>input_sequence_73608
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-----------------------------------------ATGAGCAAGAGAGGCAGGGATGTGTGGGACATGGAGCTT
GGAGGCCTGGACACGGCCCGCCTGCTCATGCTCCTCGCGCAGCA---------GCACCA------GCAGCATCAACACCA
GCGCGCCGTCGCCGGGGCGGCGCAGGCGATGGGCGGCGGGCGCGTGTTCGAGTGCAAGACGTGCAACCGGCAGTTCCCCA
CGTTCCAGGCGCTCGGAGGGCACCGCGCCAGCCACAAGCGACCCAGGCTTCAACAGCACCCGCAGAAGCCGCACGCGAT-
--CGACAGCATCGACGACGGCGCGGCGCTCTGCCTCGGCCGCCGGGC---------GCCCCAGGCGCCGCCGCTGCCGGC
CAAGCCGAGGGCGCACGAGTGCCCCGTCTGCGGGCTCGAGTTCGCCGTCGGCCAGGCGCTGGGCGGGCACATGCGCCGGC
ACCGCGTCGAGGCCGAGGCCGCCA------CCAACGCCCCTAGCGGCAAGGCG---GCGGAGCCCGAGATGGTGGTCGCC
TCGTGCGACGCCGGCGGGATCTGCCTGGACCTGAAC--------CTGACGCCGTCGGAGAACTGCACCAAGTGCAGGAGC
GCGGCGGGGCTCAGCGCCGCTGCCAGGCAGGGCGTACACAAGGCGCTCGCCATGTTAGACTGCTCCCTCTGA--------
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>chr3B_1_TraesCS3B01G389000
CATTGGCATACCCTCGGAAAAAAAAACAAAAAGGACTTTTTAGGGACTAGGGACTTTTTAGTTGGGATTAGAAAAAGTTT
TAGGACTTATGAACCAAACAGGGCCTAAGCCAAATTGTTTGACGAGACTGCTAGTAGTGGTATGAATTTCTAGATTCCAC
TGAGGCAACAACGGAGCTCG----GTTTTGAACAGGGACGTCGCGCCGCTCGTTCTAGATGATCTGGATGGAGCTATTCG
TGTCGATCTCCAAATCTCCGTTCGCCCGGT-----CAATAAATTAGGTGACGGCAGCAACAAAACCACATACAC---CAA
CCGGAGAGTGTCTGAAACACTGAAACCCGTGCAGAGGCCCGGTCGAGATCGCCGCCGGCGCCGAAGTGTATAACACGCAC
CATGATGAATGAATGAATCAAAGTCAGAACGCCACGC-------------------------------------------
----------------------------------------------------------------------------CACG
CACACGCTACGG-ACGTCGCTCGCGACGCCGCACCATGGTCCATCGGGCAGGTCCGC----AGGTGTCTGCTGTTTACGA
TTCTGTGCTTTGCTTAGCCGGGGCGCG-----------CAGCCGCCGGCCAGCCAGCCGGCCGGTCTAGAAGGAAGAGTC
AGCTCGATCGCCTGAACACACATGTTGACT--AGACTAGATACTGC---GATCTACCT-AGTCA--------CATGACAA
GATTGAACGCAGATTCTGTACGGGT----CGTAC---TGTAGACTCTAGTAGTAG---------ACTAGTAACTAATCTC
TCTCACC------AAGCGGTCAAACTCCAG----GAAAAGTACATGCAGACACGTCCACGTCTAGAAGCCAACA------
-----AACAC------------------------------------TTGC-GAGCCGCTAGTAGT---AG------TCGT
GCGTGCGCGCCCG-TTTCCTACGTGCACCAAACCCC----AACCTCAAGTAGCG-CCCCACTATATA---A--GAGGCAT
CCACCATACGG-----GCCAGAGCCACATATGCATTACACAGTGCAGGCCAAGG--------------------------
----TGGTACGAACGCACGCAAAGTACACTGCGACTTTGGACTACCTACCCTAACCGGCCGGCGAGAGATCAAGT-----
-CCAG-------AC-------TCA--------AG---AGCCATGAGCAAGAGAGGCAGGGATGTGTGGGACATGGAGCTT
GGAGGCCTGGACACGGCCCGCCTGCTCATGCTCCTCGCGCAGCA---------GCACCA------GCAGCATCAACACCA
GCGCGCCGTCGCCGGGGCGGCGCAGGCGATGGGCGGCGGGCGCGTGTTCGAGTGCAAGACGTGCAACCGGCAGTTCCCCA
CGTTCCAGGCGCTCGGAGGGCACCGCGCCAGCCACAAGCGACCCAGGCTTCAACAGCACCCGCAGAAGCCGCACGCGAT-
--CGACAGCATCGACGACGGCGCGGCGCTCTGCCTCGGCCGCCGGGC---------GCCCCAGGCGCCGCCGCTGCCGGC
CAAGCCGAGGGCGCACGAGTGCCCCGTCTGCGGGCTCGAGTTCGCCGTCGGCCAGGCGCTGGGCGGGCACATGCGCCGGC
ACCGCGTCGAGGCCGAGGCCGCCA------CCAACGCCCCTAGCGGCAAGGCG---GCGGAGCCCGAGATGGTGGTCGCC
TCGTGCGACGCCGGCGGGATCTGCCTGGACCTGAAC--------CTGACGCCGTCGGAGAACTGCACCAAGTGCAGGAGC
GCGGCGGGGCTCAGCGCCGCTGCCAGGCAGGGCGTACACAAGGCGCTCGCCATGTTAGACTGCTCCCTCTGATCATTCCG
ATCGCTGGACCACTCCAT------------GCATGGTGGTGGCTGCTGATTGCTTTCCTGCTAAACTGTTCTATTGGTTT
