>input_sequence_73590
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-------------------------------------------------ATGGCAGCTTCAGCTCTCCACTCCACTGGCA
CTGCGGCCATGTCTCTCTCCCTCTTCCTGCTCGCAACCATCGCCGCCTCGTCCTTCTCTCCGGCCAACGCACAGGCGTCG
TCGTCATGCGCGAGCCACACCTTCTCGAGCAACCAGCTCTACGTGTCGTGCGCCGCCCTGCCGCGCCTCGGCACCACGCT
GCACTACAACTACACGGCCGCGGCCAACACCGTGGCCGTGGCGTTCCGCGCGCCGCAGACGAGCAAGGCCGGCGGGTGGG
TGGCGTGGGGGCTCAACCCTAACGGCACGGGCATGGTGGGCACGCAGGCCGTGGTGGCGTTCCGGCACTCCAACGGCAGC
CTCGTCGCGTACCCGACGCTGCTCGACAGCTACGCGCCGTCCATGGCGCCCGCAGACGCCGCGGAGCTGGCGTTCCCCGT
GTCGGACGTGGCGGCGGAGTACGCGAAGAACGGCAAGGAGATGGTCGTGTACGCGACGGTCGCGCTGCCCGGGAAGGGGA
GCAAGTTCACCCACGTGTGGCAGCAGGGGGGCTCGGTGGTGGACGACGTGCCGGCGGCGCACCCCACCACCGGGGATAAC
GTCCTCTCAACGGGCACCATCGATTTCAGCAAGTGA--------------------------------------------
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>chr2B_1_TraesCS2B01G151500
TGGACGGCCCTGTTTCACATTAAACATGTGAAATTTTTATTTTGCAAAAAAATGTGAACCTTTACTCAAAAAGAAAAACT
AGACATGTCAAACCGCCTCGCAAACCCATGCTCCAAACTCTCACACTAGGGCGAACGACACACAAATGTTGGGCGAGATT
GCGCATCACACTTTGCCTTTGGGAGAAGAAAACAAGAAATTATCATCCATACATATATTTATTTAATAATACTACAAAGT
AAAAAAGGC-ACTACAATAATATTGATTAGCTATTCTCAAAATATTCAAATGATGTTCCTAAAAATATATAATAAAATCA
TTTAACTATTTTCAGAATATGTTACAAGGGCACCGAGTGGTAAATATACATCAACTACACATGTGTAATTTCCAACAAAC
AATTGATCTTAGTCTCCTCAGTCGACCTGACGTAAAATCCGTGCAGGGTTTTACAATTTTTCGGAACTACGAGAACAAAT
CCTTGCATATTGTTGCACAAGATGAACATATTGTTACAATACGATAAGCATTTTCTTTAGATCTATTCAACTGAGATTTA
GTTATTTGTGGGTCCACACAATAGTATATG------TCACACCAACTGAACAAATCAATACAACAAGGTGAACATTTTTA
GATACATATAAACAATTTTATAAAATCAACTAAGGCTTTGTTAATTCTCAGATGGAGAGAGTATTTTGGTTGCGGTGTGC
TGCGCGGAGCTATTTACCACGC----------------------------------------------------------
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-CATGACACCAACTAACGTTCCACGAGTACTGCCGACG----AGTAC-ATGGCCGGTGATCCAATTTCTAGGTGACCTAC
CCAGTTGATCTCATGTCAGACGCGGTTCACTTGTGTCAC-TGTACA------TTTCCGAGCAACTCTCAGCTTCCCCACC
AAACCATAGCTCCTTTATAAACCCCAT----CTCCTTGCCTCTAATCCCACCGCACTAGCTAACCAGTACCTTCTCATTG
CTCCACTCCACA-------GACAGCAACAACATCATTTTCTCCCAAGAAATGGCAGCTTCAGCTCTCCACTCCACTGGCA
CTGCGGCCATGTCTCTCTCCCTCTTCCTGCTCGCAACCATCGCCGCCTCGTCCTTCTCTCCGGCCAACGCACAGGCGTCG
TCGTCATGCGCGAGCCACACCTTCTCGAGCAACCAGCTCTACGTGTCGTGCGCCGCCCTGCCGCGCCTCGGCACCACGCT
GCACTACAACTACACGGCCGCGGCCAACACCGTGGCCGTGGCGTTCCGCGCGCCGCAGACGAGCAAGGCCGGCGGGTGGG
TGGCGTGGGGGCTCAACCCTAACGGCACGGGCATGGTGGGCACGCAGGCCGTGGTGGCGTTCCGGCACTCCAACGGCAGC
CTCGTCGCGTACCCGACGCTGCTCGACAGCTACGCGCCGTCCATGGCGCCCGCAGACGCCGCGGAGCTGGCGTTCCCCGT
