>input_sequence_73572
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----------TTAAGTTCTAGTAAAATGGCGAAAA---------------------------------------------
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--------------------------------------------------------------------TCTCCTTTGCTT
CAACCTTTCTCCTGTTGCCCCTTCTGATCATTCTACTTTCAACCATTCATAAACCTACAACATATGCCAAGTGTATACCA
CCGCCTTGCCAAGGAAGTTAGTATTGCACCTAGCACCCTTCTTTGTTCTTACAATTTGCATCATATCCCCATTGAACTTT
TTTTATTTTGTGTTTGGACCCATTTTTATTTTTTGTTGGAGTTGAACTTTCAATTATCCAAGAAATAACCCATAATTTCC
ATTTCTTTACCATACAGAACAAAGTTGGCCAGAGCTCATTGGGAAAGACTCAAACACGGCGTACAATTGTATAAGGCGCG
AGAACCCCCAAGTGAATAATATCACGTTCTTGATTTCTGATGCTCTTCGTCCTAGGGCGGACAATGGCATGTGTTGCAAC
CATGTGCTTTTGGTGATAGGAAATATCCCCTCCGGTGGTGATGGTGTCATCAAGGTGCCACATGTTGGATAGTACCATTC
TCTACTTTTTTTATTGTAATTTGATCAATAAAGTCTTTGGTGTGTATGCACTTTTCTCCATTTCATTTCATACAATTCTT
ATATATCCCAAACAACCAAATTACTTTCTCA-------------------------------------------------
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>chr3B_1_TraesCS3B01G009700
GGCCCAAAGCACCAACTGTGAATGGGCCTAAAACACCATGGGCCCCTAAAGGGCCAAAATCAGGGCTCGCTGATAACGGC
TAATCACCATTGGCCGCACACTGGCCGATTGTGGAAATGGTCCATGGACCGAATATATAACGGGTCATGAATGGACCAAA
ATCAGAAGCAACACGGGCCGTTAACGGGTCGAATGGTGTGACGGATCAAAAATAGCCCAAAAGCAACACGGGCTGTTAAT
GGACTCAAAGCCGTAATGGGCCAAAAATGGCGCGAATGTAACACATGCTGTTAAATGGAACAAAAGGCACGAGTGGGCAA
CAAAAATGCCCTAGACGCAACACAC-CGGTAATGGAGCAAAAGGTGCGAATGCCCAAAAACGGTCTGGACATAACATAGA
TAGTAAATGGGCCAAAATACACCACGGGACAGAAATGGCCAAGACACACGACAGACTGTAAATGGGTGCAAATATTCCAC
GGGACGTAAAAAGTATTAACGGCACTATGGGTCTTAAACGGATCGGAATACACAAAAGGCCTGAAATGGCCCGGAAACAT
CACATTCTTTAATTGGCCCAAAATACATCATGGGTCGTAAAAGGTCCGTGAAGCAGCATGGGCAGTGAAAAGCTCGAAAG
CAAGTACCGGTCAAAAAAGAACGAAAGGCTCGAAAGTATGT---------------------------------------
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-----ACTATGTGGAACACGTGAATCCATGCGGTGTACCAATGAATAATTAATAACAACATCAATTGAATATATCTTATA
TCTTTCTTCATTCAATAGCCTACATTCAGTGCATATTGATTTATTGCTTGTTATTAGTGTAAATACACAAACAATCAATG
GACGCATTAATTAAAAATATATCCCATTAATGCAGTGCTCTATAACTAGAAACAATCAATGACAGCATTAATTGAAAACA
TATCCCATTCGCAATTGATTGTC----CTTGCTTTGGCGATCTATAACTAGAAAGCCCCCTCCCCAGACAATATTCTAAA
C-AGGAAAGATTAAGTTCTAGTAAAATGGCGAAAA---------------------------------------------
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--------------------------------------------------------------------TCTCCTTTGCTT
CAACCTTTCTCCTGTTGCCCCTTCTGATCATTCTACTTTCAACCATTCATAAACCTACAACATATGCCAAGTGTATACCA
CCGCCTTGCCAAGGAAGTTAGTATTGCACCTAGCACCCTTCTTTGTTCTTACAATTTGCATCATATCCCCATTGAACTTT
TTTTATTTTGTGTTTGGACCCATTTTTATTTTTTGTTGGAGTTGAACTTTCAATTATCCAAGAAATAACCCATAATTTCC
ATTTCTTTACCATACAGAACAAAGTTGGCCAGAGCTCATTGGGAAAGACTCAAACACGGCGTACAATTGTATAAGGCGCG
AGAACCCCCAAGTGAATAATATCACGTTCTTGATTTCTGATGCTCTTCGTCCTAGGGCGGACAATGGCATGTGTTGCAAC
CATGTGCTTTTGGTGATAGGAAATATCCCCTCCGGTGGTGATGGTGTCATCAAGGTGCCACATGTTGGATAGTACCATTC
TCTACTTTTTTTATTGTAATTTGATCAATAAAGTCTTTGGTGTGTATGCACTTTTCTCCATTTCATTTCATACAATTCTT
