>input_sequence_73514
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---------------------------------------------------GTATATAACAAGGCCAAACGCCAACGACC
AATTCATATGTCACTACGTAGTG-ATTAGTGATCTAGCTAGTTAAACAATCTCCATCGAGAAAAAGTCTAGCCAACAATG
GCGCTCCGGCTCCGGCCGTCCTACCTCTGCCTGTGCACCTCCTTTCTCTTGGTGGTCGCCTTAGCCGGCACACGGCCGGC
GGCCGCCCAATGTGAGAAGACGGTGGGGGCGGTGCCGGACTGGTGCACAAAGCAGTTCTTCAAGGCGGCCTCCTCGGGTG
CCAAGGGGGACGAATTCATCACCCATGAATGTTGCCTGCTGCTCGGTTGTGTCCATGAGTCAAACTGCGATAGCATCCTC
CGCCGCTTCTGCCCGGCTCCGGACGCCGATGAGTGCCCGGTGCCACCCGTCGCACCAGCTGTGTCGACGGGAGCGGCTAA
CTAGCTAGACGTTCGTGCTTTACAGTGTCCTAGATGAATAACCGACATGTGTACTTGTTCGGCGTGCATGGTTGCAATGG
AT--TTTTTTCCGGTGTGATCCATTTGATTCACATTTCTGCATCGCTGTGTTGCTGCCAT---------CTGCTTTTGCT
GGAGTAGTCAATGAAGCTGCCATCAGTTCTCTTGTTTATTTTCATTGGAACCA---------------------------
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>chr3A_1_TraesCS3A01G496600
CGTGGTCAATATTCCAAGAAGGATTCCTTCAGACCTTCCACGAGCTGGTAGACTATGCCATGTGTAGTCGAAACCACCTG
ATAGGTGATCGAGGACGTGTGGGCGAAAGTCGCATTTACCAGCCTCAGAAATTGCCACAAAATCCAATTCGTGTTCTCCC
ACACAATCACCGATGTGTTTATGTTTAGCCAAGTCTGAGAGACCTCTGCTATTCCAAAACATGCCTCTCATGAGAAAACT
CGAATGGGTGTGGAACTTTTCTGTTCACTGAGTATTAGTGTACGAGCCTAACATGTGAAGTAAAAAGGAAACGGAGGGTG
TATTAGAG----------AGGCCGACTTCATAGAGATCAAACCCTTTGAGTCGAAGTGTCAGGTGATGAATGTTTTATGT
GCTCACCTGATCCAACTCACCAAATCATGCCGCTTTAACAATGTCAATGTCCTATAAGATACTAAGCCATTTGTAGTTCA
TGCCCGCCTTATGGGTGGTAGCATGAATATCCTCTCATGGGAAATATTTCGCTTGCAACAAATGTGCACAGGGGACTCCC
GAGCTGGTGGGGGCCACCATGCAGGCTTGTCTTGCTAGCATGGAGAGATTGAAAGAGTGCAGGTCACTGAACCGAAGCCC
ACCATCCTTCTGTGGCAGCTTCATCTTCTCCAAACCAACCTA-GTGCATCATGTGATCATCATCTTTCTATATATGGCCA
CCATTTTTAGGTCATCCTTAATTATCACATTTTTGTCAACAATACTGCGGATAACTAGTAGTAATTAATTAGTGCATGTA
AACACAATCATGGCATTTCATGAAAAACTGCAATCAAGGAATAAATTAAGAATATCATAATTCATGGCACAAATTAAGAA
TTTCATAACACACACCATAAATTAAGAATACCATAACTCACGGTATAAACTTAGAATATCATAACTCGAGTACCAAAGTA
AATTCTAAGCAGTTAATCAATGCCGCAATCAAATCACATTACCATCGTATAGTATATAACAAGGCCAAACGCCAACGACC
AATTCATATGTCACTACGTAGTG-ATTAGTGATCTAGCTAGTTAAACAATCTCCATCGAGAAAAAGTCTAGCCAACAATG
GCGCTCCGGCTCCGGCCGTCCTACCTCTGCCTGTGCACCTCCTTTCTCTTGGTGGTCGCCTTAGCCGGCACACGGCCGGC
GGCCGCCCAATGTGAGAAGACGGTGGGGGCGGTGCCGGACTGGTGCACAAAGCAGTTCTTCAAGGCGGCCTCCTCGGGTG
CCAAGGGGGACGAATTCATCACCCATGAATGTTGCCTGCTGCTCGGTTGTGTCCATGAGTCAAACTGCGATAGCATCCTC
CGCCGCTTCTGCCCGGCTCCGGACGCCGATGAGTGCCCGGTGCCACCCGTCGCACCAGCTGTGTCGACGGGAGCGGCTAA
CTAGCTAGACGTTCGTGCTTTACAGTGTCCTAGATGAATAACCGACATGTGTACTTGTTCGGCGTGCATGGTTGCAATGG
AT--TTTTTTCCGGTGTGATCCATTTGATTCACATTTCTGCATCGCTGTGTTGCTGCCAT---------CTGCTTTTGCT
GGAGTAGTCAATGAAGCTGCCATCAGTTCTCTTGTTTATTTTCATTGGAACCATTA-----AATAGTCACAATGATAATT
TCCATGTTCTGTCAGCCTACATAGCCGCGTTGCACT-------------CAAAATCCCTGGAATGAAATGACATGTGGAC
