>input_sequence_73527
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---ATGGCGTCGGCGCGCCGCCTGCTGCAAACCTACCCGGGCCAGTTCCAGGCCGCCGAGCCGCCCGACGCCCTCGGCCC
CGACTCCGACGTCGTCGTCATCCTCGCCGCGCTGCTCTGCGCGCTCCTCTGCGTCGTCGGCCTCGCCGCCGTCACCGGCT
GCGCGCGCTCCCGCCGCGACGCCGGCGGCGCCAGATCCGCCGCCTCCTCCTCCGGCCCCGGCGCGAGCAAGGGGCTCAAG
AAGAGGGCGCTCATGGCGCTGCCCAAGCTGGCGTACGAGGACGCCGTGGCGGCGGCCGTCGCGGCGCGCGGGGGCCCGGC
CGCCGCGGC------------GCAGGAGGGGATCCTCTCGGAGTGCGCCATCTGCCTGTCGGAGTTCGCGGAGAAGGAGG
AGATCCGCGTGCTGCCGCAGTGCGGCCACGCGTTCCACGTCGCCTGCGTCGACGCCTGGCTCCGCGCGCACTCCTCCTGC
CCGTCCTGCCGCCGCGTCGTCGTCGTCGTCGTCGCCGACGCGCCGCCCCGCAAGACGCCGCCCGAGCCCAAGCGGTGCCG
CAAGTGCGAAGCCATGGAGGAGGCGTCCTCCTCCTCCGCCTCGGCGACCGCCGGCGACAACGGTGCCGCTCGTTTCATGC
CGTGA---------------------------------------------------------------------------
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>chr5A_1_TraesCS5A01G494500
TGGGTGATGCAAAATGGGCAACCAAAGTCTTATGCGTTCATCACGGCACTAGAAAGAAGAGCAGATAACCCTCAAAAAAA
AAAAAAGAAAGAAGAGCAGATAGACGGCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTC
ATTGCGGACGCTCGTTTCGTTTCTAGACCCTGCGAGAGAGGGGACACGGCTCCATGGATGGGAAATGAGAAGGTGACGTG
ACCGCAAGGCAGCCCCCACCACCCACCTACGCCTGCATCGCGGGCCACTCACCTCCGAGCCACGGATTGCACCGCGCTGC
GTCTAGCCGCCCACCCACCG-CCGCCGCCGCCCGCCGGTACACGCATGTTCGTAATGACCACGGCCAAAAGAATCAAATG
GCAAAGCTAGCCAAGTGACGAGCCCCGGATTCTCATCCCCCGGCTTATATCTCGC-------------------------
--------------------------------------------------------------------------------
------------------------------------TCGCGTCACTGGTGACCGACCGTGGAGCACGCTGCAGACACACA
GCGCAGC-----ACACGGAGTGAGTGAG--TGACCATGGG-----------AGCGCTCTCGGCTGTCGCTCTCGAGCCCG
CATTAATACGCGTGCCATTACTAGTAGGAGTACT---GCTGCGCTGAAACTCCAGCC----CCTTCCCCTCCCCCTCCCT
GCCCGCCGCTGCCATCCCG--------------------ATCCGGCGATCCGGCCAAGAACGG----------------A
CCAATGGCGTCGGCGCGCCGCCTGCTGCAAACCTACCCGGGCCAGTTCCAGGCCGCCGAGCCGCCCGACGCCCTCGGCCC
CGACTCCGACGTCGTCGTCATCCTCGCCGCGCTGCTCTGCGCGCTCCTCTGCGTCGTCGGCCTCGCCGCCGTCACCGGCT
GCGCGCGCTCCCGCCGCGACGCCGGCGGCGCCAGATCCGCCGCCTCCTCCTCCGGCCCCGGCGCGAGCAAGGGGCTCAAG
AAGAGGGCGCTCATGGCGCTGCCCAAGCTGGCGTACGAGGACGCCGTGGCGGCGGCCGTCGCGGCGCGCGGGGGCCCGGC
CGCCGCGGC------------GCAGGAGGGGATCCTCTCGGAGTGCGCCATCTGCCTGTCGGAGTTCGCGGAGAAGGAGG
AGATCCGCGTGCTGCCGCAGTGCGGCCACGCGTTCCACGTCGCCTGCGTCGACGCCTGGCTCCGCGCGCACTCCTCCTGC
CCGTCCTGCCGCCGCGTCGTCGTCGTCGTCGTCGCCGACGCGCCGCCCCGCAAGACGCCGCCCGAGCCCAAGCGGTGCCG
CAAGTGCGAAGCCATGGAGGAGGCGTCCTCCTCCTCCGCCTCGGCGACCGCCGGCGACAACGGTGCCGCTCGTTTCATGC
CGTGACACGCTCTAGCAAGTGAGTCCCGCCCGGTCCGGACATGGCAATGGCATGGATGCATAATGTGTCTGTGCATTGTG
AATCAGTGAATGTGAGTTTGGCATCGATGTCTGTACATTCTCTTTGACGTGACTG-CCTGTTTTCATGGACTCGATCATG
AAGTAGGTTTTCACTCTGAAATCCCTTGAATTTCAGTTG----------------ACATTTCAGCAATTTCAGTACAACA
CAAGACGTTTTTTGC----TCTTTCAAAAAATTTGGTCGAATTCGTTTTGACCGAAATGCAAACCGAAATCACTGAAATT