ATATATCCCAAACAACCAAATTACTTTCTCAAACAGGAGACTGAAAGAACATGAAAATATAAGAAGGTTGTTCTAATCCA
ATATTGTACATCAAATCAAAACCAAAGGAAGATCGCAGGCATGCTAAAAGGTTAACTATTTAGTATGGGCCTGACTATAG
GTAAGCCTCCTTATATTTTATTTTTGTCAAGTCCAATTTGGACCATTGGATTAGCTTCAACAATCGTTATTCTTCCATCT
TTCTCTAGCTTTCTTCCTTCTCGAATCGTTCTTCCTCCACTGTTCGCCTCCGAGTTTCCTACCATCCCCTCCTTCGAGTG
GTCTATAGACCTGAATGTGATTTTTATTGCTTATGTTGTTCTTTGTACCGCCTTGATAGATAATGAATATATCAGAAGTT
CTCAACAACAAAAA--ACTTTTGGGAACAGTGGTTATGTTCGTTAAGGTGAACTGGCTTAACAAGTTGTTAGCTTGGCC-
-CACCCTTGTAAAGACTGATATCGACAAAAGTCCGATTGTCATGGAAGCCGGTGAGGATTTGCTCAATCCTAGTGAGTAT
GAGGTATTCTTTGGAATCAACATAGTCATCGTATCCTCATCTGTCCACACGCCAAGAGAATGATGAGTAACTTGAAGATG
CTTGTTGTCTGCATTATAAATCATCGTATACAAAATTGCGCACCCCAAACT-AAATAAATGATAGAAGGTTAAAGTAATT
AGCAGATTTTTTTATAGAAGGTACACTTGCATAATAAAACACACACATTGTTA-TTTTAATCTACATAACTTGCATAATA
TCGAAAGGGATACTATAAATTTAAAGTGAGCATCTACAGCCAGACCACTCATATCCTCCGCAAACGTCCGGACGGACAGC
CTGGTCATTGTTCGTACAGGAGAGGGAGAAGAAAAAAGCCACCCAACTGGACCCCCACTTTGTCCCCATATGTCCGTGCT
GTCCGCAAATCACCATATCCAAGGCATATATGAGAAGGATATCGGGATTTTTCTGGGTGTGTCCAGGCAGGTTGCCA
>chr3D_82
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-AAACACCATGGGCCGCATACTGGCCGATTGTGGAAAGGGCCCATAGACCGAATATATAACGGGTCATAAATGGACTGAA
ATCAGAAGCAACACGGGTTGTTAATGGACCGAAAGGTGTCACGGATCAAAAATAGCCCAAAGGCAACACGCGCCGTTAAT
GGACTCAAAGCCATAACGGGCCAAAAATGGCGCGAAAGCAACACATGCCGTTA-ATGGACCAAAAGGCGCGAATGGGC--
CAAAAATGCCCTAGACGCAACACAGTCGTTAATGGACCGAAAGGTGTGAAGGTCAATAAACGGTCCGGACACAACATGGA
CAGTTAATGGGCCAAAATACACCATGAGCCAGACATGGCCAAGACACACGACTGGCCGTAAATGGGCGGAAATATTCCAT
GGGACGTAAAAAATATCAACGACACTATGGGTCTTAAACGGATCGGAATACACGAAAGGCCTCAAATCGCCCGGAAACAT
CACCGGCTGTAATTGGCCTGAAATACGTCATGGA----------------------------CAGTGAAAGGCTCGAAAG
CAAGTACGGATAAAAATAGAACGAGAGACACACATGAGCCAAAAGTCTCAATGGGCTAGAACCATATTCGATGGCCCACG
TGTCGTCGTTCATAGGCGCATATCATCCGTTGAGTGGCGACCCTTCCAACGAAGAGCTGACGCGTGGTTAAGTTATCGAA
CGAGAAGCCGACACGTGGAGGATCGTCATTTGATGTACCATGATAAAAAAGAGAAATAATGCAGGCGCCCAGCCACTCAT
TCATCACTATGTGGAACACGTGAATCCATGCGGTGTACTAATGAATAATTAATAACAATATCAATTGAATATATCTTATA
TCTTTCTTCATTCAATAGCCAACATTCAGTGCATATTGATTTATTGCTAGTCATTACTTTAAATATACAAATCATCAATG
GCCGCATTAATTGAAAATATATCCCATTAATGCGGCGCTCTATAACTAGAAACCATCAATGGCCGCATTAATTGAAATTA
TATCCCATTCGCCATTGATTGTC----CTTGCTTTGGCGCTCTATAACTAGAAAGCCCCCTCCCCAAACAATATTCTAAA
C-AGGAAAGGTTAAGTTCCAATAAAATGGA--------------------------------------------------
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---------------------------------------------------------------GAAAAGCTCCTTTGCTT
CAACCTTTCTCCTGTTGCCCCTTCTGATCATTCTACTTTCGACCATTCATAAACCTGCAACATACGGCGAGTGCATACCA
CCGCCTTGCCAAGGAAGTTAGTATTGCACCTGGCACCCTGCTTTGTTCTTACAATTTGCATCATGTCTCCATTTAAC-TT
TTTTATTTTGTGTTTGGCCCCAATTTTATTTTTTGTTGGAGTTGAACTTTCAATGATCCAAGAAATAACCCGTAATTTCC
ATTTATTTACCATACAGAACAAAGTTGGCCAGAGCTCATTGGGAAAGACTCAAACACGGCATACAATTGTATAAGGCACG
ATAACCCCCAAGTGAATAGCATCACATTCTTGATTTCTGATGCTCTTCGTCCCAGGGCGGACAATGGCATGTGCTGCAAC
CATGTGCTTTTGGTGATTGGAAATATCCCCTCCGGTGGTGATGGTGTCATCAAGGTGCCACATGTTGGATAGAACCATTC
