>input_sequence_73610
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------ATGGCCTCCGA
CCAC---CGCCTCGGCGCGCTCAAGGCGTTCGACGACACCAAGGCCGGGGTCAAGGGCCTCGTGGACGCGGGAGTCACGG
CCGTCCCCGCCATCTTCCACCACGCGCCCGAATCCCTCAACGACGCGCCC---CATCACCATG---ACCACC--------
----AGTTCGCCATCCCGGTCATCGACCTCGCCGGCCTCGCGACACCGTTCGGGCGAGTCTCGGCGGTCGGCGCGGTGAA
GGCGGCCGCGGAGACGGTGGGCTTCTTCCATGTGGTGAATCACGGTGTGCCGGAGGCGGCACTGTCGGCGATGCTCGCGG
CGCTGCGGGGCTTCAACGAGGAGCCGGTGGATGCCAAGGCGCCGTACCACACCCGGGACGACGGCCGGCGGGTTAGGTAC
CATAGCAACTTCGACCTGTTCCAGTCGCCGGCGGCAAACTGGCGTGACACGCTGTACATGGAGATGGCGCCGGAGCCGCC
GGCGCCCGAGGAGATCCCTCCGGCGTGCAGGACCATCGCGCCGGAGTTCGCGGGGCTGGTGCAGGGGC---TGGGGAGCA
CGCTGCTCGGGCTGCTGTCGGAGGCGCTGGGCCTCCGGCAAGGGCACCTGGAGGAACACACACAGTGCCT-GAGGGGCTG
A-------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------
>chr3B_1_TraesCS3B01G457800
GCACATGTATCAATGACTTACTGTTCATCAAATCGTTGTGTACTAACACCGTATCACCTTTTGGGTACAACCACACATGT
TTTAATACATCAAAATTGAAATCGGTAAATATCTGGAGCCATCACTCTACAACTTACGCACCACAATTTTTTTCCGGATA
TTTGAATATTTAAATTTCAAACAACGTATATTCAAAAACTTTTGGAATAAGATAATGTTTTTTTGTGGAATAACTTTCAT
GATATTCTCGATGGAACAATGTAAAATTAACACCATACAAAAGTTAACATTCACACTTTTTGTACTAGATTTTTTTGATT
TTTTTCTCTGATGTCGATGGGAGTTTTTCCATCACGAAACTTTTTATACGAGTACAAAAGAAGATCAAGTTTATTTCCAA
AAAAGCTTCAGTTTTTTTTGAGTTTTTTCATAGTTACTACAAAAGTTCCCATATACGAATATTTCTGTGATGACCGTAAA
CTTGGTCTTAGGATGGATCATGGCCCATTTTTTGGCATGTCAATGCTTCGTTGCCCACTCTATTTCATTTCTTGCTAGTG
TTGGCTAAAGCATTGACTAGTAAAATCTTGACCAAAATTTTAGCAAGCGAAATAGTATTTGGTAAGGTTAACTTAGGCTA
AAATTAAGGAAGTACCTAGAACTCATCTAGATAAGATATAATTTGGTCTCATTCACTTTAAAAACAAGAACAGATACAAT
CCACGTCAGCACACACGCATCTTATAGCATCACATACAATGGCTATAAAAAATGAATGAGACCAAATTAGATTTCATCTA
GATGAGTTCTAGCAAAACTGTAAAATCAAACACAATCGAAGAAATCCACGCTTTGAGATAGGCAATACACGTGGACGTAT
ACACTGCCTGTGAGCAATCGTGGAACA-----TACGATCAGTAAAGAGACACGACTACCTCACTCACTTCCGC-------
----ACAC---AAACTGAATTCAAAGGATCGCC--------ACACTGCACAAGC--GCTCCAATAATCCATGGCCTCCGA
CCAC---CGCCTCGGCGCGCTCAAGGCGTTCGACGACACCAAGGCCGGGGTCAAGGGCCTCGTGGACGCGGGAGTCACGG
CCGTCCCCGCCATCTTCCACCACGCGCCCGAATCCCTCAACGACGCGCCC---CATCACCATG---ACCACC--------
----AGTTCGCCATCCCGGTCATCGACCTCGCCGGCCTCGCGACACCGTTCGGGCGAGTCTCGGCGGTCGGCGCGGTGAA
GGCGGCCGCGGAGACGGTGGGCTTCTTCCATGTGGTGAATCACGGTGTGCCGGAGGCGGCACTGTCGGCGATGCTCGCGG