TATAATGTGGCTCATGTTAGTTTCAGAAGATCGTTCGTCACTAACTGTGATAAAAGACGTTCTGCAACTTA---------
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---------------------------AAAGACAACTCAAGTACTAAGACCGTGCGTGCGCTTTGTCACGGAAGCTAGCT
TGCAGAATGTACAATAGTATTAGTGATTTCTATGGCGCTTGGTCACCCGCTAGAGCTGCGCTGTAAGCCCTCAACTGGTC
CTTTGTCTCCACGTAGGCAAACGTTCGGTAGATACGATGCTCGAGACGAGTCAACTCCTCTCCGTCCTTCTGCCCGATCT
GCTCCATGCTCGT-------------------------------------------------------------------
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----------------------------------------------------------TTGCGTCTTGTGCTGGTGCAAG
TAACAATTTTCATTTCGGCGTCCGTGTCTCAGGAC---------------------------------------------
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-----------------GCAGTTGCCATGTGCGAAGTGCGGCATCGCGAGCTGCCGCGGCCTGTGCGCCTCCATGACAAA
CCGGAGACTCCACCTCTCGTCCACCTCCAGGACCCAAACTGTCATCGAGCCACTGTCG-CGCCCAGCGCAACGCCCATCA
CCCCATCCACCTTCGCCAGGCGTCTGTGGGACGACTTAGCCGGCACGGGTAGAGGCTCGGTGTGAAATGATGCTCTCATG
TTCGAGGTCGAACAACTAAAGCGTGGCATCGATGATGGCGAGGCTGGAGAGGCCGGGGCTGCACTTTGCACCCGCAGGGC
CGGTCCTGAGAATTTGGGGGCCCGGGGCGAAACTAAAATGCAGGCCCCTCAATGCTAATAGAGGTACATACTTTGCACGT
ATAGAATTATATACGATCACATCACCACATTAATTCATAAGTAAATTTCTAAACGAAGTATAATTTTTCTTTTTTTCTTT
TGAAAGGATGGATTCTAGTAGAATGCACGAAAATATTTAACACCATGGCTTTCTTAATTTCATAATAATCCAAAGAAATT
GAATTTGTAATGATG
>chr3B_262
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---------------------TGTTCACCGACTATTAGTGTACGAACCTAACATGTGAAGTAAAAAGGAAATGGAGGGAG
TATTGGTGTGCACCTACTAGGCCGACTTCATAGAGATTAAACCCTTTGAGTCGAAGAGTCATGTGACGAACG-TTTATGT
GCTCACCTGATCCAACTCACCAAATCATGCCGCTTTAACAATGTCAATGTCCTTTAAGATACTAAGCCATTTGTGGTTCA
TGTCCGCCTTATGGGTGGCAGCAAGAATATCCTCTCACGGGAAATATTTCGCTTGCAACAGATGTGCAAAGGGGACTCCG
GAGCTTGTGGGGGCCACC-TGCAGGCTTGTCTTGCCAACATGGCGAGATTGAACGAGTGCAGGTCACTGAACCGAAGCCC
ACCATCCTACTTTGGCAGCTTCATCTCCTTCAAGCCAACCCAGGTGAATCATGTGATCATCATCCTTCTATATATGACCA
CCATTTTTAGGTCATCCTTAATTATCACATTTTGGTCAACATACCGT-GGATAACTAGTAGTAATTAATTAGTGCATGTA
AATATAATCATGGCATTTCATGAAAAACTGCAATCAAGGCATAAATTAAGAATATCATAATTCATGGCACAAATTAAGAA
TATCATAATACACACCATAAATTAAGAATACCATAACTCACGGCATAAAGTTAGAATATCATTACTCGAGTATCAAAGTA
AATTCTAAGTAGTTAATCAATGCGTCAATCAAATCACATTAC----------TATATAACAAAGCCAAACGCCAACGACC
AATTCATATGTCACTACGTCGTTAATTAATGATCTAGCTAGTTAAACAATCTCCATCGAGAAAAAGTCTAGCCAACAATG
GCCATCGGGCTCCGGCCGTCCTACCTCTGCCTATGCACCTCCTTCCTCCTGGTGGTCGCCTTAGCCGGCACACGGCCGGC
GGCTGCCCAATGTGAGAAGACGGTGGCGGCGGTGCCGGACTGGTGCACAAAGCAGTTCTTCAACGCGGCCTCCTCGGGCG
CCAAGGGGGACGAATTCATCACCCATGAATGTTGCCTGCTGCTCGGTTGTGTCCATGAGTCAAACTGCGACAGCATCCTC
CGCGGCTTCTGCCCGGCTCCGGACGCCGATGAGTGCCCGGTGCCACCCGTCGCACCAGCTGTGTCGACAGGAGCGGCTAG
CTAGCTAGACGTACATATTTTACAGTGTCCTAGATGAATAACCGGCCCGTGTACTTGTTCGGCGTGCATGGTTGCAATGG
ATATTTTTTTCCGGTGTGATCCATTTGATTCACAT--CTGCATCGTTGTGTTGATGCCATCTGTCTTCGCTGCTTTCCCT