TCTGCC-TTTTTATTGTAATTTGATCAATAAAGTCTTTGCTGTGTTTGCACTTTTCTCCGTTTCATTTCATACAGTTCTT
ATATAGCCCAAACAACCAACATACTTTCTCAAACAGGAGACTGAAAGAACATGAAAATATAAGATGCCTGTTCTGATCCA
ATCTTGTACATCACATCAAAACCAAAGGAAGACC----GCATGCTAAAAGGTTAACTATTTAGTATGGGACTGACTATAG
GTAAGTCTCCTTATATTTTATTTTGGTCAAGTCCAATTTGGACCACTCGTTTAGCTTCAACAATTGTTATTCTTTCATCT
TTCTCTAGCTTTCTTCCTCCTCGAATCGTTCTCCCTCATTTGTTCGCATCCGGGTTGCCTACCATCCCCACCTTCGGGTG
GTCTATGGACATGAATGTGATTTTTATTGCTTATGGTGTTCTTTGTACCACCTTGATAGATAATGAATG-ATCAGAAGTT
TTCAACAACAAAAAATACTTTTGGGAACAGTGGTTATGTTAATTAAGGTGAACTGGCTAAACAAGTTGTTAGCTTGCCCA
TCACCCTTGTAAATACTGATATCCGCAATAGTTTGGTTGTCATGGAAGTTGGTGAGGATTTGCTCAATCCTAGTGAGTAT
GAGGTATTCTTTGGAATCAACATAGTCATCATATCCCCATCTGTCCACACGCCAAGAGAATGATTAGTAACTTGAAGATG
CGTGATATCTGCATTATAAATCATCGTATACGAAATTGCGCATGCCAAACTGAAAAAAAAGATAGAAGGTTAAAAAAATC
AGCATATTTTTTTATAGAAGGTAAACTTGCATACTAAAACACGTCCATGGCTATTTTTAATCTACATAACTTGCAAAATA
TCCAAAGGGATACTATAAATCTAAAGTGAGCATCTACAACCGGACCACTCATATCCTCCCCAATCGTCCAGCCGGACAGC
CCGATCATTGTCTGGCATAG-GAGAGAGAAGAGAAAGGCAT-CCAACTAGACCCCCACTTTGTCCCCATATGTCCGTGCT
GTCCACAAATCACCATATCCATGGCATATATGGGAAGGATATCAGGATTTTTGTGGGTGTGTCCGGGCAAGTTGCCA
>chr3A_885
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-------------------------------------------------AAATCAACAATGGCCACATTAATTGAAAATA
TACCACATTAATTAAAGATAGAATGTACTTGCTTTGGGGTTCTATAAATAGGAAGCCCCCTCCCCA-ACAATATTCTAAT
ATAGGAAAGCTTAAGTTCTAGTAAAATGGCGAAAATCTCCTTTGCTTCATCCTTTCTCCTGTTGCCCCTTCTGATATCTT
GTGATGATGCTAATCCACATTAAGCTTGAACAAATAACTGCCTATCTCCTAACATGAACGACTTAACCCAAACTTTGTTT
CCTAGAACGTATATGGAAGACATGAATCCATACGGTGTACCAACGAATAATTAATAACAATATCAATTGAATATATCTAG
TATATTTCTTCATTCAATAGCCAACATTCAGTGCACATTGATTTATTGCTAGTTATTGTAGATACACGGACCATCAATGG
GCGCATTAATTGAAAATATGTCACATTAATTAAAGATAAATTATCCTTGATTTTTTTTTGCGGGAAAGGAACTTTTCATT
GATCAACTATGATGATTACATTCAGATTCAACAATGCTAGCTATCTCCCTAGGGGAATTCCGGAGCCAGCATGCCGTGCG
CTGTTGCGAGCGACCCATACAAGCTAGGGTGTGGCTCGCCAAATTTGCGTGCCTGCTGATCTTAGCTAGACTAATGTTCC
TTTCTTGAGCCAGAACTCTTCTGATCTCATTAACCCGGTACGCATACCTCGACCGGTCTTGATTTGGGGTTCTATAACTA
GAAAGCCCGCCCCCTTCCCCAACAGTATTCTTAACAAGAAAGATTAAGTTCTAGTAAAATGACGAAAATCTCCTTTGCTT
CATCCTTTCTGCTGTTGCCCCTTCTGATCATTCTACTTTCGACCATTCATAAACCTACAACATATGCCGAGTGTACTCCA
CCGCCTTGCCAAGGAAGTTAGTATTACACCTAGCACCCTTCTTTGTTCTTACAATTTGTGCCATGTCTCCATTGAAC-TT
T-TTATTTTGTGTTTGGCCCCAAATTTATTTTTTATTGGAGTTGAAC-TTCAATGGTCCAAGAAATAACTGATAATCTGC
ATTTCATAC----ACAGAACAAAGTTGGCCAGAGCTCGTCGGGAAAGACCCAAACACGGCGTACAATTGTATAAGGCATG
ATAACCCCCAAGTGAATAACATCACATTCTTGATTTCTGATGCTCTTCGTCCCAGGGCGGACAATGGCATGTGCTGCAAC
CATGTGCTTTTGGTGATTGGAAATATCCCCTCTGGTGGGGATGGCATCATCAAGGTGCCACATGTTGGATAGAATCATTC
TCTACTTTTTTTATTGTAATTTGATCAATAAATTATTT------------------------------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
S--S------S-------S------------------S--S----S----------------------S-------SS--
-----------------SS-----S--SS----S-----S---------------------S--------S--S------
------------S---S-------------------S-S---------S----S-----S--------S---S-----SS
