>input_sequence_73585
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-----------------------------------------------------------------------ATGGCAGCT
TCAGCTCTCCACTCCACTGGCACTGCGGCCATGTCTCTCTCCCTCTTCCTGCTCGCGGCCATCGCCGCCTCATCATTCTC
TCCGGCCAACGCACAGGCGTCGTCGTCATGCGCGAGCCACACCTTCTCGAGCAACCAGCTCTATGCGTCGTGCACCGCCC
TGCCGCGCCTCGGCACCACGCTGCACTACAACTACACGGCCGAGGGCAACTCGGTCGCCGTGGCGTTCCGCGCGCCGCAG
ACGAGCAAGGCCGGCGGGTGGGTGGCGTGGGGGCTCAACCCCAACGGCACGGGCATGGTGGGCACGCAGGCCGTGGTGGC
GTTCCGGCATTCCAACGGCAGCCTCGTCGCGTACCCGACGATGCTGGACAGCTACGCGCCGTCCATGGCGCCCGCGGACG
GCGCCGAGCTGGCGTTCCCCGTGTCGGACGTGGCGGCCGAGTACGCCAAGAACGGCAAGGAGATGGTCGTGTACGCGACG
GTCGCGCTGCCCGGGAAGGGGAGCAAGTTCACCCACGTCTGGCAGCAGGGGGGCTCCGTGGTGGACGACGTGCCGGCGGC
GCACCCCACCACCGGGGATAACGTGCTCTCCACGGGCACCATCGATTTCAGCAAGTGA----------------------
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>chr2A_1_TraesCS2A01G129200
ATATAATAAAATCATTTAACTATTTTCAAAATATTTTACAAGGGCACTGAGCGGTAAATATACAACAACTACAGATGCGT
AATTTCCAACAAACATTTGATATT---CTCCTCAGTCGATCCGACGTAAAACCCGTGCAAGGTTTTATAATTTTTTTT--
------GAACAGACCCTTGCATATTATTGCACAAGATGAACATATTGTTACAATACGGTAAACATTTTC-TTAGATCTAT
TCAACCAAGATTTAGCTATTTCTGGGTCCACACAATAGTACTATATACTTTCACACTAACTGAACTAATCAACACAAAAA
-GTGGACATTTTTACATACTTATAAACAAATTTATAAAATCAACTAAGGATTTGTTAATTCTCAGATGGAGAGAGTATTT
CGGTTGCGGTATGCTGCGCGGAGCTATTTAGGCATCTTCAACGCTAGGCGCTAAGGGTGGACGCTAGGAATAATTTCCAG
TCCGATCGTCGGTTACGTCCTCGATTCCTGGCGCCCGGAGCCGCAGCGACGCAAAGAAAGGCAGCGAGCGCTTGCCTCTT
TTTAGCCCACGAGATGAGGCACGAGCGCTGTTTTTCACACGTATTTAGCGCCCATGGTTAGCTCCAGCGTTGGAGCAGAT
AACGCTTGGGGATTTTTAAACCTTTTGCTATTTATTGTTTTCTGTTTAAGCACCTAGATAAGCGTCTACCATTATACATG
CTCTTACCACTCCAGCATGACGCCAACTAACGTTCCACGAGTATTGCCGTCCGATAAGTACAATGGCCGGTGATCCAATA
TGTAGGTCACCTACCCAGTTGATCCCATGTCAGACGTGGTTCACTTGTGTCACTTGTACATTTCC-------AAGCAACT
CTCATCTTCCCCACCAAACCCTAGCCCCTTTAAAAAC----CCCATCTCCTTTCCTCTAACCCCACTGCACTAGCTAGCC
AGTACCATCTCATTGTGCCACTCCACACTCCACAG-------ACAGCAACTCCATCATTTTCTCCCAAGAAATGGCAGCT
TCAGCTCTCCACTCCACTGGCACTGCGGCCATGTCTCTCTCCCTCTTCCTGCTCGCGGCCATCGCCGCCTCATCATTCTC
TCCGGCCAACGCACAGGCGTCGTCGTCATGCGCGAGCCACACCTTCTCGAGCAACCAGCTCTATGCGTCGTGCACCGCCC
TGCCGCGCCTCGGCACCACGCTGCACTACAACTACACGGCCGAGGGCAACTCGGTCGCCGTGGCGTTCCGCGCGCCGCAG
ACGAGCAAGGCCGGCGGGTGGGTGGCGTGGGGGCTCAACCCCAACGGCACGGGCATGGTGGGCACGCAGGCCGTGGTGGC
GTTCCGGCATTCCAACGGCAGCCTCGTCGCGTACCCGACGATGCTGGACAGCTACGCGCCGTCCATGGCGCCCGCGGACG
GCGCCGAGCTGGCGTTCCCCGTGTCGGACGTGGCGGCCGAGTACGCCAAGAACGGCAAGGAGATGGTCGTGTACGCGACG
GTCGCGCTGCCCGGGAAGGGGAGCAAGTTCACCCACGTCTGGCAGCAGGGGGGCTCCGTGGTGGACGACGTGCCGGCGGC
