>input_sequence_73553
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-----------------------------ATGAA---GATGAAGCGATGCATCGTTCCTAGCATCCTGCTGATGCTTTCA
CTGGA---G---GCGGCCCTCCTCGTCGCCGGCCGCCCCTCTGTCGACGG------------------CGAGGTGGGTGC
CATTCTCCTGCCGAGCCAAGGCCAAGGTACGGTTGT-------------GCGCGCGTGAACTCAT---TTCT----CTAC
TTCATGGCTTCA-TCATGCG-------TCCATGAA-----GAAACTGACCTCAGCTTTGCTGAA----------------
-------------CAAGCA---GTCATGGCGGCGCCCAAGAGGCCGTGGAAGTGCTGCGACCGGGCGCGGTGCACCAGGT
CGATCCCGCCGATCTGCACCTGCATGGACGAGG----CTTTCGAGTGCGCCTCCACCTGCAAGGCATGCGTGCCGTCGAC
GCGCAACCCGTCCCTCCAGGTCTGCCAGGACCAGTTCGTCGGCGACCCGGGGCCCATCTGCCGGCCGTGGGAGTGCTGCG
ACTCGGCCGCGTGCACCAAGACCGACCCGCCGACGTGCCGCTGCGGGGACGAGGTCGAGCAGTGCGCTCCGACCTGCAAG
ACGTGCGAGCCGTCCACGTCGGACCCATCCCTCAACGTCTGCAAGGACGCGTACACCGGGGCCATCCCGCCCACGTGCAC
GC---CGCCAGAGGCTCTTGCCGCCGGCGGTAACTAG-------------------------------------------
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>chr3D_1_TraesCS3D01G033800
AATAAAGCTCTCACAATTTTCCCTCAAAAAAAGGCAAAGGGACACCTGATGGAACTCCATACCTGGAAATAGGAAAGTGT
GAGAAAGTGAACCATCTCGCTGGACATTCATCCAATGCTTTGTTCACTCAATCTAGCCTTTTAAAGCTTTTCCAAAACCA
GATTTGTGTTTTTAACTAGAGGCCCTCGATTGTCCAAACACCGCAAAATTTCCAATAGGTCCTTTCACAACTGAGCATCA
TTGATTCAAAAAAT--ATATCTGAATTATTTTTGATTTTTTTTAGTAATT-TTTCATTTTATTGTTCATCAGATGCAG--
------------AGACGCCAATTACCGCTATATGTGAGGTAATCTATGACATCCAAGTGTATAGATAGATCTTTGAGATG
GCTGTGGTCCATACCCTGGAGTAAACAGGCCTGCGTGGCACTGTTTCCCAACTTGACCCTCGAGAGACGACGAGAAGTGC
CGGCTTTTGAAACGATTTAGAATTAGC--------------------------TCTCATTTAG-ATGAG-AAATTACTAT
GTCTCATCTAACTTCTATAC---CGTTGAGTTTTACGCTGGGATTCGTAGGAATTTTGTTCTTTTTTTTTTGGTTGTTTG
TTAATCAAGTAGTGTAGGAGTTAGATGAGATTTTTGTTAATTCTCATCCAGCAAATCCGGATCTAACATTACTCACGAGT
GAAGAAGCGTGGTGTGCACGCAATGCATTTTAT---TCAGTCAATTCCGGACGTACCGTCACTTATCCTGTTCCATTGTC
AGCGTACATATCCATGCTACAATCAATGGAAAACGCGCATGTACGGTTTTAGTCAACACTTTGTCATCAATCTATAGCCC
TTATCCACACA-CATGTGATAGAGAGCTGCCATGTG--TGCGTATTCAAATCTGCTCGTTGCATTGCTAGCGATTTCCAC
GCGTTAGGT----GATCCATCGGTGTCACGAGGCTACATACACGGCTGGTCGCTAGCTA-----GCCAGCTT-----CAA
ACACACAAGCAAGCTCAGTAAGC-ACGCCATGAA---GATGAAGCGATGCATCGTTCCTAGCATCCTGCTGATGCTTTCA
CTGGA---G---GCGGCCCTCCTCGTCGCCGGCCGCCCCTCTGTCGACGG------------------CGAGGTGGGTGC
CATTCTCCTGCCGAGCCAAGGCCAAGGTACGGTTGT-------------GCGCGCGTGAACTCAT---TTCT----CTAC
TTCATGGCTTCA-TCATGCG-------TCCATGAA-----GAAACTGACCTCAGCTTTGCTGAA----------------
-------------CAAGCA---GTCATGGCGGCGCCCAAGAGGCCGTGGAAGTGCTGCGACCGGGCGCGGTGCACCAGGT
