>input_sequence_73564
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-----------------------------------------ATGGCGTGGAGGAGGGCGTCGGTGCTGGCCGCGCTCGTG
CTGGTGGCCGCGGCGGCGTGCGCCGACGCCGGGGAGAGCTACGGCGCGTCCATGTTCACGGTGACGGGCACCGTGCTGTG
CCAGGACTGCACCAAGAACTGGAACGCCTACGCCTACAGCGCCAAGCCCATCGCCGGTACGGTTCGCCTGAACCCTTCTA
TACTTATCTCTACC----ACGTACCAGCCATCGCTCCTCGCCGGCGACCGGACGACGGCATGATCGACGAATATGTATGC
TGTGATGATTTGCAGGCAGCGTGGTGGCGGTGACGTGCCTGGACGAGCACAGGGGGCGGACGGTGACCCACAGCGTGGAC
ACGACGGACGAGGAGGGGGTTTTCAAGGTGGAGGTGCCGTACGCCCACGACGGCGGCAGCTGCCGCCTCGACCCGGCCCA
CTGCCTCGTCCGCATCGTCAGGTCGGGGGACAAGGGCTGCGCCGTGCTCACCAACTTCAACGGCGGCACGACCGGCGAGA
AGCTATTGCGCCCCTCGAAGGTCTCCTCCACCGAGGTCGGCTACTCGGCAGGGCCCTACTACGCCACCGTGCCGCAGTGC
GACGTCGACGGCGACGACAAGAGCTGCTCCTGA-----------------------------------------------
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>chr1D_1_TraesCS1D01G209800
GGCGCGGACGAGGTCGACGGCGTCGGCGAGCAGCGCGCGCGCGCGCGCCAGCGACGGGAGCCCCGTGAGCGTGGAGAAGT
TGCAGCAGACGTAGACGGGCACGAGGAAGAGGTCGGCCTCCTCGGGGCGCAGGCCCGCGCGCCGCTGCCGCAGCAGCAGC
GCCTCGTGCACGGCCACCTCGGCGGCGAAGAGGTGGCGCGCGCACCGCGCGTCGGCGGCCGCCCAGCCCCGGTTGAAGCG
CGGCGGCAGGTCGTAGGCGTAGATCCGGACGCCGGGGCGGGGCTCGGAGCTGGGGCCGCGGAGGGAGGGGGGCAGCGCTG
GGAGGAAGAGGTAGGCGGAGAGGGCTAGCCAGAGGAGCCACCGCCACCTGTAGAAGTGGCGCTTCCTGAGCCTGTCGAGG
AGGGGGAAGTGGCGCGGCTTGTGGGCTCTTGCTGTCTTCACCTTCGGGTCTCTCATGGCGGGAGAGGGCTTCGTCCGATC
GAGCATCGGAGCCAAGTGTTAGGCTGCGGACAGTAGCTCCAGTTCGGATTCTTCTCCATTGCCCCCTCGGATTTTCGGCT
CGGCGGCGCTCGCGACGGCCATTGCTGGCGGAGCTTTGACTCTTGGAGTTGAGAAGCTGACAACAGTGAGGGGAAAGTGA
GCGAAAGGGAGAGGAGATGCGTGTGATGACCAGCCACTGGCATGTGGGACCGTGAGCTGTTGGGTCGTCTGGCCCACGTG
TCGGCGTCACATCAGCGCGTGCGGCGTCCACGTCGGTGCTGTCGTGGCTGAAACAAGATGAGGTTATTCTACTCTGCCGT
ACCGACACC-GGAAAATGGCGCGCACGTCGTCGTCAGCCTATAGCGAGTTGGGCTCACGTCGACCGCCATGGCCAGGAGG
CCACTCCACGATAAAGCCGCCGCGCGCTAGGTTGACACACAGCTCGCTCGATCGACCCCATCTCACCGGCCCATCCATTG
CATTCCATCGAGCTAGCTCGCTAATTGGTCTTTCGTCGACGATGGCGTGGAGGAGGGCGTCGGTGCTGGCCGCGCTCGTG
CTGGTGGCCGCGGCGGCGTGCGCCGACGCCGGGGAGAGCTACGGCGCGTCCATGTTCACGGTGACGGGCACCGTGCTGTG
CCAGGACTGCACCAAGAACTGGAACGCCTACGCCTACAGCGCCAAGCCCATCGCCGGTACGGTTCGCCTGAACCCTTCTA
TACTTATCTCTACC----ACGTACCAGCCATCGCTCCTCGCCGGCGACCGGACGACGGCATGATCGACGAATATGTATGC
TGTGATGATTTGCAGGCAGCGTGGTGGCGGTGACGTGCCTGGACGAGCACAGGGGGCGGACGGTGACCCACAGCGTGGAC
ACGACGGACGAGGAGGGGGTTTTCAAGGTGGAGGTGCCGTACGCCCACGACGGCGGCAGCTGCCGCCTCGACCCGGCCCA
CTGCCTCGTCCGCATCGTCAGGTCGGGGGACAAGGGCTGCGCCGTGCTCACCAACTTCAACGGCGGCACGACCGGCGAGA
AGCTATTGCGCCCCTCGAAGGTCTCCTCCACCGAGGTCGGCTACTCGGCAGGGCCCTACTACGCCACCGTGCCGCAGTGC
GACGTCGACGGCGACGACAAGAGCTGCTCCTGATCGAGTGACCTCTCGGTCT----CTGCGCGCTGGAACGATCGGTTCT
GTCGTTTTGGTTTATGTTTTCTACGGGATCTGGATGGTTCGACGCTAGCATACATGTGCGTCCTTGTTTTGCTTCTAAAA
