>input_sequence_73550
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------------------------------------------------------------------CCCCACTCCGGCAG
AAGGCA----ACAGAGGGTTAGGGTTCCGGCCGCCGGAGCAAAT-----------CACACGGAGGAGCAGAGCCAGCAGT
CGAGAGAGAAGCGAGATGAGCGGGAGCGCGTTCAACGCCTTCAAGTCGCGCGTGCCGGTGGCGTGGAGCCCGAAGCTGTA
CATCACGCTTGTGCGCGGGCTGCCCGGGACGCGCAAGCTCCACCGCCGCACCCTGGAGGCCATGCGCCTCCGCCGCTGCC
ACCGCACCGTCGAGCACCGCACCACGCCCTCCCTCCTTGGCATGCTCACCCAGGTCAAGCGCCTCGTCGTCGTCGAGACC
GAGGAGATGTACAACGCGCGGAAGCAGGCCGACGAGCAGCGCCGCGCGCTCAGGCCCCCGCTCGTCGTCTCGCACGCCCC
GCCGCCCAAGCCGGCCGCCGCCGCGCCGGAGGGCGCCGGGCAGTAGTCGCCTCCGGTTAGTTCCCACCCCCCGGTGATGC
TTCGGTTTGTTTTGCTTTCGCC-----TGCCCGCCTGCCCGCGCGTCAGGTGTTCGACGCAATGCCTTGGCAGGGTTGGC
GTCCTCCTTTATAATAGAAATGCTTTAGCGATCTTTGGCAACTTGAATTGATGGGAATAAGTGAAGAATTTCCTG-----
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>chr2A_1_TraesCS2A01G069200
TCTTGAATTTATTATTTTAATGGGTAATCTTTAATGTGTTTTGACTATAATGGTTTTTGAATTTTGTGTGCGTGAAAGGG
ATT-TTGCAAAAATCCCACACTGATAATAATAATAATAACGATTTGGCCCATTGAGAGTGGGGGTCCCGTGTACACCTAG
GAAAAACCCTCTATTGTTTTGTGCCCTAATGTTTTGTATCATAGAATTGAAACATATCTTTATATGTCATTTTTAACTAT
TATTAATAGTAACCTTTTATATTGGATCTTATTAACCTTGCTAGTTCGATTGTTATGTAGCAACTCCATAACACATTTTA
AGGTCAACACGCCATTTAATACTCCTTTAAGAAAATCCAGTGAGAAAAGTGGTATGCAAAATTACCAAGGACATACTTAA
AT----TGAACTTAGCATACAAGTGTGCCCTCACTACAACTTTCTTTTTAGTAGGCTCGGGATATATTGTAGATATTCAT
GTGTAAAGATACACTATCTCTTTTTAAGCACCGTAAATATCTCATCGAAGACCGGAACTATCGTGTCAAATGCTGCTTTT
GACATGATTTGCTGGGTTGAAATTCGTCAAGGCGCGCTTGCCACCATGAACCGGCCATTAGTATCCGACAATGGTGGAGC
CTAACCCTTTGTCGACATGGAATGAAGCATTAACTTTGAATTTTACAAACCCTAAATGCCGGTTTGGTCCACTTT-TTGC
TCTGTGGGCACCAGAGGAGGCTGATATTTTCGCCAGCAGTATTTTGCAAGAGTATTCAACAGGAAAAATATATATTGGGG
ATTTTGTTTTGGACAAAATGTATTGGGGTTTTAGGCGCCGCTCATTTGCCGAACGTTTCCATTTAGCACATGGGCTATAA
GAAGGTCAATCTGCGGACGGCCCACTTAGCCGAACATTTCCACTTTATTTTGGTCGGCCTTCTTATAGCCCATCTGATAG
TATCAGCCATTT-------------------CTCGATAGATCTCCGAGCTGACCAGCCCAACT-CCCCCCACTCCGGCAG
AAGGCA----ACAGAGGGTTAGGGTTCCGGCCGCCGGAGCAAAT-----------CACACGGAGGAGCAGAGCCAGCAGT
CGAGAGAGAAGCGAGATGAGCGGGAGCGCGTTCAACGCCTTCAAGTCGCGCGTGCCGGTGGCGTGGAGCCCGAAGCTGTA
CATCACGCTTGTGCGCGGGCTGCCCGGGACGCGCAAGCTCCACCGCCGCACCCTGGAGGCCATGCGCCTCCGCCGCTGCC
ACCGCACCGTCGAGCACCGCACCACGCCCTCCCTCCTTGGCATGCTCACCCAGGTCAAGCGCCTCGTCGTCGTCGAGACC
GAGGAGATGTACAACGCGCGGAAGCAGGCCGACGAGCAGCGCCGCGCGCTCAGGCCCCCGCTCGTCGTCTCGCACGCCCC
GCCGCCCAAGCCGGCCGCCGCCGCGCCGGAGGGCGCCGGGCAGTAGTCGCCTCCGGTTAGTTCCCACCCCCCGGTGATGC
TTCGGTTTGTTTTGCTTTCGCC-----TGCCCGCCTGCCCGCGCGTCAGGTGTTCGACGCAATGCCTTGGCAGGGTTGGC
GTCCTCCTTTATAATAGAAATGCTTTAGCGATCTTTGGCAACTTGAATTGATGGGAATAAGTGAAGAATTTCCTGTGATC
GTTCAATTTTACTACTGATTGTTATATTGAAATGTAAGGCCCAAGTCATATCAGTTGATGTTGCGTGATGCTTTGAATGC
TGAATATAGATATGCCTGCAATACACGTTGGAAGGACTCTCTAAATGTGGTTCCCATGACCGATGATACTGCAAGCTGTT