GTCGGACGTGGCGGCGGAGTACGCGAAGAACGGCAAGGAGATGGTCGTGTACGCGACGGTCGCGCTGCCCGGGAAGGGGA
GCAAGTTCACCCACGTGTGGCAGCAGGGGGGCTCGGTGGTGGACGACGTGCCGGCGGCGCACCCCACCACCGGGGATAAC
GTCCTCTCAACGGGCACCATCGATTTCAGCAAGTGAAAGTAACATAGGAGTATATGGAGTACGTTCGTAGGTATGCTTAT
TATTCGTATATACGCGTGTCGTCTGTTCCGTATGTATGT--------GCCCGCGAGTCA--TCGCTCCCTTTATATATCG
GTGTATGAAT------GCTTGTATTCAGCGCTCGGCGCAGAGTTATGAATACGTACTGTGTGTCTAACTTGTGCT--CGG
CATACCCCAGATTTAAATGA-------ACGCAAATTATAGCGGGCGGAAAGAAGACGATGAGGATTCAGATGCCTGCG--
------CCTGAGTTCACCGAATCGGAATCCAAACCGTCTCACGCTAGAATTCCAAAACGGAATCACGGTCCATAATCCAT
ATAACCCATCAGAACCTAGC-------------------------TCGGTCCTCTGGAACCGTAGCTCGTC-TTTGCGCT
TCAA-------------AAGGCACA-----TCAATTCAACCATGGCGATCAAACGATCCGCCGCCGA---TGTCCCGGCA
TCTCCCCCTCGGCCGCGGACGGCAAAGCGGATTCTCACCACCGACTCGCCGCCACCGCCGCCGCCTTACCTCCCTTCCGA
GGTCATCTTCGGCATCCTGTCATGGCTGCCGTCCAGGTCCGTCCTCCGCTTCAGGTCCGTCTGCAAGTCCTGGCAGGCCA
TGCTATCCGACCCAGTTTTT--------ATCACTGCTCATCACGAGTGCTCCAAGAAGATCCACCCGTCGCTGCTCATGG
TGCCCTGCGCGTACGACCGCGACGATCTCCTCACGAACAAAAACGACAGCGCCTTCCGCATGTCCTTCTACAGGTACCGC
GTCGGCGACGTGGAGGAGC------TGGTGCACCAGGAGGAGCTGCCCCAAGGGATCGCCCTGTGGAGCAGCCCACTGCA
CTGCGACGGCCTGATCCTCATCTCCACCATGCGGC---AGGAGCTGGTGGTCTGCAACCCGGCGACGAGGGAGTTCGTCA
CCTTACCAGAACG------GAAGCACTACAT----CTTCGCCTTCCCGAGGGTGGGGTTCGGGTTCGACCCCCGCAGTAA
GAAGTACAAGGTGGCGAGGTTCT
>chr2A_194
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---------------------------------AAGAAATTATCATCCATACATATATTA----AATAATACTATAGAAT
TCAGCAAAATACTACGACAATATCGATTAACTATTCTCAAAATGCTTAGAT-ATGTTTCCAAAAATATATAATAAAATCA
TTTAACTATTTTCAAAATATTTTACAAGGGCACTGAGCGGTAAATATACAACAACTACAGATGCGTAATTTCCAACAAAC
ATTTGATATT---CTCCTCAGTCGATCCGACGTAAAACCCGTGCAAGGTTTTATAATTTTTTTT--------GAACAGAC
CCTTGCATATTATTGCACAAGATGAACATATTGTTACAATACGGTAAACATTTTC-TTAGATCTATTCAACCAAGATTTA
GCTATTTCTGGGTCCACACAATAGTACTATATACTTTCACACTAACTGAACTAATCAACACAAAAA-GTGGACATTTTTA
CATACTTATAAACAAATTTATAAAATCAACTAAGGATTTGTTAATTCTCAGATGGAGAGAGTATTTCGGTTGCGGTATGC
TGCGCGGAGCTATTTAGGCATCTTCAACGCTAGGCGCTAAGGGTGGACGCTAGGAATAATTTCCAGTCCGATCGTCGGTT
ACGTCCTCGATTCCTGGCGCCCGGAGCCGCAGCGACGCAAAGAAAGGCAGCGAGCGCTTGCCTCTTTTTAGCCCACGAGA
TGAGGCACGAGCGCTGTTTTTCACACGTATTTAGCGCCCATGGTTAGCTCCAGCGTTGGAGCAGATAACGCTTGGGGATT
TTTAAACCTTTTGCTATTTATTGTTTTCTGTTTAAGCACCTAGATAAGCGTCTACCATTATACATGCTCTTACCACTCCA
GCATGACGCCAACTAACGTTCCACGAGTATTGCCGTCCGATAAGTACAATGGCCGGTGATCCAATATGTAGGTCACCTAC
CCAGTTGATCCCATGTCAGACGTGGTTCACTTGTGTCACTTGTACA------TTTCCAAGCAACTCTCATCTTCCCCACC
AAACCCTAGCCCCTTTAAAAACCCCAT----CTCCTTTCCTCTAACCCCACTGCACTAGCTAGCCAGTACCATCTCATTG
