>input_sequence_73496
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-------------------------------------------------------------ATGGCGAATCCGGAGGCCA
GCAAGCCGCCGGGACCCGACGAGCCGGCGACGGAGCGGCGAGCTGACGAGACGGTGCACAAGGACGGCGCCGGCAACCCA
CCTCCCCCGCCGGTAAACCGCTCAGAGCACAAGCATCCA-------AT-TATATCTGTCTGAATACTGTAGAATTCTCT-
-GAGCGATTATTGGTCTGCAGTTCTTGGAGGTGACCTGCAGGAGCTCCGGCGAGGTGCGGCGGTTCGCGGCGGGGACGAC
CGCCGGGTACGCGCTGCACGCGGTGAACCGCAAGCTGGCCCCCGGCGCCCCGGCGGCGCTGCACGTGGAGGCGGCCAAGG
AGGGGGAGGAGCCCGTGTGCTTCGGCCCCACCGCGCCCCTCGCCGACTACGGCCGCGGCTGGCGGCTCCAGACCGTCACC
GAGCAGGACGCGCCGGGCGCGCATCAT---------CACGCGCCACCGCCCGGAGACGAGGGGAAGGGGGCTCGCGAGAG
GGAACTGCTGAGGAAGAAGGGCGCCTCCGTGTACCTGGCCAAGATCGGGCTCGCCTTCGTCTTCCTCTTCCTGCTCGGCG
GGCTCTTCACCTACCTGCTCGAGACCGTCCCCGACATGATCCTCGCCTCCACTCCTCCTCAGTCCATGTAG---------
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>chr5A_1_TraesCS5A01G387300
TGGTGCGCCAGCTGCGTGATCGCCGTCCACCTGCA----GACAG----AGGAGACACGAACGGACGAACACGGTTACGGC
TGGCCGGAGGCGAAACCACGCGATCTGGCGGCGGTGGCCTGAA---------AGAAAGGCTTACGCGGTGGTCTCCTGGC
CTCCGCACTGGGTGCCGGTGCTGACGAAGAAGCCGGCGGGCTTGCCGGCGAGGCGCTGGCCGCGGCAGAGCGGCGCGGTG
GAGTCGAAGAAGGCCTGCATCTGCGCGGCCATGGCGCCGTACCGCGCGGGGAAGCCGAAGAGGAACCCGTCGGCGTCGGG
GAGCCCGCCGGGGTCCGCCACGGGGATCCCCTCCGCGTCCATCTCCGCGGCGGCCTCCAGCGCGCCCATCCTGGCCAGCA
CGGCGCGCGGCAGGGTCTCCGGCACGCGCAGCAGGATCCCCAGCGCGCCCGGGACGGACCCCACCCCGCGCTGCACCGCC
CGCGCCAGGCGCCGCACCTGCCCGTACATGGAGTAGAAGACGACGTAGATACGGACCTGGCGTG----------------
-----------------------------GCGCCGGCGCGGCGGTGGCCGGGGTCGGCTCTGGCGCGGTGGTGGCCGGGG
TCGGCTCCGATGCGGTGGTGGCAGGGGCCGGGATGAATGTGCGGTCGCGGCGGTGCGGGGGGAGCGGGAGGCGCTGGCCC
TTGCTGAACACGCAGCCGCCGCCCTTGCCCATCGCTGCCGGC----------GGGGAGGGGAGCGACGCCGGTCACTGGC
-TCACTCTGACACGACACGTAGGAGCAGCGCGCGCGATCGGGACAAACGAACGCCGCTGCGGCCGCCGGCCCGTGCGGGT
----CGTAACCGCAC-GCGAGCTGGGCCTGTACGGCCCTT---GCAGCAGGTGGGATCCAAATGCAAGCCCAGTGGATCC
TGTCAGGCCCGGTTTTAGTCTGGGCCTTGCTCGGCCCGATCCGAACGTATAAACAACCTACCCACGTGAATTTACAAGTC
AACCACTACCTGCT--------------------TTCCTCTGCTCCTGCACACCCGCGGCCATGGCGAATCCGGAGGCCA
GCAAGCCGCCGGGACCCGACGAGCCGGCGACGGAGCGGCGAGCTGACGAGACGGTGCACAAGGACGGCGCCGGCAACCCA
CCTCCCCCGCCGGTAAACCGCTCAGAGCACAAGCATCCA-------AT-TATATCTGTCTGAATACTGTAGAATTCTCT-
-GAGCGATTATTGGTCTGCAGTTCTTGGAGGTGACCTGCAGGAGCTCCGGCGAGGTGCGGCGGTTCGCGGCGGGGACGAC
CGCCGGGTACGCGCTGCACGCGGTGAACCGCAAGCTGGCCCCCGGCGCCCCGGCGGCGCTGCACGTGGAGGCGGCCAAGG
AGGGGGAGGAGCCCGTGTGCTTCGGCCCCACCGCGCCCCTCGCCGACTACGGCCGCGGCTGGCGGCTCCAGACCGTCACC