CGCTGCGGGGCTTCAACGAGGAGCCGGTGGATGCCAAGGCGCCGTACCACACCCGGGACGACGGCCGGCGGGTTAGGTAC
CATAGCAACTTCGACCTGTTCCAGTCGCCGGCGGCAAACTGGCGTGACACGCTGTACATGGAGATGGCGCCGGAGCCGCC
GGCGCCCGAGGAGATCCCTCCGGCGTGCAGGACCATCGCGCCGGAGTTCGCGGGGCTGGTGCAGGGGC---TGGGGAGCA
CGCTGCTCGGGCTGCTGTCGGAGGCGCTGGGCCTCCGGCAAGGGCACCTGGAGGAACACACACAGTGCCT-GAGGGGCTG
AGCCTCGCCTGCCACTACTACCCGGCGTGCCCGGAGCCGCAGCTGACGCTGGGCACCACCAAGCACTCCGACCCCAGCTT
CCTCACCGTGCTCCTCCAGGACGCCGTCGGCGGACTTCAAGTTCTCGTTC---ACGACGAGAAGCAGCAGCCGGCGTGGG
TAGACGTGCCGGCAGTGGCGGGGGCGCTGGTGGTGAACATCGGCGACTACCTACAGCTCACGTCCAACGACAGGTTCAAG
AGCGTAGAGCACCATGTGGTGGCCAAGAGCGCGGGGCCGAGGGTGTCGGTGGCCTGCTTCTTCCGGGCG---------GA
CGCGTGGACGAGGGTGCTCGAGCCGATCGTTCCCGACGG---------CGCCGACGCAAGGTACAGGAACACGACGGTGG
ACGAGATGGACAGGCA---CTACAGGGCCAAGGGCCTTGACGGCGTCTCCGCACTCCAACACTTCAGGATCTAACCAATC
ATTCT-----CACCCAAATGTATTTGTTGTGCTTATGATCCTAATTGATGATCCGGTTTGAACCGTATGCTACGT-AGTA
CATCCCAGGAATGCG------AGATGCACTCTGTCTACTCTTCGAATGGTGGAATTTGTGGATTTTGCTGGAAATGCAGA
TCAGATTTACCTGGAATTTGCAGGTA-------------GTAAGAAAACATAGAGTAACACGAACTAGGAATCAACAGAA
TAGAC-CTCCTACAAATTGAAGGGCATTACTTGAAGGAGGCGGACGTTTGGTCTATGGAGACATTGGTCTATGGGGACAT
ATGTCCCCGGTATCCACAACGTGCGAAGAGACTTTGCGATCAATAGCTAAACTAGTGAGTAAGGAAATCGGGCAGACATC
TGAGGAGATAAAGCGCGTCATACACTGCTGCAGCAGTGTTGTACAGTCAGGAGTACAGGCTAGAACATGATCTTGAACAA
TGTATTGAAGCAATCAATTCTGAGACATAAATGCCACTCTTCTGAAACACGTTTGGTCTTGTTCTAAGGTAGCCACTGTC
AGAATCCTGTC
>chr3A_864
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------AATAGACGTCGACGTAT
ACACTGCCTGTCAGCAATCATGGAA-----TGTACGGTCAGTAAAGAGCCACGACTACATCACTCACTACC---ACACAC
ACGTAGAC---AAACTGAATTCAAAGGATCGAC--------ACACTGCAGAAGCTAGCTCCAATTACCCATGGCCTCCGA
CCAC---CGCCTCGGTGCGCTCAAGGCGTTCGACGACACCAAGGCCGGCGTCAAGGGCCTCGTCGACGCCGGAGCGACGG
CCGTCCCCGCCATCTTCCACCACGCGCCCGAATCCCTCAACGACGCGCCG---CATCACCATG---ACCATC--------
----AGTTCGCCATCCCGGTCATCGACCTTGCCGGCCTCGCGACACCGTCCGAGCGAGCATCGGCGGTCGGTGCCGTGAA
GGCGGCCGCGGAGACGGTAGGCTTCTTCCAGGTGGTGAACCACGGCGTGCCGGAGGAGGCCATGTCGGCGATGCTCGCGG
CGCTGCGGTGCTTCATCGAGGAGCCGGCGGTGGCCAAGGCGCCGTACTACACCCGTGACCACGGCCGGCGCGTGAGGTAC
CAGAGCAACTTCGACCTGTTCCAGTCGCCGGCGGCCAACTGGCGCGACACCCTGTTCATGGATATGGCACCGGAGCCGCC
GGCGCCCGAGGAAATCCCCCCGGCGTGCAGGGCAATCGCCCCAGAGTTCGCAGGGCTGGTGCAGCGGC---TGGGGAGCA
CGCTGCTCGGGCTTCTGTCGGAGGCGCTGGGCCTCCGGCGAGGGCACCTGGAGGAGGACGCCGCGTGCCTAGAGGGGCTG