------------------------S---S-------S-S-------S---S-S-S-S--------S-----S-----S--
S---S-------------------S-S-S----S------------------S-S-S---------S-S----------S
------------S---S----S-------------------------------S--------S----S------------
---SSS--S---------SS------S------SSSSSSSSSSSSSSSSSSSSSSSSSSSSS--------S---------
-------S-S-S----S-------S--S-S-SS-S-SSSSS---------------------------------------
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--------------------------------------S-------------------S---------------------
--------------------S---------------------------S--S----S-S------S-----SS-------
-S----------S--------------------S-S-----------------S-------S-S--------------S-
------------S--------------------------S--------------------------S-------------
---------S----------------------------------------------------------------------
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----------------------------------------S---------------------------S-----------
----------------------------------------------------------------S--S---------S--
-----------------S----S-------------------------------S-------------------------
-----------------------------------------------------------------------------S--
-S-----------------S-----S--------------------------S--------------------S------
-----------------S------------------------------------------------------S-------
---------------------------------------S-----S-------------S--------------S-----
-----S-------------SS-------------------------------------------S-SS------S-----
--S----------S------------------S-SSSS-------------------------------S----------
-----S------------------S--------------------S-S-S--------------S---------S-----
------------------S-------------S----SSS-------S----S---S------------S------S---
------S---S------------------------S-------------S------------------SS----------
S---------------------------------------SS----------------S-----------------S---
-------------S---------SS---S---SS-S------------SS------------------------------
------------------------------S-----S---------------------------S---------------
-S--S-S------------------------S----------SS-----------S---S--------------SS---S
----S------------------S---------S--------SSS---S-S------------------------S----
--S-----------------S-----------------S--S-----------------S---S-----S-S--------
-S-S-------SS-SSSSS-S---S-------S---S--SSS------S-------------------------------
----S----------------S----------S----------S--------S-----------S----S-------
>forward_78
----------------------------------------------------------ATCAGGGCTCGCTGATAACG--
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>reverse_2777
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--------------------------------------------------------TCCTACCATCCCCTCCTTCG----
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