GGAGTAGTCAAAGAAGCTGCCATCAGTTGTCTTGCTTATTTTCATTGGAAACCTTACTAAAAACAGTCACAATGACAATT
TCCATGTTCTGTCAGCCTACATAGCCACGTTGCACTCAAAAGGCAAGTGCAAAATCCCTGGAACGAAATGACACGTGGAC
TGTAATGTGGCTCTTGTTAGTTTTAGAAGATCGTTCGTCATTAACAGAGGAGAAAATCGATCAGATCTGAGTAGGTAGAA
TCCAGGAGGACGAGTATTTAAAAACATATCATTCTTGGGGTTTGTGTCCCTCTCAACCAACACTTTCTTAACAGTGGCAA
AAGACTACCCCATTTATTTATTTATTTATTTTTGCAAAAAATTAACAGATGCGTTTGATGACCGGTTAAGATGATTTAAG
CGTGTTTATGATAGGCGAGTCAGACCCGTCAAGGCTAACGTGGCAGAAAAGTCAACTCCGCTTATTTTGACCATTAAGTT
GACAGTTACAACTGATGGGCCACACACATCAGCACCAACCATCTTCTTCCTCCTTCCCTCCCTATCTATTTGACAAATAC
CTCATCTGCATCTAAGGGGAGCAGGGGAGCTTCGGCGACGCGCCGGTTACTAAAGATGCCCACGCCGCTCCTGATCGACC
AAGATGGTTCACGAGACCTCTCGCACTTACCGCTCTAGCGCACAAACAGCATGGAGCAGGGGTGAAGCCAAGATAAAAGG
CCACCAGGGTCAACGCGAACATGTAGCACAAATTAATGTATGCCTCAAAAACAAAGAAGCAATAATAAAGGGCTGAAAAT
TGTGTGCCTCGTATTAAGTAAGATGTCTATAACTAAATCTCCTTCTCATCCCGTGTCTCAGGCACGTCACAGATATCTCT
GAACCTGCAAATCTTTGTTGCCGAGAATGGTTTTGACTTGATTAATAAAACAGCTAAAATTAGGTAACTGTGACATAGAC
GGTGTTCCCCAAGTTTTGATACAACTCAAAGACAACTCAAATACTAAAACGTGCGTATTACTACGTATTACTAAACAGTA
AAACTAAGCTAGCTACGCCCACTCACAGCGATTCAACATTGTCAACCGTCGGATCCATGAACAAACGCACCAGATCCACA
AGTCGTCCACAGCACCACTTGCGCCTCACTCGCGCATAACCCGCCGTGCGAAACAACCGACTACCGTAATCAGGGCCGCT
GCTCCGCAAACCGTATTGGGAGCTCTCTCGTGCACTGGGCCGTGACACCTGACCAGCAGATTGGATGGCCCAATAGAAAC
ATCGCTCCAGAGTCGTAAAATTGCGACCTCAGACCATTGGCGGCAGATTCATGGCGATGGCACTCGGCTGCCCCCTTCTG
TAATTCTTGCTGGTTGTGGAGGTCCCATACTCCTCGTTTGCCTCGATCTCTCCACGCCGGATTGCAGGCTGTGGTGACTA
TGGGTGGTCCATTTTCACAACATCCAACCCTAGGCCCGGCGGACGGGCCGCCGTTATGTTCGGGCTGCTGCTGGTGCTGG
TAAGTACATGTGCAACGCTCTCACCACCACCCACCTTGAACAGAACACGAGTGCAACAATATGCCCGGGCTCCTGTACCT
TGTTCGTGGCTGCTGTTTGCTAGATGTCTCTTAATATGTGATCCATCCTGAACTCTAGCACGTAGGAAGTGGCAAGAAAT
TTGCTGCCAAATTCGTGGTTCAAATTCTTTCATTTAGAATCCTTGAAACTCATCTTTTTTTATAATAAACACTTGCAACC
CATCTAATCCTATTATTTGTATCATATTGATATTGCAAAAAAAGCTATTTCAAATAGTGATTTATTCATGGGTCTTTCCC
ATGTAATTGGCCCATGGTCGCCCAAGGTTCAGGCTCATCAGTATTAGAAATTCCACATCATTAAGGCATGATTTAATATA
TTCTTTAAATTCTCAGTCTGATACATTTTCATCTAGCCTTCGAGGGTGTCCACGTATGTCATAGAGTAAGGATCGTGTTT
CTTACATGTACTCTAGACTAATATCATCTATCTAAGTACCATTTATGCTTGCCCATGTTAACTTGAAGCTTAAGATATTA
TGCCCTTAATAATGATACAAGAACTAAATATAAGCTGTTTAGGAATGGTTACAGGCTTTATGGGTTTATACCAACTAATC
TCGAGTAGTTCATTGGTGCAGTCGCCATGCGCGAAGTGCGGCATCGCAAGCTGCCACGGTCCGTGCGCCTCTATGACGAA
CCGGAGACTCCACCTCTCGTCCACCTACAGGGCCAAAACCGTCATCGAGCCACCGTCGTCGCCCACCGCGATGCCCATCA
TCCTGTGCACCTTCCCCAGGCGAGTGTGGGATGACTTAGTCGG-------------------------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSS-------S--S-------------S-------------------------S------S-
----S-S------------------------------S------------------S----S----S---S-S-------
-----------------------------------------------------S--------------------S-----