AGCCTCGCCTGCCACTACTACCCGGCGTGCCCGGAGCCGCACCTCACGCTGGGCACAACCAAGCACTCCGACCCCAGCTT
CATCACCGTGCTCCTCCAGGACGCCGTCGGCGGCCTCCAGGTGCTCGTCGACGACGACGACAAGCAGAACCCGGCGTGGG
TGGACGTGCCGGCAGTGGCGGGGGCGCTGGTGGTGAACGTGGGCGACTACTTGCAGCTCCTGTCCAACGACAGGTTCAAG
AGCGTGGAGCACCGCGTGGTGGCCAAGAGCGCGGGGCCGAGGGTGTCGGTGGCCTGCTTCTTCGGGGCG---------GA
GGGGTCGACGAGGGTGCTTGCGCCGATCGTCGCTGACGG---------CGGCAACGCCCGGTACAGGAACACGACGGTGG
ACGAAATGGCCAGGCA---CTACAGGGCCAAGGGCCTCGACGGCGTCTCCTCACTCCAACACGTCAGGATCTAATGAA--
--TCT-----CACCCAAATGTATTTGTCGTGCTTATGA------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------
>chr3B_865
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------ATAGACGTTGACGTAT
ACACTGCCTGTCAGCAATCATGGTA-----TGTACGATCAGTAAAGAGCCACGACTACATCGCTCACTTCCCCCACACAC
ACATACAC---AAACTGAATTCAAAGGATCGAC--------ACACTGCAGAAGCTAGCTCCAACCATCCATGGCCTCCGA
CCAC---CGACTCGGCGCGCTCAAGGCGTTCGACGACACCAAGGCCGGCGTCAAGGGCCTCGTCGACGCGGGAGCCACGG
TCGTCCCCGCCATCTTCCACCACGCGCCCGAATCCCTCAACGACGCGCCG---CATCACCATG---ACCACC--------
----AGTTCGCCGTCCCGGTCATCGACCTTGCCGGCCTCGCGACACCGTCGGAGCGAGCCTCGGTGGTTGGCGCCGTGAA
GGCGGCCGCGGAGACGGTGGGCTTCTTCCAGGTGGTGAACCACGGCGTGCCGGAGGCGGCCATGTCGGCGATGCTCGCGG
CGCTGCGGAACTTCATCGAGGAGCCGGTGGAGGCCAAGGCGCCGTACTACACCCGTGACTACGGCCAGCGCGTGAGGTAC
CAGAGCAACTTCGACCTGTTCCACTCGCCGGCGGCCAACTGGCGCGACACCCTGTTCATGGATATGGCACCGGAGCCGCC
GGCACCCGAGGAAATCCCACCGGCGTGCAGGGCCATCGCACCAGAGTTTGCCGGGCTGGTGCAGCGGC---TGGGGAGCA
CGCTGCTCGGGCTTCTGTCGGAGGCGCTGGGCCTCCCGCGAGGGCACCTGGAGAAGGACGCCGCGTGCCTAGAGGGGCTG
AGCCTCGCCTGCCATTACTACCCGGCGTGCCCGGAGCCGCACCTCACGCTGGGCACCACCAAGCACTCCGATCCCAGCTT
CCTCACCGTGCTCCTCCAGGACGCCGTCGGCGGCCTCCAGGTGCTCGTCGACGACGACGGCAAGCAGAACCCGGCGTGGG
TGGATGTGCCGGCAGTGGCGGGGGCGCTGGTGGTGAACGTGGGCGACTACCTGCAGCTCCTGTCCAACGACAGGTTCAAG
AGCGTGGAGCACCGCGTGGTGGCAAAGAGCGCGGGGCCGAGGGTGTCGGTGGCCTGCTTCTTCCGGGCG---------GA
CGGGTCGACGAGGGTGCTGGCGCCGATCGTCGCCGACGG---------CGCCGCCGCGCGGTACAGGAACACGACGGTGG
ACGAGATGGGCAGGCA---CTACAGGGCCAAGGGTCTCGACGGCGTCTCCGCACTCGAACACTTCAGGATCTAATGAA--
--TCTATTCTCACCCGAATGCATTTGCTGTGCTTATGGTCGGAATTCATGTTCGGGGTTGAATCATATGCTACTACTACA
TC------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------
>chr3A_865
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------ATAGACGTCGACGTAC