CACTTCAAATATCTGAAACTAAAAGTGAAAACAATATCGTGGCCTCGATTTGGTCCCAATG------TGGTTTGCATGCG
TGTGCCTAGCATATCTATGAATTTGCTGTATTTCTAGTTTTCTGCCCATATCAACCGTTTTTCCTGGCAAAGTTATCAG-
--AAAAGCTCACAGAAGGATTAGTGATCAGG---CTTATATAGTTTTCTTCCAGCCGGGCAGTGCTGCTAA---------
-TAGTTCAATTGTGTGTGGCTACTTAACCTCTGATGAT------------------------------------------
--------------ATAGTAGTACTTTCTCTGTAAAGAAATATAAGAGCATTTAGATCAGTAAAAGTGTGATTTAGGATT
TCAGGGGACAATGTGATGCCTCTCATACCACACTCGC--------GGTACATGGGGATAATTCCAACTAATTTGGTCAGG
AGATCAAGAATTGTATGTTTCTTATCTCCTAATAGCTTGATGCATGGGTTACATTGCTACGGATTATTTTCTCAAGAGCT
CTTTTTTCATGTTATCAGAATTATTGCCACCATTTAGTGTTCTTTTTAGAGATGAAAAAGGCTTTTTGTTGGTTCATACT
CCCTCTCTGTATCAAAATATAAGACGTCTTAGTGTAAAAAAAAAGCCTTATAT-TTTTTTGACCCTAAGATAGTGTAAAA
ATATGTCGGATATTTTAATATGGAGGGATGGAGTACTTAGGCGTGTTTGGTTGTCTGTACTGATTTTGCCTGC
>chr4D_540
GGGAACAA------------------------------------------------------------------------
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------------------------------------------------------------------GAGAAGGTGACGTG
ACCGCAAGGCAGCCCCCACCACG----TACGCCTGCATCGCGGGCCACTCACCTCCGAGCCACGCACTGCACTGCACCGC
GCCTAGCCGCCTACCTACCCACCGCCGCCGCCCGCCGGTACACGCATGTA---AATGACCACGGCCAAAGGAATCAAATG
ACAAAGCCA---AAGTGATGAACCCCGGATTCTCATTCTCCGGCTTAGAGCATCTCCAACAGGCGCACCAAACTAGCGCC
GCGCCGCAAAATTGCCCGTTTTAGCGCGCGCGCAACCGATATAGTTGCTCCAGCGGGCGCGCAAAAACAGCGCGCGCGGC
ATATGTAGTTGGTTTGGTCAAGTGTCACTTAAAATATCGCGTCACTGGTGACCCTGGT----GCACGCTGCAGACACACG
GCGCGGC-----ACACGGAGTGAGTGAGC--GACCATGGTGCACCAGCGCCAGCGCTCTCGGCTGTCGCTCTCAAGCCCG
CATTAATACGCGTGCCATTACTAGTAGGAGTACTACTGCTGTGCTGAAACTCCAGCC----CCTTCCCCTG------CCT
GCCCGCCACTGCCATCCCGCCCCGCCCCGCCCCGCCCCGATCCGGTGATCCGCCCAAGAACGA----------------A
CCAATGGCGTCGGCGCGCCGCCTGCTGCAGACCTACCCGGGCCAGTTCCAGGCCGCCGAGCCGCCCGACGCCCTCGGCGC
CGACTCCGACGTCGTCGTCATCCTCGCCGCGCTGCTCTGCGCGCTCCTCTGCGTCGTCGGCCTCGCCGCCGTCACCGGCT
GCGCGCGCTCCCGCCGCGGCGCCGGCGCCACCAGATCC---GCCGCCT---------CCGACGCGAGCAAGGGGCTCAAG
AAGAGGGCGCTCATGGCGCTGCCGAAGCTGGCGTACGAGGACGCCGTGGCGGCGGCCGTCGCGGCGCGCGGCGGCCCGGC
CTCCGCGGCGGCCGGGGAGGGGCAGGAGGGGATCCTCTCGGAGTGCGCCATCTGCCTGTCGGAGTTCGCGGGGAAGGAGG
AGATCCGCGTGCTCCCGCAGTGCGGCCACGGCTTCCACGTCGCCTGCGTCGACGCCTGGCTCCGCGCGCACTCCTCCTGC
CCATCCTGCCGCCGCGTCGTCGTCGTCGTCGCCGCCGACGCGGCGCCCCGCAAGACGCCGCCCGAGCCCAAGCGGTGCCG
CAAGTGCGAGGCCATGGAGGAGGCGTCCTCCTCC---ACCTCGGCGACCGCCGGCGACCACGGGGCCGCCCGTTTCTTGC
CGTGACATGCTCTACCAAGTGAGTCCCGCCCGGTCTGGACATGGCAATGGCATGGATGCATAATGTGTCTGTGCAT-GTG
AATCAGTGAATGTGAGTTTCACATCGATGTCTGTACATTCTCTTTGACGTGACTGGCCTGTTTTCATGGACTCGATCGTG
AAGTAGGTTTTCACTCTGAAATCCGTTGAGTTTCAGTTGACACTGAAATATTAAAACATTTCAGCAATTTCAGTACAACA
CAAGACTTCAATGT-TTTTTCTTTTCAAAAATTTGGTTGAATTCGTTTTGGCCGAAATGCAAACCGAAATCATTGAAATT
TACTTAGAATATCTGAAACTAAAAGTGAAAACCATATTGGGGCCTCGATTTGGTCAAGTGTCACAGTTGGTTTGCATGCG
CGTGCCTAGCATATCTATGAATTTGCTGTATTTCTAGTTTTCTGCCCATATCAACCATTTTTCCTGGCAAAGTTATCAG-