GAGCAGGACGCGCCGGGCGCGCATCAT---------CACGCGCCACCGCCCGGAGACGAGGGGAAGGGGGCTCGCGAGAG
GGAACTGCTGAGGAAGAAGGGCGCCTCCGTGTACCTGGCCAAGATCGGGCTCGCCTTCGTCTTCCTCTTCCTGCTCGGCG
GGCTCTTCACCTACCTGCTCGAGACCGTCCCCGACATGATCCTCGCCTCCACTCCTCCTCAGTCCATGTAGCAGGATCTT
CGATCAAAAAATTTGTCATCTTTGGAAGGGAATTCGTGTTC---------------------------------------
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---------------CTTCAGAAGTTAATGATTCTTAATCCGCTTTGCGAAGTCCGTTTTGGCGTCTTCACCCTATCAGA
TAAATGTCAACAGCAACTC-TACCCAAGCACAAGAATGAACCAATGATAAGCTTTCCAAGTAATGG--------------
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--------------------------------------------------------------ACAAACTTTCAGAAGTTC
AATGGTAGAACACACAAGAAATTGTGCCTGACAGGGAAATAGACATCACAGTACAGAACGGCATGAAAATCATCAGCTGA
GCATATCGAAAGCTATTTTCTTCCGCGAAAAAAGATCAACACCTATTTTGTTCATCGTTACATGTTACAATTCAACTGTT
AGTGTTTATTTCCGTGTGAGGCAGTATGCTATAGTACACACCACCGCCAAAAAAAGCAGGTGAAAACCTATGGCCTAGCA
GAACTCATTTGCCCTCAAGAAAAACAATGCCTGCATCTTCAGTGTTGCTGATATCCAGGCAGCTGAAAATGTGGTGTGTT
AACCGCATCAGATAAATGTCCAGGCCTGGTGTATGATGACGAGCAAATGATTGGTATTCTAGTTGAACGCAGAGTTGGCT
GTTCTTCAGAAATGAACGATTCCACAATAATAGTTGGAAAACGCTGAAAATTCAGTGTCAGTACACATAGAGAATGAAGC
GCACGAGGGCCTCCTTCGATTTGTAGGATTTCTAAAACTGAGTAGGCTAAACACATTTCTTTTTTGGCAAACAAATCAGT
GATAACTTTTTTGTTTTATATTGTGATAATGACTTCCACATACTAG----AAAGCTCCCATCAGTTAACAATAACCGTAA
AGAGAGCCTGTTAAACAAAGCAAAGCTCGCAAAGGAAGACAATTTTTTACTCTTATTTCTAGCAGATACGGACTTGA---
----------------------------------------------------------ACGAGATACAGGCTTGAACTTC
ACCGTGCTCTGTGCGGATTGCCCAAACACGTTGGGCCATGTCAAGAGGGAACTCGACATCGCCTTCG
>chr5D_1
TGGTGCGCCAGCTGCGTGATCGCCGTCCACCTGCA----GACAGACAGAGGAGACACGAATCCACGAACAGGGTTACGGC
TTGCCGGAGGCGAAACCACGCGATCTCGCGGCGGCGATGGGCGGCCTGAAAGAGTAAGGCTTACGCGGTGGTCTCCTGGC
CGCCGCACTGGGTGCCGGTGCTGACGAAGAAGCCGGCGGGCTTGCCGGCGAGGCGCTGGCCGCGGCAGAGCGGCGCGGTG
GAGTCGAAGAAGGCCTGCATCTGCGCGGCCATGGCGCCGTACCGCGCGGGGAAGCCGAAGAGGAAGCCGTCGGCGTCGGG
GAGCCCGCCGGGGTCCGCCACGGGGATCCCCTCCGCGTCCATCTCCGCGGCGGCCTCCAGCGCGCCCATCCGGGCCAGCA
CGGCGCGCGGCAGGGTCTCCGGCACGCGGAGCAGGATCCCCCGCGCGCCCGGCACGGACCCCACCCCGCGCTGCACCGCC
CGCGCCAGGCGCCGCACGTTGCCATACATGGAGTAGAACACGACGTAGATGCGGACCTGGCGTGGCGACGGCGCTGGCGC
CGGCTCCGGCGCGGCGGTGGTCGCGGTCGGCTCCGGCGCGGCGGTGGTCGGGGTCGGCTCTGGTGCGGCAGT--------
-------------------GGCCGGGGCCGGGATGAAGGTGCGGTCGCGGCGCTGCGGGGG---TGGAGGGCGCTGGCTC
TTGCTGGGCACGCAGCCGCCGCCCTTGCCCATCGCTGCCGGC----------GGGGAGGGGAGCGACGCCGGTCACCGGC
