>input_sequence_73492
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-------------------CCCCAAGCAATCAACAA--------CCACCGAAGCAGCCTCCCCTCCCCACCCCCACCCCG
CAGCAATGGCTCGCACGAAGCAGACGGCGAGGAAGTCGACCGGCGGGAAGGCGCCGAGGAAGCAGCTGGCGACCAAGGCG
GCGCGCAAGTCGGCCCCGGCCACTGGCGGGGTGAAGAAGCCCCACCGCTTCCGCCCCGGCACCGTCGCGCTCCGTGAGAT
CCGCAAGTACCAGAAGAGCACGGAGCTGCTGATCCGCAAGCTGCCGTTCCAGCGCCTGGTGCGGGAGATCGCGCAGGACT
TCAAGACCGACCTCCGCTTCCAGAGCTCCGCCGTTTCCGCGCTGCAGGAGGCCGCCGAGTCGTACCTCGTCGGGCTCTTC
GAGGACACCAACCTCTGCGCCATCCACGCCAAGCGCGTCACCATCATGCCCAAGGACATCCAGCTCGCCCGCCGCATCCG
CGGGGAGAGGGCCTAGGTAGCGGTAGCCGCGTGCGTGCGTTATCAGAGAGTCCTACTGTGATGTTCCGGTTTCAGAGCTT
GGTGGTGTAGCTTAACATGTTCCTGTCCGCTCTCATCGTTGTCTTGCCATATGTAGCTCCTCGCTGCGATGAATTATCAA
TGAAGAGTGCAGTTATCA--------------------------------------------------------------
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>chr3B_1_TraesCS3B01G410200
GAGAGTGGTACACCATATTGCCCATTTGGTCCAATTTAACACGAGAGGGCCAAAATTGTTTCCGGAGCAGCGGCCCACTA
CGTGTGGCGCTTGCTGGGTAGCGAACGAAAGCCAGGCATGACTGAAAGGTAATCGGACAGTTGAAAACATACAAACCGAA
GATCCAACGGCTGAGAATGCTAGTGGCTTGAGATGGTTGGAAAGATGCGCAGTTTTAATATCTCTAAATGTTCTAACATT
TTAGTGTGTTTATTCACTAATTTCAGTTCGTATATAGCTCATATTAAAATATCCTAAACATTTTATATGTATGAATTGAG
GGATTATTTAAAAAGTAGCTATTAATAAAAACTTAAAAAGACAAATCAAAAACATATACTCCCTCACTTCCTGAATATTT
GTCTTTTTAGAGATTTAAAA-----------------------------CATATTTTAGAGTGTAGATTCATTTATTTTG
CTCCGTATGTAGTCAGTTGTTGAAATCATTAGAAAGACAAATATTTAGAAACAGAGAAAGTACTATATGTACCCACAAGA
TAAAATTTGAGTTTCTCGCAAAAAAAGAAAGATAAAATTTGAGTTCTTGTTTGAAACTCGCAGTAAGAAATATGAAGCCG
GGAAAAAGATTTGGACCCATTTGTTATTCACCATAAACACTACACGACAACTG-AAAAAGGAACGCTACACCGTGCAAGG
CCCACTGTCAGATCAGCCAATCAGAATCGAGGAATCCTGGCCAACGATCCGCGTGACTCTACACAGACACAGTCACACCC
CAACCAATGAGAAACCTGTAATCGCCTTCCCACGGATCGCACCCCACGATCCGCGTGCTCTAACCCAAAAACCAATCTCA
GCCGCCCACCCGCCACCAATCCAACGCCCCAAATCCATCTTCCATCCACTCGACCTCGCCGCAGCGCC------------
-------GAAATTTTTCTAGTATCCCGCCGGCTCCT-CCCTACTTAACCGCCCCCATCCTCTCCAT---------CCCAT
CTCATCCAGCTCCCAAATCCCCCAAGCAATCAACAA--------CCACCGAAGCAGCCTCCCCTCCCCACCCCCACCCCG
CAGCAATGGCTCGCACGAAGCAGACGGCGAGGAAGTCGACCGGCGGGAAGGCGCCGAGGAAGCAGCTGGCGACCAAGGCG
GCGCGCAAGTCGGCCCCGGCCACTGGCGGGGTGAAGAAGCCCCACCGCTTCCGCCCCGGCACCGTCGCGCTCCGTGAGAT
CCGCAAGTACCAGAAGAGCACGGAGCTGCTGATCCGCAAGCTGCCGTTCCAGCGCCTGGTGCGGGAGATCGCGCAGGACT