--GAAAGCTCACAAAAGGATTAGTGATCGAGCTCCTTATATAGTTTCCTTCCAGCAGGGCAGTGCTGCTACTTGCTTCAG
GTAGTTCAGTTGTGTGTGGCTACTTAACCTCTGAT---------------------------------------------
--------------ATAGTGGTACTACTGTATTC---------------------------AACAGTGTGATTTAGGATT
TTAGGGGATAATCTGATGCCTTTCATACCACACTCAC--------GCTACATGCGGATAATTCCAACTAATTTGGTCACG
AGATCAAGACCTGTATGTTTCTTATCTCCTAATAGCTTGATGTATGGGTTACATTGCTACGGATTATTTTTCTCAGGAGC
TCTTTTTTATGTTATTGGAATTATTGCCACCATTTGGTGTTCTTTTTAGAGATAAAAGAGGCTTTTAGTTGGTTCGTACT
CCCTCTTTGTATCAAAATATAAGATGTCTTTTTACTGTCAAAACGTCTTACATATTTTTTGACACTAAGATATTGT----
-------------------------------------------------------------------------
>chr4B_801
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--------------------------------------------------------------GCACGCTGCAGACACACA
GCGCAGCGCAGCACACGGAGTGAGTGAGAGTGACCATGGTGCACCAGCGCCAGCGCTCCCGGCTGTCGCTCTCAAGCCCG
CGTTAATACGCGTGCCATTACTAGTAGGAGTACT---GCCGTGCTGAAACTCCAGCCTCCCCCTTCCCCTG------CCT
GCCCGCCGCTGCCATTCCACTCCACCA-----CGCCCCGATCCGGTGATCCGGCCAAGAACGAACCGGCCCCGGCGGCAA
CCAATGGCGTCGGCGCGCCGCCTGCTGCAGACCTACCCGGGCCAGTTCCAGGCCGCCGAGCCGCCCGACGCCCTCGGCGC
CGACTCCGACGTCGTCGTCATCCTCGCCGCGCTGCTCTGCGCGCTCCTCTGCGTCGTCGGCCTCGCCGCCGTCACCGGCT
GCGCGCGCTCCCGCCGCGGCGCTGGGGGCACCAGATCC---GCCGCCTCCTCCGGCCCCGACGCGAACAAGGGGCTCAAG
AAGAGGGCGCTCATGGCGCTGCCGAAGCTGGCGTACGAGGACGCCGTGGCGGCGGCCGTCGCGGCGCGCGGCGGCACGGC
CTCGGCGGCGGCCGGGGAGGGGCAGGAGGGGATCCTCTCGGAGTGCGCCATCTGCCTGTCGGAGTACGCGGGGAAGGAGG
AGATCCGCGTCCTGCCGCAGTGCGGCCACGGCTTCCACGTCGCCTGCGTCGACGCCTGGCTCCGCGCGCACTCCTCCTGC
CCTTCCTGCCGCCG---CGTCGTCGTCGTCGTCGCCGACGCGGCGCCCCGCAAGATGCCGCCCGAGCCCAAGCGGTGCCG
CAAGTGCGAGTCCATGGAGGAGGCGTCCTCCTCC---GCCTCCGCGACCGCCGGCGACCACAGGGCCGCCCGTTTCTTGC
CATGACGTGCTCTAGCAAGTGA----------GTCTGGACATGGCAATGGCATGGATGCATAATGTGTCTGCGGAT-GTG
AATCAGTGAATGTGAGTTTCACATCGATGTCTGTACATTCTCTTTGACGTGACTGGCCTGTTTTCATGGACTCGATCGCG
AAGTAGGCTTTCACTCTGAAATCCGTTGAATTTCAGTTGACATTGAAATATTTAAACATTTCAGCAATTTCAGTACAACA
CAAGACTTAAAAATGTTTTTCTTTTAAAAAAATTGGTTGAATTCGCTTTGGCCGAAATGCAAACCGAAATCATTGAAATT
TACTTGAAATATCTGAAACTAAAAGTGAAAACCATATTGGGGCCTCGATTTGGTCAAGTATTACAGTTGGTTTGCATGCC
TGTGCCTAGCATATCTATGAATTTGCTGTATTTCTAGTT------------CAACCATTTTTCCTGTCAAAGTTATCATC
AAGAAAGTTCAGAAAAGAACTGGCGATCGCG-------TATAGTTTTCTTCCAGCAGGGCACTGCCGCTTGCTTCAAGTA
--AGTTCAGTTGAGTGTGGCTACTTAACCTCTGATCGGGTTCATCGTTTTCCTATTACTGCATGTCCATTAGACCCAGAG
AACTACTGCTACTGATAGTAGTACCACTGTATTC---------------------------AACAGTGTGATTTAGGATT
TCAGGGAATAATCTGATGCCTTTCATACCCCACTCATGCAGTCATGCTACATGCGGATAGTTCCGACCAATTTGGTCACG
AGATCAAGACTTGTATGTCGTTTATCTCCTAATAGCTTGATGCATGTGTTACATTGCTACGGATTATTTTCTTAAGAGCT
CGTTTTTATCA---------------------------------------------------------------------
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>SNPs
S--SSS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--------------