GTTTA-TTTATAC-TTTACTTTACACCTTTCACATTTTTTT--TGTAAATTTTTAGATGTAAATGTTCATAGGCTGGTGC
GCCGGCGTAGTTCTGAAACAGATCAAACATGAACTTTTGCATTTCCTTGCTGTAAATAATACCTCATGAAATTTACCACT
TATGGTCGCCCTTTTGAAGCATTGCATGTTGAAAACGTGTAATAATG------TACTACGCTGTTCATTTCGAAAAGTAA
G-------------------------------------------------------------------------------
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-----------------------------TCAATTTTCATAAAATTTATGTTCCTACTAATGAAGGCTAACATTTGTTTC
AGCAAGTCAATTTGCATAAAGTTTCTGCTCCTACTAATGAAGGCTAAC--------------------------------
-------------------------ATTTTCTTCAGAACACAAAGTCAAATGACAGACATTTCAATTTATTTCTTCGC--
AAAAAAAAAGACATTTCAAAGCGGGGTACAGTCA---------------------AAAAAATAAACACGAGCACCGTCAA
CCCATTCTGCTTGCAGCAGCATGACAACATGTAACTTCTGTATTGCATTCTTAACAGATGAA---TGAAAACTGAACGCA
AGGAAATAAACATTCAACAGTTCAAAGACGTTTTCTAACTTCTCACCGGCACATCTAAACAAGTATAAACATATAGTAGA
ACAAAACAAGGTCTAAAGCAGTCCATGGAATCATTCGAGCACACATAACATGTTTTCATCATTCAGGAATTCAGGTGGTC
ATTTTTTCATCGACGATCAAAGACAAACTCTACCCGCCATTTACAAGGCACGAACTGAACGAAGTTGGCATAGTCTAACC
CAATACACATGGTACTATCTCCGTCCCATAATATAAGATGTTATTACAACCAATATGTGACAGAGT-AGTAAAATATTAT
TGGCATGTTTGCAATTCATGCAGTTTGCATGTTTATGGAAAA-GGT-GCTCAAATTAACTTCCTCGTAAATGATTTTGCT
TGCTCAAA
>chr3D_123
--------------------------------------------------------------------------------
------------------------------------------CGAGCCTGCTAGTAACAGTATGAATTTCTAGATTCCAC
GGAGGCAACAAAGGGAGCTCGATCGTTTTGAACAGGGACGTCGCGCCGCTCGTTCTAGATGATTGGAAACGAGCTATTCG
TGTAGATCTCGAACTCTCCGTTCGCCCGGTATAGTCAATAAATGTCGTGACGGCAGCAACAAAACCACATACAC---CAA
CCGGAGAGTGTGTGAAACACTGAAACCCGTGCAGAGGCTGGGTCGAGATCGCTGCCAGCGCGGAAGTAA--AAGAGGCAA
TAGCACACAAGTCCTAGAACTTGCACAATTTAGACCCAAATTTCAAATTGTCACATGCAGTTCAAGTTCTAGGGGTGTAG
TTTTGCACACTTTAAACTAAAACATCACATTTCGTGCAAATTTTAGGACTTGTGGTGCTATTACCTTCAAGAAAAACACG
CACACGATACGG-ACGTCCGCCACGACGCCGCACCATGGTCCATCGGGCACGTCCGC----AGGTGTCTGCTGTTTATGA
TTCTGTGGTT-GCTTAGCCGGGTCGCG-----------CAGCCGCCGGCCAGCCAGCCGGCCGCTCTA----GAAGAGTC
AGCTCGATCGCCTGAACACACATGTTGACTTTAGACTAGATACTGC---GATCTACCT-AGTCA--------CATGACAA
GATTGAACGCAGATTCAGTACGGGT----CGTAC---TGTAGACTGTAGTAGTAG------ACTAGTAGTAACAAATCTC
TCCCACAGC----GCGCGGTCAAACAGTCT----GAAAAGTACATGCAGACACGTCCACGTCTAGAAGCCAACA------
-----AACAC------------------------------------TTGC-GAGCCACTAGTAGT---AG------TCGT
GCGTGCGCGCCCG-TTTCCTACGTGCACCAAACCCC----AACCTCAGGTTGCG-CA-CACTATATA---A--GAGGCAT
CCACCATACGG-----GGCAGAGCCACATATGCATTACACAGTGCAGGCCAAGG--------------------------
----TGATACGAACGCACGCAAAGTACACTGCGACTTTCGACTACCTACCCTAACCGGCCGGCGAGAGATCAAGT-----
-CCAG-------AC-------TCGAGA-----------GCCATGAGCAAGAGAGGCAGGGATGTGTGGGACATGGAGCTT
GGAGGCCTGGACACGGCTCGCCTGCTCATGCTCCTCGCGCAGCA---------GCACCA------GCA---------CCA
GCGCGCCGTCGCCGGGGCGGCGCAGGCGATGGGCGGCGGCCGCGTGTTCGAGTGCAAGACGTGCAACCGGCAGTTCCCCA
CGTTCCAGGCGCTCGGCGGACACCGCGCCAGCCACAAGCGCCCCAGGCTCCACCA---TCCGCAGCCGCAGCACGCGACC
GGCAGCGTCGACGACGACGACGCGGCGCTCCGCCTCGGCCGCCAGGC---------GCC---------GCCGCAGCCGGC
CAGGCCGAGGGCGCACGAGTGCCCCGTCTGCGGGCTCGAGTTCGCCGTCGGCCAGGCGCTGGGCGGGCACATGCGCCGGC
ACCGCGTCGAGGCCGAGGCGGCCA------CCAACGCGCCGAGCAGCAAGGCC---GCGGCGCCCGAGACGGCGCTGGCG