TGCCACTCCACACTCCACAGACAGCAACTCCATCATTTTCTCCCAAGAAATGGCAGCTTCAGCTCTCCACTCCACTGGCA
CTGCGGCCATGTCTCTCTCCCTCTTCCTGCTCGCGGCCATCGCCGCCTCATCATTCTCTCCGGCCAACGCACAGGCGTCG
TCGTCATGCGCGAGCCACACCTTCTCGAGCAACCAGCTCTATGCGTCGTGCACCGCCCTGCCGCGCCTCGGCACCACGCT
GCACTACAACTACACGGCCGAGGGCAACTCGGTCGCCGTGGCGTTCCGCGCGCCGCAGACGAGCAAGGCCGGCGGGTGGG
TGGCGTGGGGGCTCAACCCCAACGGCACGGGCATGGTGGGCACGCAGGCCGTGGTGGCGTTCCGGCATTCCAACGGCAGC
CTCGTCGCGTACCCGACGATGCTGGACAGCTACGCGCCGTCCATGGCGCCCGCGGACGGCGCCGAGCTGGCGTTCCCCGT
GTCGGACGTGGCGGCCGAGTACGCCAAGAACGGCAAGGAGATGGTCGTGTACGCGACGGTCGCGCTGCCCGGGAAGGGGA
GCAAGTTCACCCACGTCTGGCAGCAGGGGGGCTCCGTGGTGGACGACGTGCCGGCGGCGCACCCCACCACCGGGGATAAC
GTGCTCTCCACGGGCACCATCGATTTCAGCAAGTGAAAGTAACATA------TACGGAGTACGTTCCTAGGTATGCTTAT
TTCGTAC-TATACGCGTGTCGTCTGTTCCGTATGTATGT--------GCCCGCGAGCCATCTCGCTCCCTATATATGTCG
ATATATGAATATGAATGCTTGTAATCAGCGCTCGGCGCACAGTTATGAATACGTACTGTC--TGTAATTTGTGGTCGCGG
CATACCCCAGATTTAGA-GA-------ACGCAAATTATAGCGGGTGGAAAGAAGACGATGCGGATTCAGATGCCTGCGGG
GCTGTGCCTGAGTTCGCCGAATCGGAATCCAAACCGTCTCACGCTAGAATTCCAAAATCCCGG------------TCCAT
ATATATAACCCACCAGAACCTACCTCAGGCATGTTTGAGCGCCGATCGTCCGGAACCATATATAGCTCGTC-TTTGCGCC
TCAAAGCCTTTATAAATAAGGCACA-----TCAATTCAACCATGGCGATCAAACGATCTGCCG---ACGATGTCCCGGCA
TCTCCTCCTCGGCCGCGGACGGCAAAGCGGATTCTCACCACCGAGT------CGCCGCCGCCGCCTTACCTCCCTTCCGA
TGTCATCTTCGGCATCCTGTCATGGCTGCCGTCCAGGTCCG---------------------------------------
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>chr2D_629
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---------------------------------------------------------------------------TTTTA
GATACAAATCAACAATTTTATAAAATAAACTAAGGCTTTGTTAATTCTCAGATGAAGAGAGTATTTTGGTTGCGGTGTGC
TGCGCGGAGCTATTTACCACTC----------------------------------------------------------
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-CATGACACCAACTAACGTTCCACGAGTATCGCCGACG----AGTACAATGGCCGGTGATCCAATTTCTAGGTCACCTAC
CCAGTTGATCCCATATCAGACGTGATTCACTTGTGTCACTGTACATTTCCATTTTCCAAGCAACTCTCATCTTCCCCACC
AAACCCTAGCTCCTTTATAAACCCCACCTAGCTCCTCCCCTCTAATCACACTGCACTACCTAACCAGTACCTTCTCATTG
TTCCACTCCACAGTCCACAGACAGCAACTCCATCATTTTCTCCCAAGAAATGGCAGCTTCAGCTCTCCACTCCACTGGCA
CTGCGGCCATGTCTCTCTCCCTCTTCCTGTTCGCGACCATCGCCGCCTCGTCCTTCTCTCCAGCCGACGCACAGGCATCA
TCATCATGCGCGAGCCACACCTTCTCGAGCAACCAGCTCTACGCGTCGTGCGCCGCCCTGCCGCGCCTCGGCACCACGCT
GCACTACAACTACACGGCGGCGGCCAACACGGTGGCCGTCGCGTTCCGCGCGCCGCAGCCGAGCAAGGCCGGCGGGTGGG
TGGCGTGGGGGCTCAACCCCAACGGCACCGGCATGGTGGGCACGCAGGCCGTGGTGGCGTTCCGGCACTCCAACGGGAGC