----------------------SSSSS-------------------------------------S-S-----S--S-S--
-S---------S---S---S-----------------------------SSSS----------------S----------
S------S-SSS------S--S--------------S-S--------S-S-SSSS-------------------------
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-----------------------------------------------------SSSSSSSSS------------------
---------------------------------------S---------------------------------S------
-----------------------------------------S----------------------------SSSSSSS---
---------------------------------------------S----------------S-----------------
-----------------------------S------------------------------------------------S-
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------------------S----------S--------SSS---S---------------S-------------------
-----------------------S-----------------------------------------------S--------
-S---------------------------------------------------------------------S--------
------------------------------SS------------------------------------------------
--S---------------------------------------S-------------------------------------
---------S------------------------SSS---------------------S----S-----S------S---
-------S---------------------------S----------------------------------------S---
-------------------SS--------------------------------------------------------S--
------------------------S-------------------------------------------------------
------S-SSS-SSS---------S------------S------------S---------------------S-------
S----S--------------------------S----S-S---------------SSSSSS-------------------
--------------------------------------------------------S-----------------------
--S----------S--------------SS-------------------------S--------------S---------
--------S--------------------------SSS------------------------------------------
-------------------------SSSSSSS-SSSSSSSSSSSSSSSSSSSSSSSSSSSS--S----------------
--------S---S--------S-------------S----------S------S------------------------S-
---------S--------------------------------------------------------------S-------
-S-----S-------SS------------------S-----------------S---S--------S--------S----
------S-----------------S-----SS-SSSSSS----S-S----S------------S--------S---SSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_110
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----------GAAGAGCAGATAGACGGCCC--------------------------------------------------
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>reverse_1848
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-------CGCTCTAGCAAGTGAGTCCC-----------------------------------------------------
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