TGTCCGTGCGTGCGATTTTTGTAACATGATCTGATTTGTACTGTCAATGACTGTTGTTTTTT--GAGCTGGTCTGTGTGT
TATGTTTCACAACATCTGTTATACCTAG---TAGTCATAAATTAGCTAAGTGCGTCCCCAACCCTCAAACTGTTCGGATG
ACCGGGCCAACGCGGCAGTGAAGCTGCGCGTCGGCATTGAAGTGGCGCGCCGGCCAAAAGCGCCGTTGGCGCCATGCCCA
GGTGTACGCGCCTTCTCCGTCCTTTAAACAAGCGCAGTTGCCGAGGAACCTACCCCGACGCCCACATGCGAACGCCACCC
GTTCGTTTGTCTGCTAGCAGACATTAAACACCCTGCCGCTTGGCCTGGTATCCGTCTGCTATTTAAACGTGGCCAGGCCG
GCAACATCGGCATCACACCTCCGCTCCCGGTCTCCTCTCTGCACCACATCCGCCATGGCCTCGAGCTCCAAAGCCCTATG
GGAGAGCCTACCAGACGAGCCGAATCAGGAGCTCTCTGGCATTGCAGCCGACTGGATACAAGTTGGCTTGTCGACGAGCT
CTCCGGAGTGCAGCGGCGTGGACAAGCCAATGGAAGAGGCGTCCAACGATGAGTAGGCGCCACCGCCCTCGCCGGTCCAT
GCCCCGTATCAGTGTCCGAACCCTGTGTTGCGGCTACCCAAACGTGGGGCAGCACCGCGGCACGACCACAAGCGACGTGC
TGGGACAACGTGACTAGGGGTACTACCACGGATACGACGCGATGATCTTGGGGGAGGCTCGAGTTGCTGCAACCAGCGAC
GTCGCGGCGGCCACCGCAGCTCGGTGACGGGTAGAGCGACGTCGATGGCCAAGTCGCGAGACATGCGGGTGTGTGGAGAT
GG
>chr1A_1
GGCGCGGACGAGGCCGACGGCGTCGGCCAGCAGCCCGCGCGCGTGCGCCAGCGACGGGAGCCCCGTGGGCGTGGAGAAGT
TGCAGCAGACGTAGACGGGCACGAGGAAGAGGTCGGCCTCCTCGGGGCGCAGGCCCGCGCGCCGCTGCCGCAGCAGCAGC
GCCTCGTGCACGGCCACCTCGGCGGCGAAGAGGTGGCGCGCGCACCGCGCGTCGGCGGCCGCCCAGCCCCGGTTGAAGCG
CGGCGGGAGGTCGTAGGCGTAGATCCGGACGCCGGGGAGGGGCTCGGAGCCGGGGCCGCGGAGGGAGGGGGGCAGCGCCG
GGAGGAGGAGGTAGGCGGAGACGGCCAGCCAGAGGAGCCACCGCCACCTGTAGAAGTGGCGCTTCCTGAGCCTGTCGAGG
AGGTGGCAGTGGCGCGGCTTGTGGGCTCTTGCTGTCTTGAGCTTCGGGTCTCTCATGGCGAGAGAGGGCTTCGTCCGATC
GAGCATCAGAGCCAAGTGTTAGGCTGCGGACAGTAGCTCCAGTTCGGATTCTTCTCCATTCCCGCCTCGATTTCCCGGCT
CGGCGGCGCTCGCGACGGCCATTGCTGGCGGAGCTTTGACTCTTGGAGTTGAGAAGCTGAGAACAGTGAGGGGAAAGTGA
GCGGAAGGGAGAGGAGATGCGTGTGATGACCACCCACTGGCATGTGGGACCGTAAGCTGTTGGGCCGCCTGGCCCACGTG
TCGGCGTCACATCAGCGCGTGCGGCGTCCACGTCGGTGTTGTCGTGGCTGCAACAAGAGGAGGCTATTCTACTCTGCCGT
ACCGACACC-GGAAA-TGGCGCGCACGTCGTCGTCAGCCTATGGCGAGTTGGGCTCACGTCGACCACCATGGCCGGGAGG
CCACTCCACGATAAAGCCGCCGCGCGCTAGCTTGACACGCAGCTCGCTCGACCGACCCCATCTCACCGGCCCGTCCATTC
CATTCCATCGAGCTAGCCTGCTAATTGGTCTTTGGTCGACAATGGCTTGGAGGAGAGCGTCGATGCTGGCCGCGCTCGTG
CTGGTGGCCGCGGCGACGTGCGCCGACGCCGGGGAGAGCTACGGCGCGTCCATGTTCACGGTGACGGGCACCGTGCTGTG
CCAGGACTGCACCAAGAACTGGAACGCCTACGCCTACAACGCCAAGCCCATCGCCGGTACGGTGCGCCTGAACCCTTCTA
TACTTGTCTCTAGCACGTACGTACCAGCCATCGCTCCCCGCCGGCGACCGGACGACGACATGACCGACGAATATGTATGC
TGTGATGGTTCGCAGGCAGCGTGGTGGCGGTGACGTGCCTGGACGAGCACACGGGGCGGACGGTGATCCACCGCACGGAC
ACGACGGACGAGGAGGGGGTCTTCAAGGTGGAGGTGCCGTACGCCCACGACGGCGGCAGCTGCCGCCTCGACCCGGCCCA
CTGCCTCGTCCGCCTCGTCAGGTCGGGGGACAAGGGCTGCGCCGTGCTCACCAACTTCAACGGCGGCACGACCGGCGAGA
AGCCGTACCGCCCCTCGCGGGTCAGCCCCACCGAGGTCGCCTACTCGGCAGGGCCCTACTACGCCACCTTCACGCAGTGC
GACGTCGACGGCGACGACAAGAGCTGCTCCTGATCGACTCA--------TCTCTAGCTTCGCGCTGGAATGATCAGTTCT
GGTGTTTTGGTTTATGTTTTCTACGGGATCTGGATGGTTCGACGCTAGCATACATGTGCGTCTTTGTTTTGCTTCTAAAA