CGATCCCGCCGATCTGCACCTGCATGGACGAGG----CTTTCGAGTGCGCCTCCACCTGCAAGGCATGCGTGCCGTCGAC
GCGCAACCCGTCCCTCCAGGTCTGCCAGGACCAGTTCGTCGGCGACCCGGGGCCCATCTGCCGGCCGTGGGAGTGCTGCG
ACTCGGCCGCGTGCACCAAGACCGACCCGCCGACGTGCCGCTGCGGGGACGAGGTCGAGCAGTGCGCTCCGACCTGCAAG
ACGTGCGAGCCGTCCACGTCGGACCCATCCCTCAACGTCTGCAAGGACGCGTACACCGGGGCCATCCCGCCCACGTGCAC
GC---CGCCAGAGGCTCTTGCCGCCGGCGGTAACTAGCACGCACGCGCACGCGTTGGTGTGCACCATGATCGAGACGCTA
CGTCCCTACTCCTGCCATGCTGCTGCAGCAGCCTGCAGTTTGTGACTATACATAAAATAAAAAATGGACAAGCAATCATG
TAT-----------------------------------------------------------------------------
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------------------------------------------------------------------------AAGACAGA
GTGCTATTTAATCTTATCTTTTTAATAACTGAATGGTGCGGGTTTCTTCCGTTTCATGATGAAACGGCATGAACCATGAA
ACTGCATGAAACTTTCATCCACTTTGACCAAAGTCCTATTTCAAATATCAC----TTTAGCTACTTGTAAGTTGCCTGAA
TTTTGAATTTGGGTCGTTCAATTTCTTGGGCGTTGATTGTTGTTCTAAGATTCGTGCTTCATTATTTTTTTCATGAC---
---------------------------TCAACTGACCTCATATTTGGTTCAGTCGATTTGCTACTGGGCCGAAGCCCAGT
AAATGTGCGATCCAGCCCTCCTCTCTATCTGTTTGTTTATTTTCTGTTTTTATGTGTGTTTTGCATTTGTTTTTGGTTTT
TCTCTCTTACTTCATTTTACTTC-TATTTTGTGGGTATTTTTGGAATGTTGGGTGAGTGGAAATGTACTCACATAAATTC
TATGCAATGTCTCTGAAAATTACACTATTTTATTATTATCGCATGCTACAAAAAGTGAAAGTTTAAAGCGAAGTTGTGTG
CAAGTTTTTTGAAACTCTTTTGTTATCTTTCTTCATTAAACGGTAATACTATTGCTCCTAAGAAGGTAAGTGTCCAAATC
TTATTCAATCGCTGTTGGTGACCGAGAATTGGCTCGACTCTGAACCCTCGTTCCTGATCAGTAGCCTGATGACTGATGAT
CCCAGGAGCTCTTTTGTTTGAATAAAGCTCTCATGATTTCCCGCAAAAAAAAAATCTTATTCAATCGCTGCCGTACAGCT
AGGCTCACCAGCAGCTAGCGTAGTAGTGCTACAACATCAGACACGTCAGCTAGGCAGCTAGCACCGTACGTCCATCTCGA
ACAACAAACAGATATGAGAAT
>chr3B_35
----------------------------------CAAAGGGACGCCTGATGGAACTCCATACCTGGAAATAGGAAAGTGT
GAGAAAGTGAACCATCTCACTGGACACTCATCCAATGCTTTGTTAACTCAATCTAGCTTTTTAAAGCTTTTCCAAAACCA
GATTTC-TTTTTTAACTAGAGGCCCTTGAATGCCCAAACACTGCAAAATTTCTAATAGGTCCTTGCACACCGCAAAATTT
CTAATAGGTC----------------------------------------------------------------------
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----------AACCATTTTGAATTAGCAAATCTTGATTTGGGGTTTGTCTAGCTCTCATGTACAATGAG-AAATTAGTAT
GTCTCATCTAACTTCTA---CATTGTTGGGTTTTACGCTGGGATTCGTAGGAATTTTGTTCTTTTTTTATGTGTTTGC--
TTAATCAAGTAGGGTAGGAGTTAGACTAGAC-TTTGTTAATTCTCATCCAGCAAATCCGGATGTAGCGTTACCCACGAGT
GAAGAAGCGTGGTGTGGACGCAATGCATTTTATCCATCAGTCAATTCCGGACGTACCGTCAGTTATCCTGTTCCATTGTC
AGCGTAC----CCATGCTACAATCAATGGAAAACGCGCATATACGGTTTTAGTCAACACTTTGTCATCATTCTATAGTCC
TTATCCACGCA-TATGTGATAGAGAGCTGCCATGTT--TGCGTATTCAAGTCTGCTCCTTGCATTGGTAGCGATTTCCAC