ACACTGCCTGTCAGCAATCATGGAATGTACTGTACGATCAGTAAAGAGCCACGGCTACATCACTCACTA---CCACACAC
ACGTACAC---AAACTGAATTCAAAGGATCGAC--------ACACTGCAGAAGCTAGCTCCAATCATCCATGGCCTCCGA
CCAC---CGCCTGGGCGCGCTCAAGGCGTTCGACGACACCAAGGCCGGCGTCAAGGGCCTCGTGGACGCGGGAGTCACGG
CCGTCCCCGCCATCTTCCACCACGCGCCCGAATCCCTCGACGACGCGCCC---CATCACCATG---GCCACC--------
----AGTTCGCCATCCCAGTCGTCGACCTCGCCGGCCTCGCGACACCGTTCGGGAGAGCCTCGGCGGTCGGCGCGGTGAA
GGCGGCCGCCGAGACGGTGGGCTTCTTCCAGGCGGTGAACCACGGTGTGCCGGAGGCAGCTCTGTCGGCGATGCTCGCGG
CGCTGCGGGGCTTCAACGAGGAGACGGCGGATGCCAAGGCGCCGTACCACACCCGGGACGACAGCCGGCGGGTGAGGTAC
CATAGCAACTTCGACCTCTACCAATCGCCGGCAGCCAACTGGCGTGACACGCTGTACATGGAGATGGCTCCGGAGCCGCC
GGCGCCCGAGGAGATCCCGCCGGCGTGCAGGGCCACCGCGCTGGAGTTCGCGGGGCTGGTGCAGGGGC---TGGGGAGCA
CGCTGCTCGGGCTGCTGCCAGAGGCGCTGGGCCTCCGGCAAGGGCACCTGGAGGAACACACACAGTGCCTAGAGGGGCCG
AGCCTCGCCTGCCACTACTACCCGGCGTGCCCGGAGCCGCACCTGACACTGGGCACCACCAAGCACTCCGACCCCGGCTT
CCTCACCGTGCTCCTCCAGGACGCCGTAGGTGGCCTCCAGGTGCTCGTCGAGGAT---GACAAGCAGCAGCCGGCGTGGG
CGGACGTGTCGGCAGTGGCGGGGGCCCTGGTGGTGAACGTCGGCGACTATCTGCAGCTCATGTCCAACGACAGGTTCAAG
AGCGTGGAGCACCGCGTGGTGGCCAAGAGCGCGGGGCCGAGGGTGTCGGTGGCCTGCTTCTTCGGGGCG---------GA
GGGGTCGACGAGGGTGCTTGCGCCGATCGTCGCTGACGG---------CGGCAACGCCCGGTACAGGAACACGACGGTGG
ACGAAATGGCCAGGCA---CTACAGGGCCAAGGGCCTCGACGGCGTCTCCTCACTCCAACACGTCAGGATCTAATGAA--
--TCT-----CACCCAAATGTATTTGTCGTGCTTATGA------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------
>chr3D_865
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------ATAGACGTCGACGTAT
ACACTGCCTGTCAGCAATCATGGAATGTAC-GTACGATCAGTAAAGAGCCACGACTACATTGCTCACTTC----------
-----CAC---AAACTGAATTCAAAGGATCGACTCATCGACACACTGCACAAGCTAGCTCCAATCATCCATGGCCTCCAA
CCAC---CGCCTCGGGGCGCTCAAGGCGTTCGACGACACCAAGGCCGGCGTCAAGGGCCTCGTCGACGCCGGAGCCACGG
CCGTCCCCGCCATCTTCCACCACGCGCCCCAATCCCTCAACGACGCGCCG---CATCATCATG---ACCACC--------
----AGTTCGCCATCCCGGTCATCGACCTTGCCGGCCTCGCGACACCGTCCGGGCGAGCATCGGCGGTCGGTGCCGTGAA
GGCGGCCGCGGAGACGGTGGGCTTCTTCCAGGTGGTGAACCACGGCGTGCCGGAGGAGGCCATGTCGGCGATGCTAGCGG
CGCTGCGGAACTTCATCGAGGGGCCGGTGGAGGCCAAGGCGCCGTACTACACCCGTGACCACGGCCGGCGCGTGAGGTAC
CAGAGCAACTTCGACCTGTTCCAGTCGCCGGCGGCCAACTGGCGCGACACCCTGTTCATGGATATGGCACCGGAGACGCC
GGAGCCCGAGGAAATCCCCCCGGCGTGCAGGGCAATCGCCCCAGAGTTCTCGGGGCTGGTGCAGCGGC---TGGGGAGCA