TGTCCGTGCGTGCGATTTTTGTAACATGATCTGATTTGTACTGTCAATGACTGTTGCTTTTTTTGAGCTGGTCTATGTGT
TATGTTCCACAACATCTGTTATACTTATACCTAGTCATAAATTAGCTAAGTGCATCTCCAACCCTCCAACCGTCTGGATG
ACCGGACCAACACGGCATTGAAGCCGCGCGTCAGTATTGAAATGGCGCGCCGGCCAAAAGCTTCGTCGGCGCCGTGCCC-
--TGTACGCGCCTTCTCCATCCTTCAAACAAGTGCGGGTGCCAAGGAACCTA-CCCGACGCCCACATGCGAACGCCACCC
GTTCGTCTGTC--------------------------GCTTGGCCTGATATCCGTCTACTATTTAAACATGGCCAGGCCG
GCAACAGCGGCATCACACCTCCGTTCCCGGTCTTCTCTTTGCACCACATCTGCCATGGCCTCGAGCTCCAAAGCCCTATG
GAAAAGCCTACCGGACGAGCCGAATCAGGAGCTCTCTAGCATTGCAGCCGACTGGATACAAGTTGGCTTGTCGACGAGCT
CTCTGGAGTGCAGCGACGCGGATAAGCCAATGGA-GAGGCGTCCAACGATAAGCTGGCGCCACCGCCCTCGCCGGTCCAT
G-------------------------------------------------------------------------------
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>chr1B_1
GGCGCGGACGAGGCCGACGGCGTCGGCGAGCAGCCCACGCGCGTGCGCCAGCGACGGGAGGCCCGTGGGCGTGGAGAAGT
TGCAGCAGACGTAGACGGGCACGAAGAAGAGGTCGGCCTCCTCGAGGCGCAGGCCCGCGCGCCGCTGCCGCAGCAGCAGC
GCCTCGTGCACGGCCACCTCGGCGGCGAAGAGGTGGCGCGCGCACCGCGCGTCGGCGGCCGCCCAGGCCTGGTTGAAGCG
CGGCGGCAGGTTGTAGGCGTAGATCCGGACGCCGGGGCGGAGCTCGGAGCTGGGGCCGCGGAGGGACGGCGGGAGCGCCG
GGAGGAAGAGGTAGGCGGAGAGGGCCAGCCAGAGGAGCCACCGCCACCTGTAGAAGTAGCGCTTCCTGAGCCTGTCGAGG
AGGCGGCACTGGCGCGGCTTGTGGGCTCTTGCTGTCTTGAGCTTCGGGTCTCTCATGGCGGGAGAGGGCTTCGCTCGGTC
GAGCATCAGAGCTAAGTGTTAGGCTGCGGACAGTAGCTCCAGTTCGGATTCTTCTCCATTCCCGCCTCGATTTCCCGGCT
CGGCGGCGCTAGCCACGGCCATTGCTGGCGGAGCTTTGACTCTTGGAATTGAGAAGCTGACAACAGTGAGGGGAAAGTGA
GCGAAAGGGAGAGGAGATGCGTGTGATGATCACCCACTGGCGTGTGGGACCGTAAGCTGTTGGGTCGTCCTGCCCACGTG
TCGGCGTCACATCAGCGCGTGCGGCGTCCACGTCGGTGCTGTCGTGGCTGAAACAA---GAGGCTATTCTACTCTGCCGT
ACCGACACCCGGAAA-TGGCGCGCACGTCGTCGTCAGCCTATGGCGAGTTGGGCTCACGTCGACCACCATGGCCGGGAGG
CCACTCCACGATAAAGCCGACGCGCGCTAGCTTGACACACAGCTCGCTCGATCGACCCCATCTCACCGGCCCGTCCATTC
CATTCCATCGAGCTAGCTCGCTAATTGGTCTTTGGTCGACAATGGCTTGGAGGAGGGCGTCGATGCTGGCCGCGCTCGTG
CTGGTGGCCGCGGCGACGTGCGCCGACGCCGGTGACAGCTACGGCGCGTCCAAGTTCACGGTGACGGGCACCGTGCTGTG
CCAGGACTGCACCAAGAACTGGAACGCCTACGCCTACAACGCCAAGCCCATCGCCGGTACGGTTCGCCTGAACCCT-CTA
TACTTATCTCTAGC----ACGTACCAGCCATTGCTCCTCGCCGGCGACCGGACGACGACATGATCGACGAATATGTATGC
TGCGATGATTTGCAGGCAGCGTGGTGGCGGTGACGTGCCTGGACGAGCACACGGGGCGGACGGTGATCCACCGCACGGAC
ACGACGGACGAGGAGGGGGTTTTCAAGGTGGACGTGCCGTACGCCCACGACGGCGGCAGCTGCCGCCTTGACCCGGCCCA
CTGCCTCGTCCGCATCGTCAGGTCGGGGGACAAGGGCTGCGCCGTGTTCACCAACTTCAACAACGGCAGGACCGGCGAGA
ATCTATTGCGCCCCTCGAAGGTCTCCTCCACCGAGGTCGGCTACTCGGCAGGGCCCTACTACGCCACCGTGCCGCAGTGC
GACGTCGACGGCGACGACAAGAGCTGCTCCTGATCGAGTCA--------TCT----CTTCGCGCTGGAATGATCGGTTCT
CGCGTTTTGGTTTACGTTTTCTACGGGTTCTCGATGGTTCCACGATAGCATACGTGTGCGTCTTTGTTTTGCTTCTAAAA
TGTCCGTGCGTCTG--------AACAGGATCTGATTTGTACTGTCAACGACTGTTG--TTTTTTGAGCTGGTCTATGTGT