TCGTGCGACGCCGGCGGGATCTGTCTGGACCTGAAC--------CTGACGCCGTCGGAGAACTGCGCCAAGTGCAGATGC
GCGGCGGGGCTCGGCGCCGCTGCCGGGCAGGGTGTGCATAAGGCGCTCGCCATGTTAGACTGCTCCCTCTGATCATTCAG
ATTGCTCGTGCCCCCTGATGTTCCTCGCGCGCATGGCGGTGGCTGCTGATTGCTTTCCTGCTAAACTGTTCTATTGGTTT
GTTTATTTTATAC-TTTATTTTACACCTTTCACA---TTTTTTTGTAATTTTTTAGATGTAAATGTTCATAGGCTGGTAC
GACGGCGTAGTTCTGAAACAGATCAAACATGAACTTTTGCATTTCCTTGCTGTAAATAATACTTCATGAAATTTACCACT
TATGGTCGCCCTTTTGAATGATTACATGTTGAAAAAGTGTAACAATGTTTGCTTACTACGCTGTTCATTTCGAAAAGTAA
G-------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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-----------------------------TCGATTTTCATAAAGTTTCTGTTCCTACTAATGAAGGCTAACATTTGTTTC
AGCAAGTCAATTTGCATAAAGCTTCTGTTCCTACTAATGAAGGCTAACATTTGTTTCGGCAAGTCAATATTCATAAAGTT
TCTGTTCCTGCCAATGAAGGCTAGCATTTTCTTCAGAACAGAAAGTCAAATGACAGACATTTCAATTTTTTTTCATCACA
AAAAAAAAAGACATTTCAAAGCCGGTTACGTCAAATAAATAAACACGCCCCCCGCAAAAAAAAAACACGAGCACAGTCAA
CCCATTCTGCTTGCAGCAGCATGACAACATGGAACTTTTGTATTGCATTCTTAATAGATAAAGGCTGGAAACTGAAAGCA
AGGGAACAAACATTCAACAGTTCAAAGACGCTTTCTAACTTTTCACCGGCACATCTAAACAAATAGTATAAACATATAGA
ACAAAACAAGGTCTACAGCAGTCCATGGAAACATTCAAGCACACATAACATGTGTCCATCATTCGGGATTTCAGGTGGTC
ATTTTTTCATTTACGATCGAAGACAAACTCTACCCACCATTTACAAGGCACGAAACTAACAAAGTTGGCATAGCCTATCG
CAGTATGCATCGTACTCGCTTCGTCCCATAATATAAGATGTTACTACAACCAATATATGACGGAGGAAGTACAATATTAC
TGGAATATTTGCAATTCATGCAGTTTGCATGTTTGTGTTAAAGGGT-GCTCAAATTAACTTCCTCGGGAATGATTTTGCT
TGCTCAAA
>chr3A_123
--------------------------------------------------------------------------------
------------------------------------------CGAGACTGCTAGTAGTGGTATGAATTTTTAGATTCCAC
GGAGGCAACAACGGAGCCT-----GTTTTGAACAGGGACGTCGCGCCGCCCGTTCTAGATGATTTGGATGGAGGTATTCG
TGTCGATCGCCAACTCTCCGTTCGCCGGTCG-AGCCAATAAATTTGGTGACGGCAGCAACAAAACCACGTAGTACGTCAA
CCGGAGAGTGTGTGAAAGACTGAAACCCATGCAGAGGCTGGGTCGAGATCGCCGCCCGCGCGGAAGTAA--AACACGCAC
GGCACGG------TGAACCAGAGGCACCCCTGTTCAG-------------------------------------------
----------------------------------------------------------------------------AACG
AACACGCTACGCTACGTCGGTCGCGACGCCGCACCATGG-CCATCGGGCACGTCCGC----AGGTGTCTGCTGTTTACGA
TTCTGTGCTT-GCTTAGCCGGGGCGTG-----------CAGCC-----------AGCCGGCCGGTCTA----GAAGAGTC
AGCTCGATCGCCTGAACACACATGTTGACT--AGACTAGATACTGC---GATCTACCTTAGTCA--------CATGACAA
GATTGAACGCAGATTCAGTACGGGT----CGTAC---TGTAGACTCTAGTAG------------ACCAGTAACTAGTCTC
CTTCAGAGA----GCGCGGTCAAACTTCCCGATCGAAAAGTAGACGCAGACACGTCCATGTCTGGAAGCCAACA------
-----AACACATGA--------------------------------------AGCCACTAGTAGT---AG------TCGT
GCGTGCGCGCCCG-TTTCCTACGTGCACCAAACCCC----AACCTCAAGCTGCG-CA-CACTATATA---A--GAGGCAT
CCACCATACGG-----GCCAGACCCACATATGCATTACACAGTGCAGGCCAAGG--------------------------
----TGGTACGAACGCACGCAAAGTACACTGCGACTTTCGACTACCTACCCTAACCGGCCGGCGAGAGATCAAGT-----
-CCAG-------GC-------TCGAGAAGTCGAG---AGCCATGAGCAAGAGAGGCAGGGATGTGTGGGACATGGAGCTG
GGCAGCCTGGACACGGCCCGCCTGCTCATGCTCCTCGCGCAGCAGCACCAGCAGCACCA------GCA---------CCA
GCGCGCCGTCGCCGGGGCGGCGCAGGCGATGGGCGGCGGCCGCGTGTTCGAGTGCAAGACGTGCAACCGGCAGTTCCCCA