GCGTTAGGT----CATCCATCGGTGTCACGAGGCTACATATACTGCTGGCCGCTAGCTT-----GCCAGTTT-----CAA
GCGCACAAGCAAGCTCAGTAAGC-ACGCCATGGG---GATGAAGCGATGCATCGTTCCTAGCATCTTGCTGATGCTTTCA
CTGGA---G---GCGGCCCTCCTCATCGCCGACCGCCCCTCTGTAGACGA------------------CGAGGTGGGTAC
CATTCTCCTGCCGAGCCAAGGCCAAGGTACGGTTG-------------GGCGCGCGTGAACTCCT---TTCT----CTAG
TTCATGGCTTCA-TCATGCATCCATGATCCATGAA-----GAAACTGATCGCAGCTTCACCACGTTAACTGAGGGCTCGC
AGTTGCAGACCAGCAAGCA---GCCATGGCGGCGCC---GAGGCCGTGGAAGTGCTGTGACCGGCCGCGGTGTACCAGGT
CCATCCCGCCGATCTGCACCTGCGTGGACGAGG----CGTTCGAGTGCGCCTCCACCTGCAAGGCATGCGTGCCGTCGAC
GCGGAACCCGTCCCTCCAGGTCTGCCAAGACCAGTACGTCGGCGACCCCGGGCCTATATGCCGGCCGTGGGAGTGCTGCG
ACTCGGCGGCGTGCACCAAGACAGACCCGCCGACGTGCCGCTGCGGGGACGAGGTCGAGCAGTGCGCTCCCACCTGCAAG
AGCTGCGAAGCGTCCACGTCGAACCCGTCCCTCAACGTCTGCAAGGACGCGTTCACCGGGGCCATCCCGCCCACATGCAC
GC---CGCCAGAGGCTCTTGCCGCCGGCGGTAACTAGCACGCGCACG----CGTTGGTGTGCACCATGATCGAGTCGCTA
CGTCCCTACTCCTTCCTTGCTGCTGCAGCAGCCTGCAGTTTGTGATTATACATAAAATAAAAAATGGATAAGCAATCATG
TACTCCCTCGATCCCAAATAAGAGCATCTACAGCCGGACTTGGCAAATTCAGGCCCTCAAACGCCCGCGGACACGTGACG
TCTCGACGTGTCCGCGGACAATGACCGGGCACACCTTAAATTGTGTCGTCCACATCCGTGTCTCTCATATCCGAACCCCT
ATATCCATACTATATCATGCAACGTCGATCAAATTACGTAGATTAGCTCCCGACATAGAAATTGCAAAATGGTTCACCAA
AAGATCCACCAAAGTTCACATAAACGACGGACAACATTATACTACATCTAAAACTTGAAATTAAAATCAACCTCACCACT
TCCGGGCCGTCCCTTTCACCTTCTGGTCGCCGGCATAGCTGTAACCATTGTCGGCTGGTGGAGGATCGTCCGATTCGTCG
GAGGAGGAGCCACCGTCGTCGTCGGAGGAGGAGTCGATGATGACGAGGCCCTTGACGCACTGGACAACCCGGTCCTGCTG
GCGCCTGAGCTTGGCCAGCCGAGCTGTCTCCTTCGCCTTCTCCAATGCTCCCGCTCGGACTGCTCGATGGTAAGCCAAAG
ATCCTTAGCGTTCTTCCGGCGGAGCAGCCGAGCGTCCGTCTCCGCCGTCGTAAGCGACCGGCAGTAGACCCACGTGAGGG
GTCGCTGGTCCTCCTCAAGCTCCGCCGGTAACCTACGCCGGCGTTGGACAGAGCTCTCCACAGCCTCCCTCTCCCTTGCC
CGCTGCCTCTCGCGGCGGGCGGCGCGCGCCTCCGACTCTGGCGTGCGCATCCGGGCGGGCGGGGAGGGCACAAGCACCCA
CCGCTGCCCACGAGGGGGAGTAGCAGCCAGCAAGGTGAGGGGACGGCGTGGGGAAGCAGCAGCCGACGAGGCAAAGGGAC
AGCTTGGGGGAGGCGCCGATCGCGCTGGCCGCCTGTCAGAGCTGCGCATGGGCCGGGAGGGGCAAGTGTCGACGTCCGTG
ATGCGCCGACGGGGAAGCGGCGGCTTGGCGAGGCTGCAGAACCGGAGCTGCCCCCGGTGTCCACCTTGGATAGCTCCAAG
GCGACACGGAGGGCAAGCTCATACTTTGGATCCACATCTTCATCGGAGAGGCTGCCGGAGCTTGACATTGCGCCGGATTC
GATCGGAATCGGTGAGGGGAGAGGAGAGGACGGAGTGAGAGAGGAGAGTGAAGTGAGCTCGAGTTTCGGACCGACGAGGT
CGATGGGCTTTTTCGTGGGGCATCCATGGGGTCCGTAGTGGGCTGGGCTTGTCAGGCGGACGCGCCCGGACCACCCCATA
CCCGCCCCACATTCGGGTTGAATATAGGGGTGTCGGTCAGTCCGGACGTTTGAGGCCTGTTTGAGGCGTCCGTCTAGATC
GAAAAAACGTGACCAGGCAGCCCGCCCGGGCGTATGTGGCGGCTTTGAGAGGTCCGGCTGTAGATAGATGCTCTAAGTGT
CTCAACTTTATACTAATTTTAGTAAAAATTTATACTAAGTTTAAGACACTTATTTTGGGACGAAGGAAGTACAAGACAGA