TACGTTTCACAATATCTGTTATAT------CTGGTCATAAATTAG-----------------------------------
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>SNPs
-------------S--------------------S--------S-----------------------S------------
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------------------------------------------------------------------------------S-
-------------------------S------------------------------------------------------
---S--S-------------------------------S-S---------------------------------------
-------S----------------------------------------------------S--S-----SS--SS-----
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--------------------------------S--------------------S--------------------------
----------------------------------------------------------S----S----------------
---------------S--------------------------S----------------------S--------S-----
------------------------------S-----------------------------------------S------S
---------------------------------S------S-----S---------------S-----------------
---------------S----------------------------------------------------------------
--------------------------------------S-----------------------------------------
------------S--------------------------------------------S----------------------
---------------------------------------------------S--------------S----S--SS----
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---------------------------------------S-SSSSSSSS---------S----------S----------
-S------------------------------------------------------------S-----------------
--------------------------------------------------------S-----------------S-----
------------------------S--S-------------------------S--S---------S---S--SS-----
-----S-----S-----S------S-------S-S------S-------------------SS---S------S-----S
SS----------------S-----S-------S--S-S----S---------S---------------------------
------S----SSSSSSSSSSSSSSSSSSSSSSSSSS----------S---------S----------S-----------
------S----------------S---------S----S-----------S-----------------------------
-S-S--------S------------------------S------------------------------------------
---S-----------S--S---S-----------S---------------S--SS-------------------------
-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SS
>forward_439
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-------------------TGTGGGCTCTTGCTGTCTTC-----------------------------------------
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>reverse_2100
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-------------------GACATTAAACACCCTGCCGC-----------------------------------------
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