CGTTCCAGGCGCTCGGAGGGCACCGCGCCAGCCACAAGCGCCCCAGGCTGCACCA---TCCGCAGCCGCAGCTCGCTCT-
--CAGCAGCGTCGACAACGACGCGGCGCTCCGCCTCGGCCGCCAGGC---------GCC---------GCCGCAGCCGGC
CAGGCCGAGGGCGCACGAGTGCCCCGTCTGCGGGCTCGAGTTCGCCGTCGGCCAGGCGCTGGGCGGGCACATGCGCCGGC
ACCGCGTCGAGGCCGAGGCCGCCA------CCAACGCGCCGAGCAGCAAGGCC---GCGGCGCCCGAGACGGCGCTGGCG
TCGTGCGACGCCGGCGGGATCTGCCTGGACCTGAAC--------CTGACGCCGTCGGAGAACTGCGCCAAGTGCAGGAGC
GCGGCGGGGCTCGGCGCCGCTGCCGGGCAGGGCGTACACAAGGCGCTCGCCATGTTAGACTGCTTCCTCTGATCATTCAG
ATTGCTCGTGCCCCCTGATGTTCCTCGC----ATGGCGGTGGCTGCTGATTGCTTTCCTGCTAAACTGTTCTATTGG---
-TTTATTTTATACTTTTATTTTATATCTGTTAGATTTTTTTGTTGTAAATTTTTAGATGTAAATGTTCATAGGCTGGCAC
GCCGGCGTAGTTCTGAAACGGATCAAACATGAACTTTTGCATTTCCTTGCTGTAAATAATACTTCATGAAATTTACCACT
TATTGTCGCCCTTTTGAATCATTACATGTTGAGAACGTGTAATAATGTTTGCTTACTAGGCTGTTCATTTCGAAAAGTAA
GAGGGTGCTTGGATCCAAAAGACTTATTTTAGTCTTATTAAAAATAGTCTCTTTAAGAGGCCAAAGTTTCAAGCACCCCT
GACTAAAGAGGGGCTAAAACTAGTCTTAAGACTAAAAAAATTTAGTCTGGGGTACCCCTACTAGAATGTGAATTAGTCCT
CTCTCTTCTCATTTAAGTTCTCTCCTTTAACACAGGCAAGTTCTGGATTGGAGGGTTTGGACGATAATAAATGCTCATTA
ACTTGATTTTAGTCTTTTTAGTATTTGAATCCAAGCATGAATGAGGCTAGCAAGTTTTAGTCCCACTACTTTTAGTCATG
GGACTAAAACGTATCAAGCACCCTCTAAGTCGATTTTCATAAAGTTTTTGTTCCTACTAATGAAGGCTAACATTTGTTTC
AGCAAGTCAATTT---------------------------------------------------------TCATAAAGTT
TCTGTTCCTACTGATGAAGGCTAGCATTTTCTTCAGAACACAAAGTCAAATGACAGACATTTCAATTTTTATTTCATCAC
-AAAAAAAAGACATTTCAAAGCCAATTACGTCAAATAAATAAACACGTCCCCCGCAAAAAAAACAT--GAGCACAGTCAA
CCCATTCTGCTTGCAGCAGCATGACAACATGGAACTTTTGTATTGCATTCCTAATAGATAAA---TGAAAACTGGACGCA
AGGAAACAAACATTCAACAGTTCAAAGACGCTTTCTAACTTTTCACCGGCACATCTAAACAAGTAGTATAAATATATAGA
ACAAAACAAGGTCTACAGCAGTCCATGGAAACATTCAAGCACACACAACATATGTTCATCATTCAGGATTTCAGGTGGTC
ATTTTTTCATTGACGATCAAAGACAAATTCTACCGACCATTTACAAGGCACGAAACTAACAAAGTTGGCATAGCCTAACG
CAGTATGCATGGTACTCGCTCCATCCCGTAATATAAGATGTTATTA-AACCAATATGTGACGGAGGGAGTACAATATTAC
TGGAATATTTGCAATTCATGCAGTTTGCATGTTTGTAGAAAA-GGGAGCTCGAATTAACTTCCTCAGGAATGATTTTGCT
TGCTCAAA
>chr3D_449
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--------------------TCGTGACGCCGCGCCACGGTCCATCGGGCAGGTCCGCATGCAGGTGTCTGCTGTTTACGA
TTCTGTGGTT-GCTTAGCCGGGGCGCGCAGCCGCCGGCCAGCC-----------GGCCGGCCGGTCTA----GAAGAGTC
AGCTCGATCGCCTGAACACACATGTTGACT--AGACTAGATACTGC---GATCTACCT-AGTCA--------CATGACAA
GATTGAACGCAGATTCGGTACGGGT----CGTAC---TGTAGACTCTAGTAG------------ACCAGTAACTAATCTC
CCTCAGGGC----GCGCGGTCAAACTTCCCGATCGAAAAGTAGACGCACACACGTCCACGTCTGGAAGCCAACA------
-----AACAC------------------------------------TCGC-GATCCACTAGTGGT---AGTCGTGCTCGT
GCGTGCGCGCCCG-TTTCCTACGTGCACCAAACCCCGGAGAACCTCAAGCTGCGCCA-CACTATATA---A--GAGGCAT
CGACCATACGG-----CCCAGAGCCACATATCCATTACACAGTGCAGGCCAAGG--------------------------
----TGGTACGAACGCACGCTAAGTACGCTGCGACTTTCGGCTACCAA-CCTAACCGGCCGGCGAGAGATCAAGT-----
-CCAG-------AC-------TCGAGA----GAG---AGCCATGAGCAAGAGAGGCAGGGATGTGTGGGACATGGAGCTG
GGCAGCCTGGACACGGCCCGCCTGCTCATGCTCCTCGCGCAGCA---------GCACCA------GCA---------CCA
GCGCGCCGTCGCCGGGGCGGCGCAGGCGATGGGCGGCGACCGCGTGTTCGAGTGCAAGACGTGCAACCGGCAGTTCCCGA
CGTTCCAGGCGCTCGGAGGGCACCGCGCCAGCCACAAACGCCCCAGGCTCCACCA---TCCGCAGCCGCAGCACGCGACC