GTTCTATTCAATCTTATC--TTTAATAACTGAATGGTGCGGGTGTCTTCCATTTCATGATGAAACGGCATGAACCATGAA
ACTGCATGAAACTTTCATCCAGTTTGACCAAAGTTCTATTTCTAAAATCATTAATTTTAGCTACTTGTAGGTTGCCTGAA
GTTTGAATTTGAGTCATTTAATTTCTTGGTAGTTGATTGTTGTTCCAAGATTCGTGCTTCGT--TTTTTTTCACGACTGT
GATGTTTGTTCCGTTGGGCTTATATTTTCAATTGACCCCATATTTGGGTCAGTCGATTTGCTACTGATCTGAAGCTTAGT
AAATGTGCGATCCAGCCCTCCTATCTATCTGTTTGTTTATTTTCTGTTTTTATC--TGTTTTGCTTTTGTTTTTGTTTTT
TCTTTGTTACTTGATTTTTATTTTTATTTTGTGGGTATTTTTGGAATGTTGGGTGAGTGGAAATGTACTCACATAATTAC
TATGTAATATCTGTGAAAACTACACTATTTTGTTATCATTGCATGCTACAAAAATTGCAAGTTTAAAACGAAGTTGTGTG
CAAGTTTTGTGAAACTTTTTTGTTATCTTTCTTCATTAAACGGCAATACTATTGCTCCTAAGAAGGTAAGTGTCCAAATC
TTAT----------------------------------------------------------------------------
------------------------------------------------------------TCAATCGCTGCCGTACAGCT
AGGCTCACCAGCAGCTAGCGTAGTAGTGCTACAACATCACATACAGCAGCTAGCACAGCCCATC----------TCTTGA
ACAACAAACGGATATCAGAAT
>chr3A_35
----------------------------------CAAAGGGACGCCTGATGGAACTCCATACCCGGAAATAGGAAATTGT
GAGAAAGTGAACCATCTCACTTGACACTCATCCAATGCTTTGTTAACTCAATCTTGCCTTTTAAAACTTTTCCAAAACCA
GATTTGTTTTTTTAGCTAGAGGCCCTCGAATGTCCAAACACAACAAAACTTCTAATAGGTCATTGCACACCTGAGCATCA
TTGATTCCAAAAAAGAATATCAGAATTGTTTTTGAATTTTTTTAGTAATTATTTTCATTTACTGTTGATCAGATGGAGAT
GAGCCTGAGCTCAGACGCCAATTACCGCTATATGTGAGCTAATCTATGACATGCAAGTGTATAGATAGATCTCTGAGATG
GCTGTGGTCCATACCCTGGAGTAAACAGGCCTGTGTGGCACTGTTTCCCAACTTGACCCTCGAGG----------AGGAC
CCGCTTTTCAAACTTTTTAGAATTAGCAAATCTGGATTTGGGTG-TGTCTAGCTCTCATTTAG-AGGAGAAAATTACTCT
GTCTCATCTAAGTTCTAGTACATCGTTGGGTGTTATGCCGAGATTCGTAGGA---------------------------G
TTAATCAAGTAGTGTAGGAGTTAGACGAGAC-TTTGTTAATTCTCATCCAGCAAATCCGGATCTTGTATTAGCCACGAGG
GAAGAAGCGTGGTGTGCACGCAATGCATTTTATTCATCAGTCAATTCCAGACGTACCGTCACTTATCCTGTTCCATTGTC
AGCGTAC----CCATGCTACAATCAATGGAAAACGCGCATATACGGTTTTAGTCAACACTTTATCATTAATCGATAGTCC
TTATCCACACA-TATGTGATAGCGAGCTGCCATGTG--TGCGTATTCAAATTTGCTCGTTGCA-TGGTAGCGATTTCCAC
GCGTTAGGT----GATCCATCGGTGTCACGAGGCTACATATACTACGACTGG-----TT-----GCTAATTC-----CAA
ACGCACAAGCAAGCTCAGTAAGCAACGCCATGGG---GATGAAGCGATGCATCCTTCCCAGCATCCTGCTGATGCTTTCA
CTGGA---G---GCAGCCCTCCTCGTCGCCGGCCGCCCCTCTGTCGACGG------------------CGAGGTGGGTGC
CATTCTCCTGCCGAGCCAAGGCCAAGGTACGGTTG-------------CGCGCGCGTCAACTCCT---TTCT----CTAG
TTCGTGGCTTCA-TCGTGCATCCATGATCCATGAA-----GAAACTGATCTCAGCTTCACCACGTTAACTGAGGGCTCGC
AGTTGCAGACCAGCAAGCA---GCCATGGCGGCGCCGAAGAGGCCGTGGAAGTGCTGCGACCGCGCGCGGTGCACCAGGT
CCATCCCGCCGATCTGCACCTGCGTGGACGAGG----CGTTCGAGTGCGCCTCCACCTGCAAGGCATGCGTGCCGTCGAC