TCAAGACCGACCTCCGCTTCCAGAGCTCCGCCGTTTCCGCGCTGCAGGAGGCCGCCGAGTCGTACCTCGTCGGGCTCTTC
GAGGACACCAACCTCTGCGCCATCCACGCCAAGCGCGTCACCATCATGCCCAAGGACATCCAGCTCGCCCGCCGCATCCG
CGGGGAGAGGGCCTAGGTAGCGGTAGCCGCGTGCGTGCGTTATCAGAGAGTCCTACTGTGATGTTCCGGTTTCAGAGCTT
GGTGGTGTAGCTTAACATGTTCCTGTCCGCTCTCATCGTTGTCTTGCCATATGTAGCTCCTCGCTGCGATGAATTATCAA
TGAAGAGTGCAGTTATCATCATATGAATCTCATTTCAGTGTT-----------------TTTCTCTGTGATGCGTACTGC
TTTCTTGTTCTTCATTTATGTTGTCTAGCTGTATGATGGTTGTGATGTGATGCAGAGGAAGAACGCGGTTGCCGCATAAT
AATTTTCATCC------------CTTTCCTCATTGGATTTTTCAGTGTTCGTTTTCTTCCACTACTTTATTTTTGGATTT
TTTACTCATGTTTTCTGATGGCGCTGCTGTGATGGAGATGAAGAACAGTATCGCCGCTTAATGATTACCGTCCATGGATA
AGCCCACCGCCGTTGTGTTGC-----------------TCCATATTTGTTCCCCAGATTTTGTTCTGGAAGTTTCCAGGT
GCTCCCCGTTTGCCTCTTTGGCCCTTCC-GTTGGTGGTTGGCGGAAGGAATCCAATAGTAGCTGAAAACCAACGCTGTCC
TCCCAAGG--CTGGCCCGCTGTCATTGACTTGTCGACGTCGTGGGGGTGAGACCGAATCCAGCAAAGTAGGAAAAGGGAG
GGGAGAAACTTCTTTTACTTCCGCGCGGCGATCTCCACTCCCGTCCAAACCCATCCAACTCACCGCCCAAGGTCGCCGCG
GATCCAGTAGCCTCGT-CGGAGCGGAGATGAAGATCACGGCGCTCGTCGTGCTGAAGCCGTCGGCGGGAGGCGCCGGGGG
CTCCTCCTCCAGCGGCGGGCAGGGCTCGGAGGCGCTCGTGCTGGCCAACGCCACGGACGTCAGCCACTTCGGCTTCTTCC
AGCGCGGCGCCGCCCGCGAGTTCATCGTCTTCGTCGCCCGCACCGTCGCCCAGCGCACCCAGCCCGGCCAGCGCCAGTCC
GTCCAGCACGAAGGTAACCACCCCTCCTCAGATCTGCTTGCCGCTGCCCTCTAGGTCTAGCTTACTTTGTGATCCGATGC
TCAGATCCGGGGTCTGGGTTTGGAA--------------------------CTACAGGCCTCGCAGTAGTTTGATTCCTA
GAGCAAGGCCAACATGGGTGATTCCGGCGATCTCTGCAAAGTAGCCTGTAGCCC
>chr3B_1
GAGAGTGGTACACCATATTGCCCATTTGGCCCAATTTAACACGAGAGGGCCAAAATTGTTTCCGGAGCAGCGGCCCACTA
CGTGTGGCGCTTGCTGGGTAGCGAACGAAAGCCAGTCATGACTGAAAGGTAATCGGACAGATGAAAACACACAAACCTAA
GATCCAACGGCTGAGAATGCTAGTGGCTTGAGATGGTTGGAAAGATGCGCAATTTTAATATCTCTAAATGTTATAACATT
TTAGTGTGTTTATTCACTAATTTCAGTTCGTATATAGCTCATATTAAAATATCCTAAACATTTTATATGTATGAATGGAG
GGATTATTTAAAAAGTAGCTATTAATAAAAACTTAAAAAGACAAATCAAAAACATATACTCCCTCACTTCCTGAATATTT
GTCTTTTTAGAGATTTTCAAATGGACTACCACATACGGATGTATATAAGCATATTTTAGAGTGTAGATTCATTTATTTTG
CTCGATATGTAGTCAGTTGTTGAAATCATTAGAAAGACAAATATTTAGAAACAGAGGAAGTACTATATGTACCCACAAGA
TAAAATTTGAGTTTCTCACAAAAAAAGAAAGATGCAATTTGAGTTCTTGTTTGAAACTCGCAGTAAGAAATATGAAGCCG
GGAAAAAGGGTTGGACCCACTTGTCATTCACCATAAACGCTACACCACAATTGAAAAAGGGAACGCTACACCGTGCAAGG
CCCACTATCAGACCAGGCAATCAGAATCGAGGAATCCTGGCCAACGATCCGCGTGACTCTACACAGACACAGTCACACCC