G---GCAGCGTCGACGACGGCGCGGCGCTCTGCCTCGGCCGCCGGGC---------GCC---------GCCGCAGGCGGC
CAGGCCGAGGGCGCACGAGTGCCCCGTCTGCGGGCTCGAGTTCGCCGTCGGGCAGGCGCTGGGTGGGCACTTGCGCCGGC
ACCGTGTCGAGGCCGAGGCCGC------GGCCAGAGCGCCGAGCTGCGAGGCG---GCGGCGACCAAGACGGAGTTGGCG
TCGTGCGACGCCGGCGGGATCTGCCTGG-CCTGAAC--------CTGGCGCCTTCGGAGAACTGCGCCAAGTGTAGGAGC
GTGGCGGGGCTCGGCGCTGCTGCCGGGGAGGGTGT---------------------------------------------
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>chr3D_549
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-------------------------------------------------------GCCGGCCGCTCTA----GAAGAGTC
AGC----TCGCCTGAACACACATGTTGACC--AGACTAGATACTGC---TATCTAGAC---TCCCATGATGCCATGACAA
GATTGAACGCAGATCC-GTACGGGT----GGTATACTT----ACTGTAGTAGACTGGTAGTACTACGAGTAACTAATCTC
TGGCACC------GCGCGGTGAAACTTCCCCATCGAAAAGTAGATGCACACACGTCCACGTCTAGAAGCCAGCC------
-----AACAA--------------------------------ACACTTGC-GAGCCAC---TAGTACTAGTCGTGC--GT
GCGCGCTCATTTG-TTTCCTACGTCCACCAGACCCC----AACTCAAGTTGCGCACA---CTGTATA---A--GAGCCAC
CAGACATACGG-----GCCAGAGCCACATATGCATTACACAGTGCAGCCGAGAGCCATACACGATCCAGTAGCACAGC--
----------------GCGACT-------------TTTTGATCGCGGG-----ACTAGCCTGCCAGCGATCGAGT-----
-CTCAAGTCTCAAC-------TCGAGA----GACAT----CATGAGCAAGAGGGGCAGGGATGTGTGGGACATGGAGCTG
GGCAGCCTTGACACGGCCCGCGTGCTCATGCTCCTCGCGCAGCAGCACC------AGCA------CCA---------CCA
CCGCGGCGTCGCCGGGGCAGCGCAGGCGATGGGCGGCGGCCGCGTGTTCGAGTGCAAGACGTGCAACCGGCAGTTCCCCA
CGTTCCAGGCGCTCGGGGGGCACCGCGCCAGCCACAAGCGCCCCAAGCTGCAGCA---CCCGCAGCTGCACGCGGTT---
G---GCAACGCCGACGACGGCGCGGCGCTCTGCCTCGGCCGCCAGATGCCCCCGGT------------------GCCGCC
AAGGCCGAGGGTGCACGTGTGCCCCGTCTGCGGGCTCCAGTTCGCCGTCGGCCAGGCGCTGGGTGGGCACATGCGCCGGC
ACCGTGTTGAGGCCGAGGCCGC----------------------------------------------------------
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>chr3B_566
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------------------------------------------------------------------------GAAGAGTC
AGCTCGTTCGAAC--ACACACATGTTGACT--AGACTAGCTACTGCCACTAGCTAGAC---TCA--------CATGACGA
AATTGAACGTAGATCG-GGACTACGTGTACGTAC---CATAGACTCC---------------------------------
-CACACCGCGCGGGAGCGGTCAAACAGCCA----GAAAAGTACATGCACACACGTCCACGTCTAGAAGCCAGCCGTACGT
ACTCCAACCA--------------------------------AGACTTGG-TGGGCAC---TAGT---GG------TCGT
GCGTGCGTGCCCCATTTCGTACGTGCACCAAACCCC----AAGTAGG--------CA---CTATATAT--A--GAGGCAT
CGGCCAGACAAGACAACCCAGAGCCACATATGCATTACACAGTGCAGCAATCAGCCGAT----------TAGCCGAAAGT
GATTTTACACGATCGAGT----AGCTCGCCGCGACTTTTGGTCGGGGG-----ACTAGCCCGCCAGCGATCGAGT-----
-CCAG-------AGCCGACTGTCGAGA----GCCATCGGCCATGAGCAAGAGAGGCAGGGGCGTGTGGGACATGGAGCTG
GGCAGCCTCGACACGACCCGCCTGCTAATGCTCCTCGCCCAGCAGCACCAGCACCAGCA------CCA---------CCA
CCGCGGCGTCGCCGAGGCGGCGCAGGCGATGACCGGCGGCCGCGTGTTCCAGTGCAAGACGTGCAACCGGCAGTTCCCCA
CGTTCCAGGCGCTCGGGGGACACCGCGCCAGCCACAAGCGCCCCAGGCTCCACCA---CCCACCCCCGCAGCACGCGCT-
--CGTCGGCGTCGACGACGACGCAGCGCTCTGCCTCGGCCGCCGGGCGCCCCAGGCGCC---------GCCGCAGCCGGC
CAGGCCGAGGGTGCACGAGTGCCCCATCTGCGGGCTCGAGTTCGCCGTCGGCCAGGCGTTGGGTGGGCACATGCGCCGGC