GCGGAACCCGTCCCTCCAGGTCTGCGAGGATCAGTACGTCGGCGACCCCGGGCCCATCTGCCGGCCGTGGGAGTGCTGCG
ACTCGGCCGCGTGCACCAAGACAGACCCGCCGACGTGCCGCTGCGGGGACGAGGTCGAGCGGTGCGCTCCGACCTGCAAG
ACCTGCGAGCCGTCCACGTCGGACCCATCCCTCAACGTCTGCAGGGACGCGTACACCGGGGCCATCCCGCCCACATGCAC
GC---C---AGAGGCGGTTGCCGCCGGCGGTAACTAGCACGC--------------------------------------
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>chr3B_825
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---------------------------------------------------------------------------AGTCC
TTATCCACGCATTATGTGATAGAGAGCTGCCATGTGTGTGCGTATTCTAGTCTGCTCGTTGCATTGGTAGCGATTTCCAC
GCGTTGGGT----CATCCATCGGTGTCACGAGGCTACATATACTACGTCTGGC-----T-----GCTAGCTA-----CAA
ACGCACAAGCAAGCTCAATAAAGCACGCCATGGGGACGAAGAAGAGATGCATCGTTCCTAGCATCCTGCTGATGCTAGCA
CTGCAGTCG---GCAGCCCTCCTCGTCGCCG------------------G------------------CGACGTGGGCGC
CATTCTCCTGCCGAGCAAAGGCCAAGGTACG-----------------CGTGCG--TCAACTCCTTTCTTGTCTAGCTAG
TTCATGGCTTCA-TCATGCG-------TCCATGAA-----GAAACTGAT----------------TAACTGAGGGCTTGC
AGTTGCAGACGAAGCAGCCATGGC---GGCGGCCAAGAAGAGGCCGTGGAAGTGCTGCGACAAGGCCTTCTGCACCAGAT
CCATCCCGCCGATCTGCCGCTGCATGGACGAGC----TCTTCGAGTGCCCCTCCACCTGCAAGTCCTGCGGGCCGTCCAT
GGCTGACCCGTCCCGCCTCGTCTGCCAGGACCAGTACGTCGGCGACCCGGGGCCCATCTGCAGGCCGTGGGAGTGCTGCG
ACCTGCCCCGGGGCACCAGGTCAAACCCGCCGACGTGTCAATGCCTCGACGAGGTCGACAAATGTTCCCCAACCTGCAAG
ACATGCCTGCCGTCCAGGTCGCGCCCTTCCCGCCGCGTCTGCATCGACAGCTACTTTGGACCCTTCCCGCCCGCGTGCAC
GCCCA------AGGCTGTCGCCGCCGGCGGGAACTAGCACGC--------------------------------------
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>chr3A_876
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-------------------------------------------------ATCTGCTCGCATGC-----AGCGATGTCCGC
TCGTTAGGT----GATCCATCGGTGTCCCGAGGCTACATATACGGCTGGCTGC-----TATCTAGCCAGCTTCAAAGCAA
ACGCACAAGCAAGCTCAGTAAGC-ACGCCATGGG---AATGAAGCGATGCGTCGTTCCTAGCATCCTGCTGATGCTTGCA
CTGCA---G---GCAGCCCTCCTCGTCGCCG------------------G------------------CGACGTGGATGC
CATTCTCCTGCCGAGCCAAGGCCAAGGTGCG-----------------CGTGCG--TCAACTCCTTTCTTCT----CTAG
TTCATGGCTTCA-G---GCG-------TCCATGAA------AAACTGAT----------------TAACTGAGGGCTTGG
GCTTGCAGACGAAGCAGCCAT------GGCGGCCAAGAAGAGGCCGTGGAAGTGCTGCGACCAGGCGGTGTGCACCAGGT
CCATCCCGCCGATCTGCCGCTGCATGGACCAGG----TCTTCGAGTGCCCCTCCACCTGCAAGGCCTGCGGGCCGTCCGT
GGGCGACCCGTCCCGCCGCGTCTGCCAAGACCAGTACGTCGGCGACCCCGGGCCCATCTGCAGGCCCTGGGACTGCTGCG
ACCTGCCCCTGTGCACCAGGTCCAACCCGCCGACGTGCCAATGCATGGACGAGGTCGACAAGTGTGCTCCGACCTGCAAG