GTAACTGTTGCAGCTATCTTGATTTTGAGGCCCAGTTTGATAAAAGTTTAAGCAGATTTCATTTATGCACTGTTGGTATG
ATGGGCAGGTAGGGCTTTTGGCTATACTTTATGCTATACTATTTAGTTTTGGGAGATGCAGCCATCAAGACATGCTTTGC
TATTTTCTATAAGTTTGTCTAAAATACATTTTGCACTCTATGTGAAAA-TTTTCTTATAAATTTTAAATTGA-TTTTGGC
ACCCTCATTCGAATACAAAATGATGT---------------AGTAATCTGTGATGTCTTGACTTAATGGGAATAAGTGAA
GAATTTCCTGTGAACGTTCAATTTTACGACTACTGATTGTTTTGACATTTTACTGAAATGTAAGGCCAAAGTCTGTTGTA
ACTGTTGCAGCTGTCTTGTTTTTAATGTCCAGTTCAATAAAAGTTTATGCAGACTGGCTGTTAGGTCTTTTGCCTATACT
TCATGGCTTTATGCTATATTTTGATTTGGGAAATCCAGCCATGCTTAACAAATTTCAAGAAGTTCATCTAGAATGTGTTT
TGCACTATATGTGAAAATTCCCTAGTAAATTTTAGGCCTCCTTTGGTTTGGAGGAATTTTAGAGGATAGGATTCTTATAG
GATTTTTTCCTTTAGAGCCCTTTGGTTCATAGGAATGGATTCCTATTCCTACATAGGATTGGTTCCTATCCTCCACATTT
CATAGGAAAATAAAAATGAGCCTAGACTCAATGGAAAAATTCCTTTGGTGTCAACCAAATGACATCTCGTTTCCTATTCC
TACTCATAGGATTTGAGATACATGTCATCTCATTTCCTACAAAATTCCTATT
>chr2B_1
TCTTGAATTTATTATTTTAATGGGTACTTTTTAGTGTAAT-------------TTTTTGAATTTCATGTGTGTGAGCGGG
ATTGTTGCGAAACCCCCACATTGATAATAAAAAAAAA---GATTTGCCCCATTGAGAGCGAGGGTCCCGTGTACACCTAG
CAAAAATCCTCTATGGTTTTGTGCCCTAGTGTTTTGTATCCTAGAATTCAAATATATCTTTATATGGCATTTGTAACTAT
TACTAATAGTAACCTTTTATATTGGATCTTATTAACCTTGCTAGTTCGATTGTTTTGTAGCAACCCCATCACACATTGTA
AGGCCAACACGCCATTTAAAACTGCTCCAAGAAAACCCAGTGAGAAAAGTGGTATGCAAAATTACCAAGGACATACTTAA
ATTGTATGAACTTAGCATACAAGTGTGCCCTCGCTACAACTTTGTTTTTAGTAGGCCATAGATATATCGAAGATATTCAT
GTATAAAGATAAAATATCTCTTTTTAAGCACCATAAATATCTCATTGAAGACTGAAACTATCGTGTCTAATGCTGCTTTT
GACATGATTGGCAGGGTTGAAATTCATTAAGGCACACTTGCCACCATGAACTGG--ATTAGTATCGACAATGACT-GAGC
CTAACCCTTTGTCGACGTGGAATGAAGCATTGACCTTGAATTTTACAAACCCTAAATATCGGCTTGGTCCACTTTCTTGC
TCCTTGGGCACCGGAGGAGGCCGATATTTTCGCCAGCAGTATTTTGCAGGAGTATTCAACAGGAAAAAATAGAT------
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>chr2B_785
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----------------------------------------------------------------------TATATTGGGG
GTTTTGTTTTGGAGAAAATGTATTGGGGTTGTAGGTGCCGCTCATTTGCCGAACATTTCCACTTAGCAGATGGGCTGTTA
GAAGGTCAATCTGCGGCCGGCCCACTTAGCCGAACATTTCCACTTTACTTTAGTCGGCCTTCTTATAGC-----------
------CCATTT-------------------CTCGATAGATCTCCGAGCTGACCAGCCCAACT-CTCCCCACTCCGGCAA
AAGGCA----ACAGAGGTCTAGGGTTCCGGCCGCCGGAGCAGATCGCAC------CACACGGAGGAGCAGAGCCGCCAGA
GGG---------GAGATGAGCGGGAGCGCGTTCAACGCGTTCAAGTCGCGGGTGCCGGTGGCGTGGAGCCCGAAGCTGTA
CATCACGCTGGTGCGCGGGCTCCCCGGGACGCGCAAGCTCCACCGCCGCACCCTGGAGGCCATGCGCCTCCGCCGCTGCC
ACCGCACCGTCGAGCACCGCACCACGCCCTCCCTCCTCGGGATGCTCACCCAGGTCAAGCGCCTCGTCGTCGTCGAGACC
GAGGAGATGTACAACGCGCGGAAGCAGGCCGACGAGCAGCGCCGCGCCCTCAGGCCCCCGCTCGTCGTCTCGCACGCCCC
GCCGCCCAAGCCGGCCGCCGCCGCGCCGGAGGGCGCGGGCCAGTAGTCGCCTCCGGTTAGTTCCCACCCCCG-GTGATGC
TTCGATTTGTTTGCTTTT--------------GCCTGCCCGCGCGTCAGGTGTTCGACGCAATGCCTCGGAAGGGTTGGC
GCCCTCCTTTTTAATAGAAATGCTGTAGTGGTCTGTAGCAACTTGAATTAATGGGAATAAGTGAAGAATTTCCTGGGATC