CAACCAATCAGAAACCTGTAATCGCCTTCCCACGGATCGCACCCCATGATCCGCGTGCTCCAACCCAAAAACCAATCTCA
GCCGCCCACCCGCCACCAATCCAACGCCCCAAATCCATCTTCCATCCACTCGATCCCGCCGCAGCGCC------------
-------GAAAATTTTCCAGTATCCCGCCGGCTCCT-CCCTACTTAACCGCCCCCATCCTCTCCAT---------CCTAT
CTCATCCAGCTCCCAAATCCCCCAAGCAATCAACAA--------CCACCGAAGCAGCCTCCCCTCCCCACCCCCACCCCG
CAGCAATGGCTCACACGAAGCAG---------------------------------------------------------
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>chr3D_690
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-------------------------------------------------------------------------------G
CCCACGGCCAGACCAGCGAACGAGAATCGAGGGACCCTCGCCAGCGATCCGCGTGACACTACACCCGC----TCACGCCC
CAGCCAATGAGAAACCTGCAATCCCCTTCCCACGGATCGCACCCCACGATCCGCGTGCTTCACCCCGAGAACCAATCTCA
GCCGCCCACCCGCCACCGATCCAACGCCCCGAATCCATCTTCCCTCCACTCGACCCCGCCGCAGCGCC------------
-------G-------------------CCGGCTCCTCCCCTACATAACCGCCCCCATCCTCTCCAT---------CCCA-
--------ACTCCCAAATCCCCCAAGCAA---ACAA--------CTACCGAAGCAGCCTCCCCTCCCCCACCCTACCCCG
CAGCAATGGCGCGCACCAAGCAGACGGCGAGGAAGTCGACCGGCGGCAAGGCGCCGAGGAAGCAGCTGGCGACCAAGGCC
GCCCGCAAGTCGGCCCCGGCCACCGGTGGCGTGAAGAAGCCCCACCGCTTCCGCCCCGGCACCGTGGCGCTGCGTGAGAT
CCGCAAGTACCAGAAGAGCACGGAGTTGCTGATCCGCAAGCTGCCCTTCCAGCGGCTGGTGCGTGAGATCGCGCAGGACT
TCAAGACCGACCTCCGCTTCCAGAGCTCCGCCGTGTCCGCGCTCCAGGAGGCCGCCGAGGCGTACCTCGTCGGGCTCTTC
GAGGACACCAACCTCTGCGCCATCCACGCCAAGCGCGTCACCATCATGCCCAAGGACATCCAGCTCGCCCGCCGCATCCG
CGGGGAGAGGGCTTGAGTAGCGGTAGCCGCGTGCGTGCGTTGTCAGAGAGTCCTACTGTGATGTTCCGGTTTCAGAGCTT
GGTGGTGTAGTT-AACATGTTCCTGTTCGCTCTTGTCGTTGTCTTGCCATATGTAGCTCCTTGCTGCGATGAATTATCAA
TGAAGAGTGCAGTTATCATCATCTGAATCTCATTTCAGTGTTCATTTTT------------TCTGTGCGACGTGTGTTGC
TTTCTTGTTCTTCAGTTTCGTTGTCTAGCT------TGTTTGTGCCGTGAAGCAGATGAA-------------GCGTAAT
AATTTCTATCCATGGATTAGACA-TCCCGTCATTGGATTGTTCCCGTATTCTTTCACT---CGAATTGATTTTTCGATCT
TTCGCTTGGGTTTTCTGATGGTGCTGCTGTGATGGAGATGAAGAACAGTATCGCCGCTCCATGATTTCCGT-CATGGATA
AGCTCACCGTGATTTGGAATTGTGTTGTTTCC----------TATTTCTTCCCCAGATTTTGTTTTGGAAGTTTCCCCGT
GCTCCGCGTTTGCTTGTTTGCCGCTTCT-GTTGGGCGTCGGCGGAAGGAATCCAATAGTAGCTGAAAAACAACGCTGGCC
GCTAACAACCCTGGCCCGCTGTCATTGACTTGGAGACGTCGTGGGGGTGTGACCGAATCCAGCAAAGTAGGAGACGGGAG
GGGGGAAGCTTCTTTTGCTTCCGCGCGGCGATCTCACGTCCAAACCC-ATCCATCCAACCCACCGCCCAAGGTCGCCGCG
GATCTAGCGAGCCTCGGCGGAGCGGAGATGAAGATCACGGCGCTCGTCGTGCTGAAGCCGTCGGCCGGAGGCGCCGGGGG