TTCACTCTGACACGACACGTAGGAGCAGCGCGCGCGATCGCGGCCAACGAACACCGCTGCGGCCGCCGGCCCGTGCGGGT
GGGTCGTAACCGCACCGCGAGCTGGGCCCGTGCGGCCCTA---GCAGCAGGTGGGATCCACATGAAAGCCCAGTGGATCG
TGTGAGGCCCGGTTTTGGTCTGGGCCGCGCTCGGCCCGATCCGAACCTATAAACAACCTACCCACGTGAATTTACAAGTC
AACCACTACCTGCT--------------------TTCCTCTGCTCCTGCACGCCCGCGGCCATGGCGAATCCGGAGGCCA
GCAAGCCGCCGGGACCCGACGAGGCGGCGCCGGAGCGGCGAGCTGACGGGACGGCGCGCAAGGACGGCGCCGGCAACCCC
CCTCCCCCGCCGGTAAACCGCTCAGAGCACAAGCATCCAGCTAGCTAT-TATACCTGTCCGATTACTGTAGAATTCTCTC
TGATCAATTATTGGCCTGCAGTTCTTGGAGGTGACCTGCAGGAGCTCCGGCGAGGTGCGGCGGTTCGCGGCCGGGACGAC
CGCCCGGTACGCGCTGCACGCGGTGAACCGCAAGCTGGCCCCCGGCGCCCCGGCGGCGTTGCACGTGGAGGCGGCCAAGG
AGGGCGAGGAGCCGGTGTGCTTCGGCCCCACCGCGCCCCTCGCCGACTACGGCCGCGGCTGGCGCCTCCAGACCGTCACC
GAGCAGGACGCGCCGGACGCCCAT---------CACCACGCGCCGCCGCCCGGAGACGGGGGGAAGGGGGCTCGCGAGAG
GGAACTGCTGAGGAAGAAGGGCGCCTCCCTGTACCTCGCCAAGATCGGGCTCGCCTTCGTCTTCCTCTTCCTGCTCGGCG
GGCTCTTCACCTACCTGCTCGAGACCATCCCCGACATGATCCTCGCCTCCACTCCTCCTCAGTCCATTTAGCAGGATTTT
CGATCCAT---TCTGTCATCTTTGGGAGAGGAATTGTGTTC--TTGTGAACCTTGTATCAAAAACCACC--AGCTGATCA
AACAATTCCCGTTGCACGTTCGGAACAACAACAACGCCATGACGAAGGAATTCGTCTTCTGTACAATTTTCTTGAGTGAT
TCTTAAT------CCGCATTGCAAAGTCCAATTTGGCGCCCTCATCTTCA-GATAAATGTCAACGACGGCTGTATGATGA
TGA---ACCAATCAACGATTGGTATTGTAGCTAAAAAAATGCAGAGTTCTCTGTTCTTGAGAAACGAACTAT--------
-----------------------------CATAACGCAGGAGTATTATTATGTCATGTTTCCT--TGAACCAACACTAGA
GTGTCCAACACACCCCAAAGAACACACAATAAAACACACCATAGCGTGTCCGACACACCCCAGGAAAAACCAAGGAAATG
CAGCAGGGGTTTTGAGTGGATGAAAGGAAACTGCAGCAAAGTACAGTTCTGCATGTACCGATGCATTTTGTCATCTTGGA
AACAAGCTGATCTCACAATCCTCGTTGAACATACGCGTCATGG----------------CGAGGAAGAGGAAGAGGAATC
CGTCTTGTGTAATTCTCAATCCACTTAATTTTTGCAATTGTTAATCCGCTTTGCGAAGTGCAATTTGGTGCCTCCAACTT
CAGATAAATGGCAGTGACAACTGTGCCCGAGTATGATAATGAACCAGCCAACCAATGGC-----------GTAATCCAGC
TCTGTCTCGCTGTTCCTTGAGAAGTGAATGATTCTTAATCCGCTCTGCGAAGTCCGATTTGGCGTCTTCACCCCATCAGA
TAAATGTCAACAACAACTCTTACCCAAGCACAGCAATGAACCAATGATTACCTTTCCAACTTCCA---------------
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---------------------------------AGTAGTGCAGATCTCAGTTATATGGTAGAAT----------------
----------------AGACAATGTGCCTAACAGAGAAAT-----TCACAATACAGCACGGCATGAAAATCATCAGCTGA
GCATACCAACAGCTATTTTCTTCCGCGAAAAAAGATCAACACCTATTTTGTTCATCGTCACATGTTACACTTCAACTGCT
ACTGCTTATTTCCGTGTGAGGCAGTATG-TATGGTACACACCACCACCAAGCAAAGCAGGTGAAAAACTATGCCCTAGCA
AATTCATAA-GCCCTCATGAAAAATAATACTTATATCTTCTGTGTTGCCGATAGGCAGTTA----AAAATTTGGTGTCTT
AACCGCATCAGATAAATGTCCAGGACTGCT-TATGATGACGAACCAATGATTGGTATTCTACCTGAATGCAGAGTTGGCT