ACCGCGTCGAAGCCGAGGCCGAGGCCGGGGCCAACGCCCCGAGCAGCAAGGCGGCGGCGGCGACCGAGATGGTGGTGGCT
TCGTGCGACGACGCCGGGATCTGCCTGGACCTGAAC--------CTGACGCCTTCGGAGAACTGCGCCAAATGCAAGAGC
GCGGCGGTGCTCCGTGCCGCTACTGGGCAGGGTGTACATAAGGCGCT---------------------------------
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>chr3A_566
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------------------------------------------------------------------------GAAGAGTC
AGC----TCGCCTGAACACACATGTTGACT--AGACTAGATACTGC---TACCTAGAC---TCA--------CATGACAA
GATTGAACGCAGATCC-GTACGGGT----GGTAC---T----ACTGTAGTAGACT------AGTACCGGTAACTAATCTC
TCACACCGC----GC-CGGTCAAACTTCCCCATCGAAAAGTTGATGCACACACGTCCACGTCTAGAACCCAGCT------
-----AACAAAAGATTTCAAAAAAAAAAAACCCAGCTAACAAACACTTGC-GAG--------------------------
---------------------------CCAAACCCCGGCCCAACCCGGG-----ACA---CACTATA---A--GAGCCAC
CAGCCATACGG-----GCCAGAGCCACATATGCATTACACAGTGCAGCCGAT---AGAT----------TAGCCGAGAGC
GAT---ACACGACCGAGCGACT-------------TTTTGATCGGGGG-----ACTAGCCTGCCAGCGATCGAGT-----
-CTCAAGTCTCAAC-------TCGAGA----GACATCAGCCATGAGCAAGAGAGGCAGGGATGTGTGGGACATGGAGCTT
GGAGGCCTGGACACGGCCCGCCTGCTCATGCTCCTCGCGCAGCAGCACCAGCAGCACCA------CCA---------CCA
GCGCGCCGTCGCCGGGGCGGCGCAGGCCATGGGCGGCGGCCGCGTGTTCGAGTGCAAGACGTGCAACCGGCAGTTTCCCA
CGTTCCAGGCGCTCGGGGGCCACCGCGCCAGCCACAAGCGCCCGAAGCTGCAC------------------GCGGTT---
G---GCAACTCCGACGACGGCGCGGCGCTCTGCCTCGGCCGCCAGATGCCCTCGGTGCC---------GCCGCAGCCGCC
AAGGCCGAGGGTGCACGAGTGCCCCGTCTGCGGCCTCCAGTTCGCCGTCGGCCAGGCGCTGGGTGGGCACATGCGCCGGC
ACCGTGTCGAGGCCGAGACCGCA------GCCAGAGCGCCGAGCTGCGAGGCG---GCGGCGACCAACACGGAGTTGGCG
TCGTGCGACGCCGGCGGGATCTGCCTGGACCTGAAC--------CTGACGCCTTCGGAGAACTGCGCCAAGTGTAGGAAC
GTGGCGGGGCTCGGCGCTGCTACCGGGCAGGGTGTACATAAGGCGCT---------------------------------
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--------
>chr3D_713
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---------------GCGGTCAAACGGTCA----GAAAAGTACATGCACACACGTCCACGTCTAGAAGCCACCCGTACGT
ACTCCAAGAA--------------------------------AGACTTTGCTGGGCCC---TAGT---GG------TCGT
GCGTGCGTGCCCCATTTCCTACGTGCACCAAACCCC----AAGTAGG--------CA---CTATATATATA--GAGGCAT
CGGCCAGACAAGACAACCCAGAGCCACATATGCATTACACAGTGCAGTAATCAGCCGAT----------TAGCCGAAAGT
GATTTTACACGATCCATCGAGTAGCACACCGCCACTTTTGATCGGGGG-----ACTAGCCTGCCAGGGATCGAGTATTGG
TCCAG-------AC-------TCGAGA----GACGTCGGCCATGAGCAAGAGAGGCAGGGGCGTGTGGGACGTGGAGCTG
GGCAGCCTAGACACGGCCCGCCTGCTCATGCTCCTGGCGCAGCAGCGCCAGCATCAGCA------CCA---------CCA
GAGCGGCGTCGCCGGGGCGCCGCAGGCAATGGGCGGCGGCCGCATGTTCGAGTGCAAGACGTGCAACCGGCAGTTCCCCA
CGTTCCAGGCGCTCGGGGGACACCGCGCCAGCCACAAGCGCCCTAGGCTGCACCA---CACACCCCCGCAGCACGCGCT-
--CGTCCGCGTCGACGACGACGCAGCGCTCTGCCTCGGCCGCCGGGCTCCCCAGGCGCC---------GCCGCAGCCGGC
AAGGCCGAGGGTGCACGAGTGCCCCGTCTGCGGGCTCGAGTTCGCCGTCGGCCAGGCGCTGGGTGGGCACATGCGCCGGC
ACCGCGTTGAAGCCGAGGCCGAGGCCGGGGCCAACGCCCCGAGCAGCAAGGCGGCAGCGGCGACCGAGATGGTGGTGGCC
TCGTGCGACGACGGAGGGATCTGCCTGGACCTGAAC--------CTAACGCCTTCGGAGAACTGCGGCAAATGCAAGAGC
GCGGCGGTGCTCCGTGCCGCTACTGGGCAGGGTGTACATAAGGCGCT---------------------------------
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>chr3A_714