CGGTGCTCGGGCTTCTGTCGGAGGCGCTGGGCCTCCGGCGAGGGCACCTGGAGGAGAACGCCGCGTGCCTAGAGGGGCTG
AGCCTCGCCTGCCACTACTACCCGGCCTGCCCGGAGCCGCACCTGACGCTGGGCACCACCAAGCACTCCGACCCGAGCTT
CATCACCGTGCTCCTCCAGGACGCCGTCGGCGGCCTCCAGGTGCTCGTCGACGACGACGACAAGCAGAACCCGGCGTGGG
TGGACGTGCCGGCAGTGGCGGGGGCGCTGGTGGTGAACGTGGGCGACTACCTGCAGCTCCTGTCCAACGACAGGTTCAAG
AGCGTGGAGCACCGCGTGGTGGCCAAGAGCGCGGGGCCGAGGGTGTCGGTGGCCTGCTTCTTCCGGACG---------GA
CGGGTCGACGAGGGTGCTCGCGCCGATCGTCGCCGACGG---------CGGCAACGCCCGGTACAGGAACACGACGGTGG
ACGAAATGGTCAGGCA---CTACAGGGCCAAGGGCCTCGACGGCGTCTCCTCACTCCAATACGTCAGGATCTAATGAA--
--TCT-----CACACAAATGTATTTGTTGTGCTTATGATCGGAATTCATGTTCGGGGTTGAATCATATGCTAGTACAGTA
CATCTTAGCAACGCAAGAATAAGATGCAATCTTTGTACTCTTCCCAATGGCGATATTGTGGATTCAGTGTGAAATGCAGA
TAAGATTTAATTCCCTGAGGTGCTAACTTACAGTTACAGGTAGGAAAACATATGCTAACATGAACTGGAAATCACAGAGC
AGGCATCTCCTACAAATTGAAGGG--------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------
>chr3D_911
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------GATCAGTAAAGAGCCACGACTACCTCACTCATTTC----------
-----CACACAAAACTGAATTCAAAGGATCGAC--------AAACTTCAGAAGCTAGCTCCAATCCTCCATGGCCTCCGA
CCAT---CGCTTCGGCGCGCTAAAGGCGTTCGACGATACCAAGGCCGGGGTCAAGGGCCTCGTGGACGCGGGAGTCACGG
CCGTCCCCGTCATCTTCCACCACGCGCCCGAATCCCTCAACGACGCGCCC---CATCACCATG---GCCACC--------
----AGTTCGCCATCCCGGTCATCGACCTCGCCGGCCTCGCGACACCGTCGGAGCGAGCCTCGGCGGTCGGCGCCGTGAA
GGCGGCCGCGGAGACGGTAGGTTTCTTCCAGGTCGTGAACCACGGGGTGCCGGTGGCGGCCATGTCGGCGATGTTTGCGG
TGCTGCGGGGCTTCAACGAGGAGACGGCGGATGCCAAGGCGCCGTACCACACCCGGGACGACGGCCGGCAGGTGAGGTAC
CATAGCAACTTCGACCTGTACCAATCGCCGGCGGCCAACTGGCGTGACACGCTGTACATGGAGATGGCTCCGGAGCCGCC
GGCGCCCGAGGAGATCCCGCCGGCGTGCAGGGCCATCGCGCCGGAGTTCGCGGGGCTGGTGCAGGGGC---TGGGGAGCA
CGCTGCTCGGGCTGCTGTCGGAGGCGCTAGGCCTCCGGCAAGGGCACCTGG----------------------GGGGCTG
AGCCTCGCCTGCCACTACTACCCGGCGTGCCCGGAGCCGCACCTGACACTGGGCACCACCAAGCACTCCGACCCCGGCTT
CCTCACCGTGCTCCTCCAGGACGCCGTAGGTGGCCTCCAGGTGCTCGTCGAGGATGAC---AAGCAGCAGCCGGCGTGGG
TGGACGTGCCGGCAGTGGCGGGGGGCCTGGTGGTGAACGTCGGCGACTATCTGCAGCTCATGTCCAACGACAGGTTCAAG
AGCGTGGAGCACCGCGTGGTGGCCAAGAGCGCGGGGCCGAGGGTGTCGGTGGCCTGCTTCTTCGGGGCG---------GA
GGGGTCGACCAGGGTGCTTGCGCCGATCGTCGCTGACGG---------CGGCAACGCCCGGTACAGGAACACGACGGTGG
ACGAAATGGCCAGGCA---CTACAGGGCCAAGGGCCTCGACGGCGTCTCCTCACTCCAATACGTCAGGATCTAATGAA--