GTTCTTCAGAAATGAACGATTCCACAATAATACTTGGAAGACGCTGAATATTCAGCGGCACTACACATAGAGAATGAAGC
GCACGAGGGCCTCCTTCCGTTCGTAGGATTTCTAAAACTGAGTAGGGGAAACACATTTATTTTTTGGCACACAAATCAGC
GATAGTTATTATTTTTAATATCATGATAATGACTTTCACATAATACCAGAAAAGCTCCCAGCAGTTAACAACAACCATAA
AGAAAGCGTGTTAAAC-AAGCAAAGCTCGCAAGGGAAGACAAAATTTTACTCTTATTCCCAGTAGTGTAACCCGAAGAGA
ATTCTCACAGAAATACTTTTTTTTCCTTCATGCTTCCACTTCTCCATGTTTTAATTGTACGAGATACGGACTTGAACGTC
ACCGTGCTCTGTGTGGATTGCCCGAACACGTTGGGCCATGTCAAGAGGGAACTCGACATCGCCTTCG
>chr5B_1
TGGTGCGCCAGCTGCGTGATCGCCGTCCACCTGCACACAGACAG----AGGAGACACAAACGGACGAACACTGTTACGGC
TGGCCGGTGGCAAAACCACGCGATCTCGCGGCGGCGATGGACGGCGTGAAAGAGAAAGGCTTACGCGGTGGTCTCCTGGC
CGCCGCACTGGGTGCCGGTGCTGACGAAGAAGCCGGCGGGCTTGCCGGCGAGGCGCTGGCCGCGGCAGAGCTCCGCGGTG
GAGTCGAAGAAGGCCTGCATCTGCGCGGCCATGGCGCCGTACCGCGCGGGGAAGCCGAAGAGGAACCCGTCGGCGTCGGG
GAGCCCGCCGGGGTCCGCCACGGGGATCCCCTCCGCGTCCATCTCCGCGGCGGCCTCCAGCGCGCCCATCCGGGCCAGCA
CGGCGCGGGGCAGCGTCTCCGGCACGCGGAGCAGGATCCCCCGCGCGCCCGGCACGGAACCCACCCCGCGCTGCACCGCC
CGCGCCAGGCGCCGCACGTTGCCATACATGGAGTAGAAGACGACGTAGATGCGGACCTGGCGTGGCGACGGCGCTGGCTC
CGGCTCCGGC---------------------TCCGGCGCGGCGGTGGCCGGGGCCGGCTCTGGTGCGGTGGT--------
-------------------GGCCGGGGCCGGGATGAAGGTGCGGTCGCGGCGATGCGGGGG---CGGGGGGCGCTGGCTC
TTGCTGGGCAGGCAGCCGCCGCCCTTGCCCATCGCTGCCGGCCTGCCGCGGCGGGGAGGGGAGCGACGCCGGTCACCGGC
TTCACTCTGACACGACACGTAGGAGCAGCGCGCGCGATCGCGGCCAACGAACACCGCTGCGGCCGCCGGCCCGTGCGGGT
GGGTCGTAACCGCAC-GCAAGCTGGGCCCGTGCGGCCCTGGCAGCAGCAGGTGGGATCCAAATGCAAGCCCAGTGGATCG
TGTGAGGCCCGGTTTTAGTCTGGGCCGCGCTCGGCCCGATCCGAACCTATAAACAACCTACCCACGTGAATTTACAAGTC
AACCACTACTAGTTTCCCTCAAAAACAAAAAGTATTCCTCTGCTCCTGCACGCCCGCGGCCATGGCGAATCCGGAGGCCA
GCAAGCCGCCGGGACCGGACGAGGCGGCGCCGGAGCGGCGAGCTGACGAGCCGGCGCGCACGGACGGCGCCGGCAACACC
CCTCCCCCGCCGGTAAGCCGCTCAGAGCACAAGCATCCAGCTAGCTTACTATATCTGTCCGATTACTGTAGAATCCTCTC
TGAGCAATTATCGGCCTGCAGTTCCTGGAGGTGACCTGCAGGAGCTCCGGCGAGGTGCGGCGGTTCGCGGCGGGGACGAC
CGCCCGGTACGCGCTGCACGCGGTGAACCGCAAGCTGGCCCCCGGCGCCCCGGCGGCGCTGCACGTGGAGGCGGCCAAGG
AGGGCGAGGAGCCCGTGTGCTTCGGCCCCACCGCGCCCCTCGCCGACTACGGCCGCGGCTGGCGCCTCCAGACCGTCACC
GAGCAGGACGCGCCGGGCGCCCATCACCACGCGCACCACGCGCCGCCGCACGGAGACGGGGGGAAGGGGGCTCGCGAGAG
GGAGCTGCTGAGGAAGAAGGGCTCCTCCGTGTACCTCGCCAAGATCGGGCTCGCCTTCGTCTTCCTCTTCCTGCTCGGCG
GGCTCTTCACCTACCTGCTCGAGACCATCCCCGACATGATCCTCGCCTCCACTCCTCCTCAGTCCATGTAGCAGAATTTT
CGATCCAT---TTTGTCATATTTGGAAGGGAATTCGTGTTCCTTTGTGAAACTTGTACCAGAAACCACCACAGCCGATCA
AACAATTCTCAACAG----------------CAACACCATGACGAACGAATTCGTCTCCTGTACAATTTTAATTTTCTTG