GTTCAATTTTACTACTGATTGTTTTATTGAAATGTAAGGCCTAATTCAAATCAGTTGATGTTGCGTGATGCTTTGAATGT
TGAATATAGATATGCCTGTAATACACGTTGGAAGGACTCTCTAAATGTGATTCCCACGACCGATGATACTGCAAGCTGTT
GTAACTGTTGCAGCTATCTTGATTTTGAGGCCCAGTTCGATAAAAGTTTAAGCAGATTTCATTTAGGTACTGTTCGTATG
A--------TAGGTCTTTTGGCTATACTTTATGCTATA-T--TTAGATTTGGGAAATGCAGCTATCAAGACATGCTTTAC
TATTTTCAAGAAGTTTGTCTAGAATGCATTTTGCACTATATATGAAAAAATCTCTTATAAATTTTAGATTGA-TTTTAGC
ACCCTCGTTCCAATACAAGAAGTTGTTACTCATTCCGGAGCAGTAATCTGTGATGTCTTGACTTAATAGGAATAAGTGAA
G-ATTTCCTGTGATCGTTCAATTTTACGACTACTGATTGTTTTGACATTTTACTGAAATGTAAGGTCTAAGTCTGTTGTA
ACTGTTGCAGCTGCCCTGTTTTTGATGTCCAGTTCGATAAAAGT---TGCAGACTGGCTGTTATGGCTTTTGCCTATACT
TCATGGCTTTATGCTATATTTTGATTTGGGAAATGCAGCCGTGCCTAACAAATTACAAGAAGTTCATCTAGAATGTGTTT
TGCACTATATGTGAAAATTCCCTTGTAAATTTT-----------------------------------------------
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>chr2D_882
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-------AATCTGCAGACGGGCCATTCAGTCCAAATGTTTCTACTTA-TTTTCTCAGCCTTCTTATAGC-----------
------CCATTTAATAGTGACAGCCATTTCTCTCGCTAGATCTCCGAGCTGACCAGCCCAACTGCCTCCCACTCCGGCAA
AAGGGTACAGACAGAGGCTTAGGGTTCCGGCCGCCGGAGTAAATCCCACCACACGCACACGGAGGAGCAGAGCCAGAGCC
AGA---------GAGATGAGCGGGAGCGCGTTCAACGCCTTCAAGTCGCGGGTGCCGGTGGCGTGGAGCCCGAAGCTGTA
CATCACGCTGGTGCGCGGGCTCCCGGGGACGCGCAAGCTCCACCGCCGCACCCTGGAGGCCATGCGCCTCCGCCGCTGCC
ACCGCACCGTCGAGCACCGCACCACGCCCTCCCTCCTCGGCATGCTCACCCAGGTCAAGCGCCTCGTCGTCGTCGAGACC
GAGGAGATGTACAACGCGCGGAAGCAGGCCGACGAGCAGCGCCGCGCGCTCAGGCCCCCGCTCGTCGTCTCGCACGCCCC
GCCGCCCAAGCCGGCCGCCGCCGCGCCGGAGGGCGCGAGCCAGTAGTCGCCTCCGGTTAGTTCCCACCCCCC-GTGGTGT
TTCGGTTTGTTTTTCCTTTCGCCTGCATGCCCGCCTGCACGCGCGTGAGGTGTTCGACGCAATGCCTCGGCAGGGTTGGC
GCCCTCCTTTTTAATAGAAATGCTGTAGTGATCTGTAGCATCTTGACTTGATGGGAATAAGTGAAGAATTTCCTGTGATT
GTTCAATTTTACTACT------TTTATTGAAATGTAAGGCCTAAGTCAAATCAGTTGGCGTTGCATAATGTTTTGAATGC
TGAACATATATATGCCTGCAATACACGATGGAAGGACTCTCTAAATGTGGTTCCCGTGACTGATGATATGGCAAGCTGTT
GTAACTGTTGCAGCTATCTTGATTTTAAGGTTCAGTTTGGTACAAGCTTAAGCAGATTTCATTTAGCTACTGTTGGTATG
ATGGGCAGGTAGGGCTTTTGACTATACTTTATGCTATA-TATTTAGTTTTGGGGCGTGCAGGCATCAGGATATGCTTTGC
TATTTTCAAGAAGTTTGTCTAGAATGCATTTTGCACTATATGTGAAAA-ATCTCTTATAAATTTTAGAGTGGTTTTTGGC
ACCCTCATTCCAGTACAAA-TGATGT---------------AGTAATCTTTGATTTCTTGACTTAGTAGGAATAAGTGAA
G------------TCGTTCAATTTTACTACTACTGATTGTTTTGACATTTTACTGAAATGTAAGGCCTAAGTCTGTTCTA
ACTGTTGCAGCTGTCTTGTTTTTAATGTCCAGTTTGATAAAAGTTTAAGCAGACTGGCTGTTAGGTCTTTTGCCTATACT
TCATGGCTTTATGCTATATTTTGATTTGGGAAATGCAGCCATGCTTAACAAATTCCAAGAAGTTCATCTAGAATGTGTTT
TGCACTATATTTGAAAATTCCCTTGTAAATTTT-----------------------------------------------
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>SNPs
--------------------------S-S----S---SS-SSSSSSSSSSSSS-----------SS----S----SS---