GCACCCCACCACCGGGGATAACGTGCTCTCCACGGGCACCATCGATTTCAGCAAGTGAAAGTAACATA------TACGGA
GTACGTTCCTAGGTATGCTTATTTCGTAC-TATACGCGTGTCGTCTGTTCCGTATGTATGT--------GCCCGCGAGCC
ATCTCGCTCCCTATATATGTCGATATATGAATATGAATGCTTGTAATCAGCGCTCGGCGCACAGTTATGAATACGTACTG
TC--TGTAATTTGTGGTCGCGGCATACCCCAGATTTAGA-GA-------ACGCAAATTATAGCGGGTGGAAAGAAGACGA
TGCGGATTCAGATGCCTGCGGGGCTGTGCCTGAGTTCGCCGAATCGGAATCCAAACCGTCTCACGCTAGAATTCCAAAA-
----TCCCGGTCCATAT---ATATAACCCACCAGAACCTACCTCAGGCATGTTTGAGCGCCGATCGTCCGGAACCATATA
TAGCTCGTC-TTTGCGCCTCAAAGCCTTTATAAATAAGGCACATCAATTCAACCATGGCGATCAAACGATCTGCCGACGA
TGTCCCGGCATCTCCTCCTCGGCCGCGGACGGCAAAGCGGATTCTCACCACCGAGT------CGCCGCCGCCGCCTTACC
TCCCTTCCGATGTCATCTTCGGCATCCTGTCATGGCTGCCGTCCAGGTCCGAAAATATTGCTTGGGACCATGGTCCACCC
GAACCCATGCTCAGAACCGTTCATCTCAAGACACCGCGTATGGAAATATGTGCATGGTGAGTAAACTATTGCATGGCAGG
AACAGTTTAGTTTGATGGCGGGAACAATTTAGGGCATCTCCAACAGATTGTATGTTAGTTTGTTGGTAAAATATATCATG
TCATCAACCAACACCTTAACATACAACAACTTCAATGGGTTGTATGTAGTTTGCCCAATAGGATGTGAGATAATAAATAA
GGTGCTCTCTCATTCTACATTGGAGTTTGTGCAAAGGGTGTTGGTTCATGTACATACAACATTTCTCTCTTCCCTCATTT
ATTATATGACACATCATTAAAAATCCTATGTGGCAAAATCTACCAACAACTATCTTAC
>chr2B_1
ATATAATAAAATCATTTAACTATTTTCAGAATATGTTACAAGGGCACCGAGTGGTAAATATACATCAACTACACATGTGT
AATTTCCAACAAACAATTGATCTTAGTCTCCTCAGTCGACCTGACGTAAAATCCGTGCAGGGTTTTACAATTTTTCGGAA
CTACGAGAACAAATCCTTGCATATTGTTGCACAAGATGAACATATTGTTACAATACGATAAGCATTTTCTTTAGATCTAT
TCAACTGAGATTTAGTTATTTGTGGGTCCACACAATAGTATATG------TCACACCAACTGAACAAATCAATACAACAA
GGTGAACATTTTTAGATACATATAAACAATTTTATAAAATCAACTAAGGCTTTGTTAATTCTCAGATGGAGAGAGTATTT
TGGTTGCGGTGTGCTGCGCGGAGCTAT-----------------------------------------------------
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---TTACCACGC---CATGACACCAACTAACGTTCCACGAGTACTGCCGACG----AGTAC-ATGGCCGGTGATCCAATT
TCTAGGTGACCTACCCAGTTGATCTCATGTCAGACGCGGTTCACTTGTGTCAC-TGTACATTTCC-------GAGCAACT
CTCAGCTTCCCCACCAAACCATAGCTCCTTTATAAAC----CCCATCTCCTTGCCTCTAATCCCACCGCACTAGCTAACC
AGTACCTTCTCATTGCTCCACTCCACA-------G-------ACAGCAACAACATCATTTTCTCCCAAGAAATGGCAGCT
TCAGCTCTCCACTCCACTGGCACTGCGGCCATGTCTCTCTCCCTCTTCCTGCTCGCAACCATCGCCGCCTCGTCCTTCTC
TCCGGCCAACGCACAGGCGTCGTCGTCATGCGCGAGCCACACCTTCTCGAGCAACCAGCTCTACGTGTCGTGCGCCGCCC
TGCCGCGCCTCGGCACCACGCTGCACTACAACTACACGGCCGCGGCCAACACCGTGGCCGTGGCGTTCCGCGCGCCGCAG
ACGAGCAAGGCCGGCGGGTGGGTGGCGTGGGGGCTCAACCCTAACGGCACGGGCATGGTGGGCACGCAGGCCGTGGTGGC
GTTCCGGCACTCCAACGGCAGCCTCGTCGCGTACCCGACGCTGCTCGACAGCTACGCGCCGTCCATGGCGCCCGCAGACG
CCGCGGAGCTGGCGTTCCCCGTGTCGGACGTGGCGGCGGAGTACGCGAAGAACGGCAAGGAGATGGTCGTGTACGCGACG