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----------------CGGTCAAACAGCCA----GAAAAGTACATGCACACACGTCCACGTCTAGAAGCCAGCCGTACGT
ACTCCAACAA--------------------------------AGACTTGG-TAGGAAC---TAGT---GG------TTGT
GCGTGCGTGCCCCATTTCCTACGTGCACCAAACCCC----AAGTAGG--------CA---CTATATATATACAGAGACAT
CGGCCAGACAAGACAACTCAGAGCCACATATGCATTACACAGTGCAGTAATCAGCCGAT----------TAGCCGAAACT
GATTTTACACGATCGAGT----AGCTCGCCGCGACTTTTGATCGGGGG-----ACTAGCCTGCCAGCGATCGAGT-----
-CCAG-------AC-------TCGAGA----GACATCAGCCATGAGCAAGAGAGGCAGGGGCGTGTGGGACGTGGAGCTG
GGCAGCTTCGACACGTCCCGCCTGCTCATGCTCCTCGCGCAGCAGCA---------GCA------CCA---------CCA
GCGCGGCGTCGCCGGGGCGCCGCAGGCGATGGGCGGCGGCCGCATGTTCGAGTGCAAGACGTGCAACCGGCAGTTCCCCA
CGTTCCAGGCGCTCGGAGGACACCGCGCCAGCCACAAGCGCCACAGGCTCCAGCA---CCCACCCCCGCAGCACGCACT-
--CGTCGGCGTCGGCGACGACGCAGCGCTCTGCCTCGGCCGCCGGGCGCCCCAGGCGCC---------GCCGCAGCCGCC
CAGGCCAAGGGTGCACGAGTGTCCCGTCTGCGGGCTCGAGTTCGCCGTCGGCCAGGCGCTGGGCGGGCACATGCGCCGGC
ACCGCGTCGAAGCCGAAGCTGTGGCCGGGGCCAGCGCCACGAGCATCAAGGCAGCGGCGACGACCGAGATGGTGGTGGCC
TCGTGCGACGACGGCGGGATCTGCCTGGACCTGAAC--------CTGACGCCTTCGGAGAACTGCGCCAAGTGCAGGAGC
GCGGCGGCGCTCGTCGCCGCTACCGGGCAGGGTGTACATAAGGCGCT---------------------------------
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>chr3B_846
CC------------------------------------------------------------------------------
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-----------------------------------------------------CACA---CTATATA---A--GAGCCAT
CAGCCATACGG-----GCCAGAGCCACATACGCATTACACAGTGCAGCGGGT---CGAT----------TAGCACAAC--
----------------GCCACT-------------TTTTGATCCGGGG-----ACTAGCCTGCCAGCTATCGCGT-----
-CTCAAGTCTCAAC-------TCGAGA----GACATCAGCCGTGAGCAAGAGGGGCAGGGATGTGTGGGACATGGAGCCG
GGCAGCCTGGACACGGCCCGCCTGCTCATGCTCCTTGCGCAGCATCA---------GCAGCACCAGCA---------CCA
GCGCGCCGTCGCCGG---GGCGCAGGTCATGGGCGGCGGCCGTGTGTTCGAGTGCAAGACGTGCAACCGGCAGTTCCCCA
CGTTTCAGGCGCTGGGGGGTCACCGTGCCAGCCACAAGCGCCCCAAGCTGCACCA---CCCGCAGCTGCACGCGGTT---
G---GCAATGCCGACGACGGCGCGGCGCTCTGCCTCGGCCGCCAGATGCCCCCGGTGCC---------GCCGCAGCCGCC
AAGGCCAAGGGTGCACGAGTGCCCCGTCTGCGGGCTCCAGTTCGCCGTCGGCCAGGCGCTGGGTGGGCACATGCGCCGGC
ACCGTGTCGAGGGCGAGGCCGCA------GCCAGAGCGCCGAGCTGCGAGGCC---GAGGCGACCAAGACGGCGTTGGCG
TCGTGCGACGCCGGCGGGATCTGCCTGGACCTGAACGGCTGAACCTGACGCCTTCGGAGAACTGCACCAAGTGTAGGAGC
GTGGCGGGGCTCGGCACTGCTACCGGGCAGGTTGTACATAAGGGCATCTCCA----------------------------
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--------
>SNPs
-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--------------------------------------
S----------------SSS-------------------------------------------S----------------
-------------S------------------------------S-----------------------------------
-----------S--------------------------SS----------------S----S-----SSSS---------
S-SS-S-S-S-SS----S--S--S--S-S-SSS--S--------------------------------------------
--------------------------------------------------------------------------------
-------------------S------------------------------------------------------------