--------S---SS------S---------S--S--SSSS------S-----------S-S-------------------
S-----S-------S-------------S-----------S-------S---S-------------S-----S-------
--S---------------------------------------------------S---------S----S-------S--
---S---------------S---S--SS-------S--------------------------------------------
--------------------------------S----------S------------SSSS-------S-S----------
--S--------S-S------------------S------------S------S-S------------S------------
---------S--S------------S-S-----S-S---------------S--SS---------SSSS-SSSS-S----
----------------S--------------S--S----------------------SS---S-----------------
--SS--------S--------S--------------------------S-------------------SS----------
S------------S----------------S----S------------------S------S------S-------S-S-
-----------------------------------------------S---S-----------------SSSSSSSSSSS
SSSSSS-------------------------------------------------------------------------S
-----------------S-------------------------------------------------------------S
S--SSSSSSSSS--------------------------------------S-----------------------------
---------S-----------S----------------------------------------------------------
-------------------------------------S------------------------------------------
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------------------------------------S--S--------------------------------S-------
-------------S----SSS----------------------------------------------S------------
-S--------S-------------S---S-----S-S-------------------------------------------
-----------------------S-----------------S------S-------------------------------
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-----------------------------------------------------------------S-S------------
--------------------------------------S---------------S-------------------------
-------S-S-----------S---S-----------S-----------S-S--------------S-------------
----------S--------------------------------------------------------S------------
-S-----------S-----------------------------------------------------S------------
-----------------------------------S--------------------------------------------
----------------------------------S-------------------S-------------------------
-----------------------S---------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_951
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---------------------------------------------------GGTCGGCCTTCTTATAGCCC---------
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>reverse_2434
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---------------------------------AGGCCTCCTTTGGTTTGGAG---------------------------
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