GTCGCGCTGCCCGGGAAGGGGAGCAAGTTCACCCACGTGTGGCAGCAGGGGGGCTCGGTGGTGGACGACGTGCCGGCGGC
GCACCCCACCACCGGGGATAACGTCCTCTCAACGGGCACCATCGATTTCAGCAAGTGAAAGTAACATAGGAGTATATGGA
GTACGTTCGTAGGTATGCTTATTATTCGTATATACGCGTGTCGTCTGTTCCGTATGTATGT--------GCCCGCGAGTC
A--TCGCTCCCTTTATATATCGGTGTATGAAT------GCTTGTATTCAGCGCTCGGCGCAGAGTTATGAATACGTACTG
TGTGTCTAACTTGTGCT--CGGCATACCCCAGATTTAAATGA-------ACGCAAATTATAGCGGGCGGAAAGAAGACGA
TGAGGATTCAGATGCCTGCG--------CCTGAGTTCACCGAATCGGAATCCAAACCGTCTCACGCTAGAATTCCAAAAC
GGAATCACGGTCCATAATCCATATAACCCATCAGAACCTAGCTC---------------------GGTCCTCTGGAACCG
TAGCTCGTC-TTTGCGCTTCAA-------------AAGGCACATCAATTCAACCATGGCGATCAAACGATCCGCCGCCGA
TGTCCCGGCATCTCCCCCTCGGCCGCGGACGGCAAAGCGGATTCTCACCACCGACTCGCCGCCACCGCCGCCGCCTTACC
TCCCTTCCGAGGTCATCTTCGGCATCCTGTCATGGCTGCCGTCCAGGTCCG-----------------------------
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>chr2D_711
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---TTACCACTC---CATGACACCAACTAACGTTCCACGAGTATCGCCGACG----AGTACAATGGCCGGTGATCCAATT
TCTAGGTCACCTACCCAGTTGATCCCATATCAGACGTGATTCACTTGTGTCAC-TGTACATTTCCATTTTCCAAGCAACT
CTCATCTTCCCCACCAAACCCTAGCTCCTTTATAAACCCCACCTAGCTCCTCCCCTCTAATCACACTGCACTACCTAACC
AGTACCTTCTCATTGTTCCACTCCACA-------GTCCACAGACAGCAACTCCATCATTTTCTCCCAAGAAATGGCAGCT
TCAGCTCTCCACTCCACTGGCACTGCGGCCATGTCTCTCTCCCTCTTCCTGTTCGCGACCATCGCCGCCTCGTCCTTCTC
TCCAGCCGACGCACAGGCATCATCATCATGCGCGAGCCACACCTTCTCGAGCAACCAGCTCTACGCGTCGTGCGCCGCCC
TGCCGCGCCTCGGCACCACGCTGCACTACAACTACACGGCGGCGGCCAACACGGTGGCCGTCGCGTTCCGCGCGCCGCAG
CCGAGCAAGGCCGGCGGGTGGGTGGCGTGGGGGCTCAACCCCAACGGCACCGGCATGGTGGGCACGCAGGCCGTGGTGGC
GTTCCGGCACTCCAACGGGAGCCTCGTCGCGTACCCGACGCTGCTCGGCAGCTACGCGCCGTCCATGGCGCCCGCCGCCG
CCGCGGAGCTGGCGTTCCCCGTGTCGGACGTGGCGGCGGAGTACGCGAGGAACGGCAAGGAGATGGTCGTGTACGCGACG
GTGGCGCTGCCCGGGAAGGGGAGCAAGTATACCCACGTCTGGCAGCAGGGGGGCTCCGTGGTGGACGATGTGCCGGCGGC
GCACCCCACCACCGGGGACAACGTGCTCTCCACGGGCACCATCGATTTCAGCAAGTGAAACTACTACCTATATAT-----
---CGTTACTAGGTATGCTTATATCCG---TATACGCGTGTCGTTTGTTCCGTATGTACGTATGTGCCCGCGCGCGAGCC
A--TCGCTCCCTCTATATATCGATGTATGAAT------GTTTGTAATCAGCGCTCGGCGCAGAGTTGTGAATACGTACT-
--TGTGTAATTTGCGCT--CGGCGTACGCCAGATTTAAATGAACGCAATACGCAAATTATGGCGGGCGGAAAGAAGACGA
TGCGGATTCAGATGCCTGCG--------CCTGATTTCACCGAATCGGAATCCAAACCGTCCCACGCTAGAATTCCAAAA-
----TCCCGGTCCATAT---AACCCACCAGATCGAACCTAGCTCAGGCATGTTTGAGCGCCGATCGGTCCTATGGAACCA
TAGCTCGTCTTTTGCGCTTCAA-------------AAGGCACATCAATCCAACCATGGCGATCAAACGATCCGCCGACGA
TGTCCCGGCATCTCCCCCTCGGCCGCGGACGGCAAAGCGGATTCTCACCACCGAGTCGCCGCCGCCGCCGCCGCCTTACC
TCCCTTCCGAGGTCATCTTCGGTATCCTGTCATGGCTGCCGTCCAGGTCCG-----------------------------