ACCTGCCTGCCGTCCAGGTCGCGCCCTTCTCTCCGCGTCTGCATCGACCGCTACTTTGGACCCTTCCCGCCCGCGTGCAC
GCCGTC---AGAGGCTGTTGCCGCCGGCGGTAACTAGCACGCTCACG----CG---------------------------
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>chr3D_887
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---------------------------------------------------------GCATGC-----AGCGATGTCCAC
GCGTCAGGT----GATCCATCGGTGTCACGAGGCTACATATACGGCTGGCTGCCA--TA-----GCCAGCTT-----CAC
ACGCACAAGCAAGCTCACTACAC-ACGCCATGGG---GATGAAGCGATGCATCGTTCCTACCATCCTGCTGATGCTTGCA
CTGCA---GTCTGCAGCCCTCCTCGTCGCCG------------------G------------------CGACGTGGGCGC
CATTCTCCTGCCGAGCCAAGGCCAAGGTACG-----------------CGTGCG--TCAACTCCTTTCTTCT----CCGG
TTCCCGGCTTCTTTCATGCG-------TCCATGAAGATCAGAAACTGAT----------------TAACTGAGGGCTTGC
AGTTGCAGACGAAGCAGCCAT------GGCGGCCAAGAAGAGGCCGTGGAAGTGCTGCGACCAGGCGGTGTGCACCCGCT
CCATCCCGCCGATCTGCCGCTGCATGGACCAGG----TTTTCGAGTGCCCCTCCACCTGCAAGGCCTGCGGGCCGTCCGT
GGGCGACCCGTCCCGCCGCGTCTGCCAAGACCAGTACGTCGGCGACCCCGGGCCCATCTGCCGGCCGTGGGAGTGCTGCG
ACTCGCCTACCTGCACTAAGTCCAACCCGCCGACGTGCCGCTGCGGGGACGAGGTCGACAAGTGTGCTCCGACCTGCAAG
ACCTGCCTGCCGTCCAGGCCGCGCCCCTCCCGCCGCGTCTGCCTCGACAGCTACTTCGGGCCCTTCCCGCCCGCATGCAC
GCCCA------AGGCTGTCGCCGCCGGCGGTAACTAGCACGC--------------------------------------
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>chr3B_895
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--------------------------------------------------------------------AGCGATGTCCAC
TCGTTACGTGATCCATCCATCGGTGTCACGAGGCTACATATACTGCTGCCTGC-----T-----GATGGCTT-----CAA
ACGCACAAGCAAGCTCGGTAAGC-ACGCCATGAA---GATGAAGAGATGCATCGTTCCTAGCATCCTGCTGATGTTTTCA
CTGGA---G---GCAGCGCTCCTCGTCGCCG------------------GTCGCACCTCCGCCGCCGACGAAGTGGGCGC
CATTCTCCTGCCGAGCCAAGGCCAAGGTACGTTAACGGCGATGCATGCCGCGCC--TGAACTTCTTTCTTAGTTCAGATT
ATTACTAGCTCCTA-----G-------TGCCTGAA-----GAAACTGATAAACA---------GCTAACTGGGGCCTTGG
GCTTGCAGAGGAAGCAGCCATGGC---GGCGGCCAAGAAGAGGCCGTGGAAGTGCTGTGACCAGGCGGTGTGCACCAGGT
CCATCCCGCCGATCTGCAGCTGCATGGACCAGG----TCTTCGACTGCCCCTCCACCTGCAAGTCCTGCGGGCCGTCCAT
GGCTGACCCGTCCCGCCACGTCTGCCAAGACCGGTACGTCGGCGACCCCGGGCCCATCTGCAGGCCGTGGGAGTGCTGCG
ACTCGCCTACCTGCACCAGGTCCAACCCGCCGACGTGCCGCTGCGGGGACGAGGTCGACAAGTGTGCTCCGACCTGCAAG
ACCTGCCTGCCGTCCAGGTCCCGCCCTTCCCGCCGCGTCTGCATCGACAGCTACTTTGGGCCCTTCCCGCCCGCATGCAC
GCCGTC---AGAGGCTGTTGCCGCCGGCGGTAGCTAGCATGCGCAGCACACGCG--------------------------
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>chr3A_895
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--------------------------------------------------------------------AGCGATGTCCAC