TGTAATTGTTAGCCCGCATTGCGAAGTCCAATTTGGTGTCCTCATCTTCAGGATAAATGTCAACGACGGCTGTATGATGA
TGATGAACCAATCAACCATTGGTATTCTAGCCC----AACGCAGAGTCCTCTGCTCTTCAGAAACGAACTACTATCATAA
CCGGAAGACGTTGAAAATTCAAGAGCAAGCAAAACGCAGGAGTATTATCATGTCATGTTTTTTTCTGAACCAAGACTAGA
GTGTCCA-----------------------------------------TCCAACACACCCCT------------------
-----------------------------------------------------------GATGCATTTTGTCATCTTGGA
AGCCAGCTGATCTCGCAGTCCTCGTTGAACATACACATAACGGCGTCACGGAGACGCGACGAGGAAGAGGAAGAGGATTC
CGTCTTCTGTAATTATCAATCCGCTTAATTTTTGCAATTGTTAATCCGCTTTGCGAAGTGCAATTTGGTGCCTCCAGCTT
CAGATGAATGGCAGGGACAACTGTGCCCGAGTATGATAATGAACCAACCAACCAATGGCTGGAGCTCTAGGTAATCCAGC
TCTGTCTCGCTGTTCCTTCAGACGTTAACGATTCTTAATCCGTTCTGCGAAGTCCGATTTGGCGTCTTCACCCCATCAGA
TAAATGTCAACAGCAACTC-TACCCACGCACAACAATGAACCAATGATTAGCTTTCCAAGTCAACAGCAACTCTACCCAC
GCACAACAATGAACAATGATTAGCTTTCCAAGTACTCCCTCTGTCCCATAATATAAGAGCGTTTTTGACACTAGCGTAGT
GTCAAAAACGCTCTTATATTATGGGACAGAGGGAGTAGTTCAAAGCTCAGTTATACTGTAGAACAGACTTTCAGGAGTTC
AATGGTAGAACACACAAGACAATGTGCCTGACACGGAAATAGACATCACAATATGGCACGGCATGAAAATCATCAGCTGA
GCATATCAACAACTATTTTCTTCGGCGAAAAAAGATCAACACCTATTTTGTTCCTTGTCACATGTTACAGTTCAACCGTT
ACTGTTTATTTCCGTGTGTGGCAGTATGCTATAGTACACACCACCACCAAGAAAAGCATGTTAAA---------------
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>SNPs
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--------------------------S-------S-SSSS-SS-------------------------------------
-S------------------------------------------------------------------------------
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-----------------------------------------------------------------------S--------
----------------------------S------------S----------S---------------------------
-----------------S-SS--S--------------------------S-----------------------------
-------------------------------S-------------------------------S--------SSSSSSSS
SSSSSSSSSSSSSSSSSSS---S--------------S--------------S--------SSS----S---------S-
------SS--------------------------------------------------------------------S---
----------------------------------------S-S-S-------S---------------------------
----------------------------S--S-------S---------------------------------------S
---S----------------------SS------------------S---------------------------------
---------------------------------------------------S----------------------------