--S---------------S----S-------------S----------------------S-------S----------S
-----S------------S----------------S-S-----S---------S--------------------------
--------S--S--------------S--S---S------S-----S-----------------S-----------S---
---------------------------------S-------SSS-SSS--------------------------------
--S-S----------------------------------S----------------------------------------
-S------S----------------------------------S-----S------------S---------S-------
---------S-------------SS-----------------SSSSSSSSSS----------S-----------------
-------------------S--S-----S---------------------------------------------------
--SS--S-------------------------S-----------S---S-------------------------------
---S----------------------S------------------------------------S--------------S-
----------------------------------------------------------------------S---------
---S----------------------------------------------------------------S----------S
------------S-S-SS--------------------------S-SS--------------------------------
-----------------------------------SS--------S-------S----------------------SS--
-----------S----------------S-----S---------------S-S----------S-----------S----
--------------------------S------------------------------------S---------S------
-S-----------S---------S----------------S----S-S-SSS---SS--S--S-SSSSSSS---------
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----------------------------------------S------S--SSSSSSSSSS--SS--SSSSSS-SSS--SS
SSSSS--SS--SSSSS-SSSSSSSSSSSSSSS-SSSSS---SSS---SS-SSSSS-SSSSSSSS-S--S-SSS-SSSSSS
SS-S---SS--SSSSSS-SSS--SSSSSSSSSSS-SSSS-S--SSSS-S-SS-SSS--SSSSSSSSSSSSSSSSSSSS--
-----SSSSS-SS-------------------------------------------------------------------
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------------------------------------------------------------SS-S--SS---------SS-
---SS-SS-SSSSSS--SSS--SSSSS-S-SSSS----------------------------------------------
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----------------------S------S-----------------S-------S---S-S---------S-----S--
--------------------------S----S--S----S-------------S-----------S---S-S--------
S--SS-S-------S-------SS-------S-------S---SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSS
>forward_504
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----CGCCTTATGGGTGGTAGCAT--------------------------------------------------------
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>reverse_2700
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-----------------------------------------------------------GCTGTAAGCCCTCAACTGGT-
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