CTCGTCGCGTACCCGACGCTGCTCGGCAGCTACGCGCCGTCCATGGCGCCCGCCGCCGCCGCGGAGCTGGCGTTCCCCGT
GTCGGACGTGGCGGCGGAGTACGCGAGGAACGGCAAGGAGATGGTCGTGTACGCGACGGTGGCGCTGCCCGGGAAGGGGA
GCAAGTATACCCACGTCTGGCAGCAGGGGGGCTCCGTGGTGGACGATGTGCCGGCGGCGCACCCCACCACCGGGGACAAC
GTGCTCTCCACGGGCACCATCGATTTCAGCAAGTGAAACTACTACCTATATAT--------CGTTACTAGGTATGCTTAT
ATCCG---TATACGCGTGTCGTTTGTTCCGTATGTACGTATGTGCCCGCGCGCGAGCCA--TCGCTCCCTCTATATATCG
ATGTATGAAT------GTTTGTAATCAGCGCTCGGCGCAGAGTTGTGAATACGTACT---TGTGTAATTTGCGCT--CGG
CGTACGCCAGATTTAAATGAACGCAATACGCAAATTATGGCGGGCGGAAAGAAGACGATGCGGATTCAGATGCCTGCG--
------CCTGATTTCACCGAATCGGAATCCAAACCGTCCCACGCTAGAATTCCAAAATCCCGG------------TCCAT
ATAACCCACCAGATCGAACCTAGCTCAGGCATGTTTGAGCGCCGATCGGTCCTATGGAACCATAGCTCGTCTTTTGCGCT
TCAA-------------AAGGCACA-----TCAATCCAACCATGGCGATCAAACGATCCGCCG---ACGATGTCCCGGCA
TCTCCCCCTCGGCCGCGGACGGCAAAGCGGATTCTCACCACCGAGTCGCCGCCGCCGCCGCCGCCTTACCTCCCTTCCGA
GGTCATCTTCGGTATCCTGTCATGGCTGCCGTCCAGGTCCGTCCTCCGCTTCAGGTCCGTCTGCAAGTCCTGGCAGGCCA
TGCTATCCGACCCAGTTTTC--------ATCACCGCTCATCACGAGTGCTCCAAGAAGACCCGCCCGTCGCTGCTCATGG
TGCCCTGCGCGTACGACCGCGAAGATCTCCACACGAACGAAAACGACAGCGCCTTCCGCATGTCCTTCTACAGGTACCGC
GTCGGCGACGTGGAGGAGC------TGGTGCGCCAGGAGGAGCTGCCCGGAGGGATCTCCCTGTGGAGCAGCCCCCTGCA
CTGCGACGGCCTGATCCTCATCTCCACCATGCGGC---AGCAGCTGGTGGTCTGCAACCCGGCGACGAGGGAGTTCATCA
CCTTACCCGAACG------GAAGCACTACAC----CTTCACGTTCCCGAGGGTAGGGTTCGGG---------CGCAGCAA
GAAGTACAAGGTGGCGAGGTT--
>chr2B_1985
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---------------------------------------------------CTCTGGAACCATAACTCGTCTTTCCAC--
---A-------------AAGGCACATTGATTCAATTCAACCATGGCGATCAAGAGATGCGCCG---A---TGCCCCGGCA
ACTCCTCCTCGGCCGCGGACGGCAAAGCGGGCTCTCCTCTCCT------CGTCGCCGCCGCCGCCTTACCTCCCTTCCGA
CGTCATCCTCACCATCCTGTCATGGCTGCCGCCCAAGTCCGTGCTCCGCTTCACGTCCGTCTGCAAGGCCTGGCGGGCCA
TGCTATCCGACCCAGGTTTC--------ATCACCGCCCACCTCGAGCGCTCCAAGACGATCCGCCCGTCGCTGCTCACGG
TGCCCTGCGCGTACGACCCCAACGACATCCAGAAGAACAACGACGACAGCGCCTTCGACGTGTCCTTCTACAGGTACCGC
CCCGGCGGCGCCGAGGAAC------TGCTGCACCGGGAGGAGCTGCCCGGAGGGATCTCCCTGTGGAGCAGCCCCCTGCA
CTGCGACGGCCTGATCCTCGTATCCACCATGAGAGAGGAGGAGTTGGTGGTCTGCAACCCGGCGACGAGGGAGTTCCTCG
CCCTGCCGGAGCGGAAGCAGAAGCACTGCGTGCGCGTACACGTTCCCTAGGGCGGGGCTCGGGTTCGACCCTCGCAGCAA
GAGGTACAAGGTGGCGAGGTTCT
>chr2D_1985
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---------------------------------------------------CTCTGGAACCATAACTCGTCTTTCCAC--
---A-------------AAGGCGCGTTGATTCAATTCAACCATGGCGATCAAGAGACGCGCCG---A---TGCCCCGGCA
ACTCCTCCTCGGTCGCCGACGGCAAAGCGGGCTCTCCTCGACT------CGCCGCCGCCGCCGCCTTACCTCCCTTCCGA