GCGTTAGGT----GATCCATCGGTGTCACAAGGCTACATATACGGCTGGCTGCCA--TA-----GCCAGCTT-----CAC
ACGCACAAGCAAGCTCACTACAC-ACGCCATGGG---GATGAAGCGATGCATCGTTCCTAGCATCCTGCTGATGCTTGCA
TTGCA---G---GCAGCCCTGCTCGTCGCCG------------------G------------------CGACGTGGGCGA
CATTCTCCTGCCGAGCCAAGGCCAAGGTGCG-----------------CCTGCG--TCAACTCCTTTCTTCT----CCGG
TTCCTGGCTTCTTTCATGCG-------TCCATGAAGATCAGAAACTGAT----------------TAACTGAGGGCTTGC
AGTTGCAGACGAAGCAGCCATGGC---G---GCCAAGAAGAGGCCGTGGAAGTGCTGCGACCAGGCGGTGTGCACCCGCT
CCGAACCGCCGATCTGCCGCTGCATGGACCAGG----TTTTCGAGTGCCCCTCCACCTGCAAGTCCTGCGGGCCGTCCAT
GGCCGACCCGTCCCGCCTCGTCTGCCAAGACCAGTACGTCGGCCTCCCCGGGCCCATCTGCAGGCCGTGGGAGTGCTGCG
ACTCGCCTACGTGCACCAAGTCCAACCCGCCGACGTGCCGCTGCGGGGACGAGGTCGACGAGTGTGCTCCGACCTGCAAG
ACCTGCCTGCCGGCCAGGTCGCACCCTTCCCGCCGCGTCTGCATCGACAGCTACTTTGGAGCCTTCCCTCCTGCGTGCAC
GCCGTC---AGAGGCTGTTCCGCCGGT--GTAACTAGCACGC--------------------------------------
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>chr3D_1093
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--------------------------------------------------------------------CGAGGTGGGCGC
CATTCTCCTGCCCAGCGAAGCCAAAGGTACG-----------------CGCGCGCGTCGACTCCTTTCTTCT----CTAG
CTCATGGCTTCA-T---TCG-------TCCATGAA-----GAAACTGAT----------------TAGCCGAGGGCTTGC
AGTTGCAGACGAAGCAGCCATGGCCATGGCGGCGCCCAAGAGGCCGTGGAAGTGCTGCGACCGGGCCTTGTGCACCAGGT
CGCTCCCGCCGATCCGCACCTGCATGCATGGATGAGTTCTTCGAGTGCCCCTCCACCTGCAAGGCCTGCCGGCCGTCGAT
CCATGGCCCGTCCCGCCACGTCTGCCAAGACCAGTACGTCGGCGACCCCGGGCCCATCTGCAGGCCGTGGGAGTGTTGCG
ACCTGCCTAGCTGCACCAGGTCGTACCCGCCGACGTGCCGCTGCATGGACGAGGTTGACAAGTGTGCTCCCACCTGTAAG
AGCTGTTTGCCGTCCAGGTCTCGCCCTTCCCGCCGCGTCTGCATCGACAGCTACTTTGGACCCTTCCCTCCCGCATGCAC
GCCCA------AGGTTGTCGCCGCCGGCGGTAACTAGAACGCCCGCG---------------------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---------S------------------------------------
------------------S-------S-----------------S-----------------------------------
-------S---------------------S-----------S----------S-----------S----S----------
-------S-----S-------S-----S-------S------------------SSS----S----S--------S----
--------------------------------------S-------------S-------------------S-------
---------------------------------S------------------------------SSSSSSSSSSS--SS-
-S------S----S------------------------------------------------------------------
-----------------SSS--------S---------------------------------------S-SS---SSSS-