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>SNPs
----------------------------S-----S------------S---S------------S--------S---S--
---------------S-----S-----------------S-S---------S-------S-------S-------SSS--
-----------S-S-----------S-------------------------------S---S------------------
-----SS--------S-----S------------------SSSSSSSSSS------S--------S------S----S--
----S---------S----S---------S-------------------S------------------------------
S---------S----------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSS---------SSS------S---------------------------S-SSSSS-----------------------S
-S---------------------------------------------------S--------------------------
-------------------------S------S-------------------S-------S----------------S--
------S---------S----------SSSSSSS----------------------------------------------
---------------------------------------------------------S-------------S--S-----
---------------------------------------------------------------S---------S------
------------------------------------------S--S----S----S------------------------
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---------S------------------------------S----S-----------------------------S----
S---S--------------------------------S--------S---------------------------------
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----------------------------------------------------------------------------S---
-------------------------SSSS---------------------------------------------------
-SS---------S-----S-----S-------SSSSSS-----------------------S------------------
-S-------------S-SS------------------S----------------------------S-------------
--------------------SSSSSSSS---------S------------------------------------------
------------------------------S---------S-------------------------SS-SS-SSS-SSS-
-----------------S----SSSSSSSSSSSSS------------------------------------S--------
---------------S----------------------------------------------------------------
----------S----------------------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_599
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-------------------CACGAGCGCTGTTTTTCACA-----------------------------------------
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>reverse_2322
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-AACCCATGCTCAGAACCGTT-----------------------------------------------------------
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