CGTCATCCTCGCCATCCTGTCATGGCTGCCGCCCAAGTCCGTGCTCCGCTTCACGTCCGTCTGCAAGTCCTGGCAGGCCA
TGCTATCCGACCCAGGTTTC--------ATCACCGCCCACCTCGAGCGCTCCAAGACGATCCGCCCGTCGCTGCTCATGG
TGCCCTGCGTGTACGACCCCAACGACATCAAGAGGAACAATGAGGACAGCGCCTTCGACATGTCCTTCTACAGGTACCGC
GCCGGCGGCGCCGAGGAGC------TGGTGCACCGGGAGGAGCTGCCCGGAGGGATCGCCCTGTGGAGCAGCCCCCTGCA
CTGCGACGGCCTCATCCT--TATCCACCATGAGAGAGGAGGAGCTGGTGGTCTGCAACCCGGCGACGAGGGAGTTCCTCG
CCCTGCCGGAACGGAAGCAGAAGCACTGCGT----GTACACGTTCCCGAGGGCGGGGCTCGGGTTCGACCCCCGCAGCAA
GAAGTACAAGGTGGCGAGGTTCT
>chr2A_2025
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------------------------------TCAATTCAACCATGGCGATCAAGAGATGCGCCG---A---TGCCCGGGCA
ACTCCTCCTCGGCCGCCGACGGCAAAGCGGGCTCTCCTCTCCT------CGCCGCCGCCGCTGCCTTACCTCCCTTCCGA
CGTCATCCTCGCCATCCTGTCATGGCTGCCGCCCAAGTCCGTGCTCCGGTTCAGGTCCGCCTGCAAGGCCTGGCGGGCCA
TGCTATCCGACCCAGGTTTCAATGTTTCATCGCCGCCCACCTCGAGCGCTCCAAGACGGTCCGCCCGTCGCTGCTCATGG
TGCCCTGCGCGTACGACCCCGACGACATCCAGAGGAACAATGAGGACAGCGCCTTCGACGTGTCCTTCTACAGGTACCGC
GCCGGCGGCGCCGAGGAGCCGGTGCTGCTGCACCGGGAGGAGCTGCCGCGCGGGATCGCCCTGTGGAGCAGCCCCCTGCA
CTGCGACGGCCTGGTCCTCATCTCCACCATGAGAGAGGAGGAGCTGGCGATCTGCAACCCGGCGACGAGGGAGTTGCTCG
CCCTGCCGGAGCGGAATCAGAAGCACTGCGT----GTACACGTTCCCGAGGGCGGGGCTCGGGTTCGACCCCCGCAGCAA
GAGGTACAAGGTGGCGAGGTTCT
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--------------------------SSSSS----------S-S-S-
SS-SS-SSS------S-S-----S-----S-------------SS-S-S--S-----S-S--------------------
--------------S-----S------------S---S------------S--------S---S----------------
-S-----S--SSS------------S-S---------S-------S-------S-------SSSSSSSSSSS-----S-S
-----------S-------------------------------S---S-------S---------------SS-------
-S-----S------------------SSSS------------S--------S------S----S--S---S---------
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--------------------S-----------------------------------------------------------
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-----------------------------S-------------------------------------------S------
----------S-----------S----------------------------------S-----------S----------
-----S-------------------------------S-------------S----------------------------
S---------------------------SS--------------------------------------------------
----------------------------------S---------------------------------------------
-------------------------------------------S------------------------------------