-------------------------S----SS---------------------------------S------S-------
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-------SSSS-----------------------------S------------------------------------S--
------------S-----------------------------------------------------S-------------
----------------------------------------S---------------------------------------
--S-----------------------------------------------------------------------------
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-----------------------------------S---------------------------S---------------S
------------------------------------------------S--------SS-SSSS----------------
-----------------------S--------------------------------------------------------
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-----------------------------------S--------------------------------------------
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--S-----------------------------------------------------------------------------
------------------------------------------S----SSSS-----------------------S-----
-------------S--S----------------------------S----------------------S-----------
--S-----------------------------------------------------------------------------
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--S-----S---------SS-----------------------S------S-----------------------------
---------------------S------------S-------S--S----S------------------S----------
S----------S---S--S----------SS--------------S--------------S-SS---------S------
-------------------------------S-----S---------S------------------SS-S-----SS---
----------------------S------------------------------SSS--------S----------S----
---S-S------S-----SS--S-----------------------------------------------------S-S-
----S---S---S------S-----------S----S--S--------------S--S---------S------------
--------S-------S--------------------------S------------------------------------
----SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--------------------
---------------------------------------S-S--SS-------SSSSSSSSSS-SSSSSSSSSS---S--
---------S-----S-----
>forward_465
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------TCCCAACTTGACCCTCGAGA---------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------
>reverse_4096
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------TGGTGACCGAGAATTGGCTC---------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------