----------S---------------------------------------------------------SSSS--------
--------------------------------------------------------------------------------
----------------S---------------------------------------------------------------
-------------S------------S-SS--------------------------------------------------
--------------------------------------------------------S-----------------------
--------------------------------------------------S-----SS----------------------
--------------------------------------------------------------------------------
--------------------------------------S-----------------------------------------
-----------------------S--------------------------------------------------------
--------------------------------------------------------------------SSSSSSSSS---
---------------------------------------S----------------------------------------
----------------------------------------S--------S--S--SSS-------SS--S----------
----S----S-------------------------------------------------SSSSSSSSS-----S------
--S-----------------------------------------------------------------------------
----------------------------------------S---S---------------S---------------S---
--------------------------------------------------------------------------------
------------S-----------S-----------------------------------------------------S-
--S---S-SS-S-S-SSS------------------S-------------------------------------------
------------------S-----------------------------------------------------------S-
--------------------------------------------------------------S-----------------
------------------S----S--------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------S-----------S---S--------------------------------
---------------------S-----S----------------------------------------------------
--------------------------------------------------------------------S---S-SSS---
----------------------S--S---SSSS----------------------------S------------S-----
-------------------------------S-----S----------------S----S--------------------
------S-----------------------S----------S-----------------------SS-SS-SSSSS----
---------------S--------------S-----S----------------S--------------S-----------
----------S------------------------S------------------SSS---S------------S-----S
--S--SS---------SS-------------------------------------------S---S-----S-------S
---S--S---------------------------S-------------------------------SS------------
--------
>forward_910
--------------------------------------------------------------------------------
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----------ACCAAGCGGTCAAACTCCAG--------------------------------------------------
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--------
>reverse_2955
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------CGTCAA
CCCATTCTGCTTGC------------------------------------------------------------------
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--------