------------------------------S-------------------------------------------------
-------------------S------------------------------------------------------------
-----------------------------------------------------S--------------------------
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----------------S-----------------S---------------------------------------------
--S-----S-------------------------------------SSSS----S-----------S-------------
-SSSSSSS------------------------------------------------S-------------S---------
S----------------------S-----------------------------------S---S---S------------
------------------------------------------------------------S-------------------
---------------------------------------------------------SSSSSSSSSSSSSSSSSS-----
--------S----S-SS-S------------------------------------------S------------------
---------------------------------------------------------------SSS--------------
--------------------------------------------S--------S--------------------------
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-------------------S-------------S----------------------------S-----------------
------------------------------S-------------------------------------------------
-------------------------------------------------S------------------------S-----
----------------------------------------------------------------------------S---
-------S-------------------------------S-S-----------------------------------S--
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>forward_146
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----------------------------------------------TAGGGCGAACGACACACAAA--------------
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>reverse_1929
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--------AACGGGCACCATCGATTTCA----------------------------------------------------
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>forward_163
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---------------------------------------------------------------AAATGTTGGGCGAGATT
GCG-----------------------------------------------------------------------------
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>reverse_2382
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-------------------------------------------------------------GTAGCTCGTCTTTGCGCTT
C-------------------------------------------------------------------------------
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