--TCT-----CACACAAATGTA----------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------
>chr7D_974
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------C--------AGACTGCAGAAGCACGCTCCAGTAGTCCATGGCCTCCGA
GCGT---CGCCTCTACGCGCTCAAGGCGTTCGACGACACCAAGGCGGGCGTAAAAGGTCTCGTGGACGCGGGCGTCACCG
CGGTTCCTACCATCTTTCACCACCCGCCGGAATCCCTCGACGACGCACCAACTCATCCCCATG---GCCACC--------
----AGTTCTCCATCCCGGTCATCGACTTAGCCGGCCTCGTGACACCGTCTGGACGGGCTTCGGTTGTGGGCGCGGTGAA
GGCGGCCGCGGAGACGGTGGGCTTCTTCCAGGTGGTGAACCATGGCGTGCCAGAGGCCGCCATGTCCGGGATGCTCGCGG
CGTTGCGGAGCTTCAACGAGGAGCCGGCGGAGGCAAAGCGGCCGTACTACAGCCGGGACCCTGGCCGGCGCGCCAAGTAC
GAGAGCAACTTCGACCTCTTCCAGTCGCGGGCGGCCAGCTGGCGCGACACGCTCTTCATGGAGATGGCCCCGGAGCCGCC
GCCGCCCGAGGAGATCCCTCCGGCGTGCAGGCGCGTGGCGCCGGAGTACGTGGGGCTAGTACAACGGC---TGGGCCGCA
CTCTCTTCGAGCTGCTATCGGAGGGGATGGGACTCCGGCGCGGGTACCTGGAGGAGGAGCAGGAGTGCCTGGATGGGCTG
AGCTTCGCCGGCCACTACTACCCTGCGTGCCCGGAGCCGCACCTGACCCTCGGAGCCGCCAGGCACTCCGACCCCAGCTT
CCTCACGGTGCTCCTCCAGGACGCGGTCGGCGGACTCGAGGTGCTCGTTGACGACGAC---AAGAACCAGCCTGCGTGGG
TGGACGTGCCGACAGCGGCGGGGGCGCTGGTGGTGAACATCGGCGACTACCTGCAGCTCATGTCCAACGACAGGTTCAAG
AGCGTGGAGCACCGCGTGGTGGCCAAGAGCGTGGGGCCGAGAGTCTCGGTAGCCTGCTTCTTCCGGGCG---------GA
CGCGTCGACAAGGGTGCTTGAGCCGATCGTCACGGACGC---------CGGCGGCGCGCGGTACAGGAGCACGACGGTGG
CGGAGTTGGTCCGGCA---CTACAGGGCCAAGGGCCTGGACGGCGTCCCTGCACTCCAACACGTCAGGATCT--------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------
>chr4A_988
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------GCTCCAATAATCCATGGCCTCCGA
CCATGAGCGCCTCCGCGCGCTCAAGGCCTTCGACGGCACCAAGGCCGGCGTCAAGGGCCTCGTCGACGCGGGCGTCACCA
CCATCCCTGCCATCTTCCACCACCCGCCGGACTCCCTGGCCGACGCGCCC---CATCACCATGGTCACCACC--------
----AGTTCGCCATCCCGGTCATCGACCTCGCCGGCCTCGCGAAGCCGTCGGGGCGGGCCTCGGTGGTCGGCGCGGTAAG
GGCGGCCGCGGAGACCGTGGGCTTCTTCCAGGTGACGAACCACGACGTGCCGGAGCCGGCCATGTCCGAGATCCTCGCGG
CGGTCCGGCGCTTCAACGAGGAGCCGGCGGAGGCCAAGGCGCCGTACTACAGCCGGGACACCGAGCGGCGCGCTAGGTAC
CAGTGCAACTTCGACCTGTTTCGGTCGCCGACGGCCTGCTGGCGCGACACGCTCTACATGGAGATGGCCCCGGAGCCGCC
GCCGCCCGAGCAGATCCCGCCGGCGTGCCGGGCCATCGTGCCGGAGTACGCTGGGCTGGTGCAGCGGC---TGGGGCGGA
CCCTCTTCGGGCTGCTGTCGGAGGCGATGGGCCTCCGGCGCGGGTACCTGGAGGAGGAGGCCGGGTGCCTGGAGGGGCTG
AGCGTGGGCTGCCACTACTACCCGGCGTGCCCGGAGCCGCACCGGACGCTGGGCAACGCGAGGCACTCCGACCCCAGCTT
CCTCACCGTGCTCCTCCAGGACGCCGTCGGCGGACTCCAGGTGCTGGTGGACGTCGACGA---GCGGCGGCCGGCGTGGG
