACCGAGGGAGTAG
TAAATAGCTATCTAGCTCTTCTTTGCCTGCCTATTTGGGTTTTATGCACATTTCCAAT--TTTCTCCTTTCTTGCCTCTA
AAACACACCTCTTTCTTTCTTTTCTTCTTTTCTTTCTTATAATATATACATATACGTTGTACGCCTTTATGTACTCTGCT
CAATTTTCATAATTATTAATCAAAACACCAAGCGCCGCAGCCCAGCCCATCCC
>SNPs
SSS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------------------------------------
------------------------------S-------------------------------S------S---------S
-----S-S---SS-----------S-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------------------------------------
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--------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--------------SSS-S---S
S--SSSS--S----------S-----S-S-------------S----SS---------------------------S---
-S------S-------------------------------------S---S-------S---------------------
S---------------------------------------S---------------S----------------SS-----
-------------------------------S------------------------------------------------
S--S----------------------------------------------------------------------------
-----------------------------------------------------------------S---S----------
------------------------S-S----S---------------------S--------------------------
-------------------------S-------------------S---SS------S-----S-------------S-S
-S------------------------------------------------------------S-----------------
---------------S----------------S-----------------------------S---S-----------S-
-----------SSSS-----S-SSS-------------------------------------------------------
-------------S--------S-----------------------------------S----S----------------
-----------------------SSSS-SSS--------------------S----------------------------
-----------------------------S----------S----------S-----------------S--------S-
-----------S---------------------------------------------------S-SSSSSSSSSSSSSS-
SS-SSSSSSSSSS--S-S-SSS--SS--SSSS--SSSSS-SS--SSSSSS-S-SSSSSSSSSS--S-S-SS-S-SSS-SS
S--SS--SSS-S-SSS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSS-S----S----S-SS-SS---S-S-S--SS----SSSSS-SSS-SSSSSSSSSSSS
----SSSS-SSSSSSSS-S-SSSSSSS-S-SSSS-SSSSSSSSSS-SSSSSSSS-SSSSSSSSSS--S-SSSS--SSSS-
-S-SSS-S-S--SSSSS-SSS-SSS--S-S-S-S-S-SSS-S-SS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSS--S---S--------SS-SSSSS-SSS--S-S-SS-SSSSSS-S-SS--SSS---S--SS-SS-SS
---SSSSSSS-SS-SSSSS-------------------------------------------------------------
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----------------------------------------------------------------------SSS----S--
--SS-----SSSSSS-S--SSS-SS-SSS---------------------------------------------------
------------------------------------S----------------------S------------S-------
---------------------------------------------------------------S---------S------
---------S-------------------------S----------------S-------------------S-------
----------S--S--------S---------------------S----S-------SSS---S----------------
---S--------------S-----------------------------------S------S--S--S-S------S---
--------------------S-------------S------------------
>forward_143
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-------------------------------------------TGCAATGGATAGCGGGATGG-----------------
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>reverse_2125
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--------------------------------------------CACAACGACAACCAACCGTC----------------
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