-----------------------S-----S------------------------S--S---------------------S
-----------------------------------------------------------S--S-----------------
-----S--------S-----------------------------------------------------------------
----S---------------------------------------------------------------------------
----S-----------------------------------------------------------S---------------
--------------------S-----S-----------------S-------------S---------------------
------------------------------------S-------------------------------------------
--------------------------S--------------------------------------------------S--
-----S-SSSS---------------------------------------------------------------------
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--------------------------------------------S-----------S----------------S------
---------------------------------S--------------S------------S-SSS--------------
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-----------------------------------------------------------------S--------S-----
-------------------S-S----------------------------S-----S-----------------------
-------S-S------------------------------------------------S----------S----------
-S-------------------------------------------S----S---------------S-----S-------
S-SSSSSSSS-------S------S---S-S-SS------S-------S----SS---SS-SSSS-----S------S--
------------------------S---S-S-----------S-S----------------SS----S------------
--------------------------------S------S--------S------S-S--S-------------------
-----------------SS--S------------------------SS----------S----------S---------S
----SS-S--S-S---S----SS------------S------S--S--------------S----------S----S---
---S---S--------S---------------S---------SS-------------S-S--S--SSSSSSS-SSSS---
-------------------------------------------------------------------S-S-------S--
-------------S---------S-------------------------------------------
>forward_1092
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--------------------------------CTTTCCTCTGCTCCTGCACA----------------------------
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>reverse_3262
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-------------------------------------------------------------GTTGAACGCAGAGTTGGCT
G-------------------------------------------------------------------------------
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