TGGACGTGCCGGCGGAGGCGTGTGCGCTGGTGGTGAACGTCGGTGACTACCTGCAGATCCTGTCCAACGACCGGTTCAGG
AGCGTGGAGCACCGCGTGGTGGCCAACACCGCCGGTCCCCGGGTCTCCGTCGCATGCTTCTTCCG---------CGCCGA
CGCCTCGACGAGGGTGCTCGCTCCGATCGTCGCCGGCGGTGATGGCGACGGCCGCGCGAGGTACAGGAGCACGACGGTGC
CGGAGATGCTCCGGCA---CTACGGCGCCAAGGGCCTGGACGGCGTCTCTGCGCTCCAGCGCGTCAGGATCT--------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------
>chr4A_1008
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------------------CCGA
CGAC---CGCCGCCGAGCGCTCCAGGCGTTCGACGACACCAAGGCGGGCGTCAAGGGCCTGGTCGACGCGGGCGTCACCA
CCGTCCCGGCCATCTTTCAC-ACCCGCCGGACTCCCTCCCCCTCGACGCG---------CCTCCTCAGCCACACCACGAG
CGCAGTTTCACCATCCCGGTCATCGACCTCGCGGGCCTCGGGACGCCGTCGGGGCGAGCCTCCGTGGTCGGCGCGGTGAA
GACGGCAGCGGAGACGGTGGGCTTCTTCCAGGTGGTGAACCACGGCGTGCCCGAGGCGGCCATGTCGGAGATGCTCGCGG
CGGTGCGGCGCTTCAACGAGGAGCCCTCGGAGGCTAGGGCGCCGTACTACAGCCGGGACCACGGCCGGCGCGTCAGGTAC
ACGAGCAACTTCGACCTGTTCCAATCGCCGGCCGCCAACTGGCGCGACAGCGTGTACATCGACATGACGCCAGACCCGCC
GGCGCCCGAGGAGATCCCGCCGACCCTCCGGAGCGTCGTGCCGGAGTATGAGCGGCTGGCGCAGCAGC---TGTACCGCG
AGCTGCTAGAACTGCTGTCGGAGGCCCTGGGACTGCGCCGCGGGCACCTGAAGAAGGACGCCGGGTGCCTCGACGGGCTC
AACCTCGCCGCCCACTACTACCCGGCGTGCCCGGAGCCGCACCTGACCATGGGCACCACCCGGCACTCCGACCCCAGCTT
CCTCACCGTGCTGCTCCAGGACGCCGTCGGCGGCCTCCAGGTGCTCGTGGAGGATGACGGCGGCTCCT---CTGAGTGGG
TGGAGGTGCCGGCGGTGCCGGGGGCACTGGTGGTGAACATCGGCGACTACCTGCAGCTCGTGTCCAACGACATGTTCAAG
AGTTTGGAGCACCGCGTGGTGGCCAACGGCGTGGGACCCCGCGTGTCGGTGGCATGCTTCTTCAGGACGCACGGCGCCGC
CGCGTCCACGAGGGTGCTGCAGCCGATCGTCGCCGGCGG---------AGACCGCGCGAGGTACAAGAGCGCGACCGTGG
AGGAGCTGCTCCGGCA---CTACAGGGCCAAGGGCCTGGACGGCACCTCCGCGTTGGACCACTTCAGGCTC---------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------
>chr2D_1028
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------CTCAGGGCGTTCGACGAGACGAGGGCGGGCGTCAAGGGCCTGGTCGACGCCGGCGTCACCG
CCGTCCCGTCCATCTTCCACCACCCGCCGGAGACCCTGCCCCACGGCGCG---------CATCGCCCTCATC--------
----GCTTCACCGTGCCGGTCATCAACCTGTCACCCGCCCTGCAGGGAACCGCGCGGGCCGCGGCGGTCGCGGAGGTGAG
GGCGGCCGCGGAGACGTTCGGCTTCTTCCAGGTGGTGGGCCACGGCGTGCCGGAGGCGGCCACGTCGGCGATGCTCGCGG
CGGTGCGGGGCTTCATCGAGGAGCCCGTGGAGGCCAAGGCGCCGTACTACACGCGGGACACCGGCCGGCGCGTGAGATAC
CAGAGCAACCTCGACCTGTTCCAGTCGACGGCGGCCAACTGGCGCGACACGCTCTTCGTGGAGATGCTGCCGGAGCCGCC
GGCGCCCGAGGAGCTCCCGGCGGCGTGCAGGCGCGTCGCGCCGGAGTACGCGCGGCTGGTGCAGCGGCGGCTGGGCCGCG
CGCTGCTGGGGCTGCTGTCGGAGGCGCTGGGCCTCCGCCCCGGCCACCTGGAGGAGGAGCACGGGTGCCTGGAGGGGCTC
AGCCTCGCCTGCCACTACTACCCGGCCTGCCCGGAGCCGCACCTCACCCTCGGCACCCCGCGGCACACCGACGCCAGCTT
CCTCACCGTGCTCCTCCAGGACGCCGTCGGCGGCCTCCAGGTGCTCGTCGACCTCGAGGGCGC------CCCGGCGTGGG
TGGACGTGCCGCCGGTGGCGGGGGCGCTGGTGGTGAACGTCGGCGACTTCCTGCAGCTCATGTCCAACGACAGGTTCAAG
AGCGTGGAGCACCGCGTGGTGTCCAACGCCGTGGGGCCACGGGTCTCGGTGGCGTGCTTCTTCCGGACGGACCGCGCCGC
CGCGCCAACGACGGTGCTGGCGCCGATCGTCGCCGACGG---------CGACGAGCCGCGGTACAGGAGCACGACGGTGG
AGGAGGTGGTCCGGCAGTACTACAAGGTCAAGGGCCTCGCCGGCACCTCTGCACTCCAGCACTTCAGGCTCT--------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----S----S-------
-----------S-------S-----SS---------------------S----------------------S--------
-------------------------------S------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------S---------------------
------------------------------S--------S--------------------S-------------------
--------------------------------------------------------------------------------
-----------------------------------S--------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------S--------------------------------------
------------------------------------S--S--S------S----------S-------------------
-S--------------------------------------------------S-------S-------------------
-----S-------SS-----------------------------------------------------------------
-----S------------------------SS-------------------------S----------------------
---------S---------------------------S------------------------------------SS--SS
SS--------------------------------------SS----S---S--S--S-----S-S--------SS-----
----SS--S--S--S-------------S---S-S--------SS-SS-SS--SS---------SS-SSS----------
-S-------SS-SSSSSSS-SSSSS-----------------S---------SSS-----S-----S-S-----SSSSSS
SS-SS-------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSS
>forward_540
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------CAATGCTTCGTTGCCCACTC--------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------
>reverse_2438
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------AGGCGGACGTTTGGTCTATG-----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------