CTCCTCCTCCAGCGGCGGGCAGGGCTCCGAGGCGCTCGTGCTGGCCAACGCCACGGACGTCAGCCACTTCGGCTTCTTCC
AGCGCGGCGCCGCCCGCGAGTTCATCGTCTTCGTCGCCCGCACCGTCGCCCAGCGCACCCAGCCCGGCCAGCGCCAGTCG
GTCCAGCACGAAGGTGACCGCCCCTCCTCAGATCTGCTTGCCGCTATCCTCTAGGTCTAGTTTACTTTGTGATCCGATGC
TCAGATCCGGGGTCTGGGTTTGGACTGATTTTTCCGGGGGTCAGTCTTCTGCTACGGGGCTCGCAGTAGTTTGATTCCTA
GAGCAAGGGCGACATGGGTGATTCCGGTGATCTCTGCAAAGTAGTCTGTAGCCC
>chr3A_766
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---------------------------------------------------------------------------CACCG
CAGCCAATCAGAAATCTGCAATCCCCTTCCCACGGATCGCACCCCACGATCCGCGTGCTCCACCCCAAGACCCAATCTCG
GCCGTCCACCCGCCACCGATCGAACGCCCCAAATCCATCTTCCCTCCACTCGTCCCCGCCGCAGCTCCCAAAATTTCCCA
GTCTCCCG-------------------CCGGCTCCTCCCCTACATAACCACCCCCATCCTCTCCATCCCATCTCACCCA-
--------GCTCCCAAATCCCCCAAGCAA---GCAAGCAAGCAGCCACCGAAGCAGCCTCCGCTCCCCTCCCCGACCCCG
AAGCAATGGCGCGCACGAAGCAGACGGCGAGGAAGTCGACCGGAGGCAAGGCGCCGAGGAAGCAGCTGGCGACCAAGGCC
GCCCGCAAGTCGGCCCCGGCCACCGGCGGCGTGAAGAAGCCCCACCGCTTCCGCCCCGGCACCGTCGCGCTCCGTGAGAT
CCGCAAGTACCAGAAGAGCACGGAGCTGCTGATCCGCAAGCTGCCGTTCCAGCGGCTGGTGCGGGAGATCGCGCAGGACT
TCAAGACCGACCTCCGCTTCCAGAGCTCCGCCGTGTCCGCGCTGCAGGAGGCCGCCGAGGCGTACCTCGTCGGGCTCTTC
GAGGACACCAACCTCTGCGCTATCCACGCCAAGCGCGTCACCATCATGCCCAAGGACATCCAGCTCGCCCGCCGCATCCG
CGGGGAGAGGGCCTGAGCAGCGGTCGCCGTGTGCGTGCGTTGTCAGAGAGTCGTGCTGTGATGTTCCGGTCTTAGAGCTT
GGTGGTGTAGCT-AACATGTTCCTGTCCGCTCTCGTCGTTGCCTTGCCATATGTAGCCCCTTGCTGCGATGAATTATCAA
TGAAGAGTGCAGTTATCCTCATATGAATCTCGTTTCAGTGTTCGTTTTTCTGAATCTCATTTCTGTTGGATGTGTACTGT
CTTTCTGTTCTTCAGTTTCGTTGTCTAGCTGTATGCTGTTCGTGCTGTGAAGCAGAGGAAGAGCACCACTGCCGCATAAT
AATCTTCATCCGTTGATTAGCCCCTTCCGTCATTGGATTGCGTCCTTCGTCTTCCACT---CTATTTTAATTCTGGATTT
TTTTCTTAATTTTCGGATGGTGTTACGC-TGATGGAGATGAAGAACAGGATCGCCGCGTCATGATTTTCGT---------
--CTCACCGTGGTTATGTTGTTCCATATTGAGATATCTTCCATATTTGTTCCCCAGATTTTGTTTTGGAAGTTTCCAGGT
TCTCCGCGTCTGCCTCTTTGCCGCCTCCTGTTGGTGGTTGGCGGAAGGAATCCAGTAGTAGCTGAAAACCAACGCTGGCC
GCCCAAGG--CTGGCCCGCTGTCATTGACTTGTCGACGTCGTGGGGGTGAGACCGAATCCAGCAAAGTAGGAAACGGGAG
GGGAGAAGCTTCTTTTACTTCCGCGCGGCGATCTCCCGTCCAAACCC-ACCCATCCAACCCACCGCCCAAGGTCGCCGCG
GATCTAGCAGCCTCGT-CGGAGCGGAGATGAAGATCACGGCGCTCGTCGTGCTGAAGCCGTCGGCCGGGGGCGTCGGGGG
CTCCTCCTCCAGCGGCGGGCAGGGCTCCGAGGCGCTCGTGCTGGCCAACGCCACGGACGTCAGCCACTTCGGCTTCTTCC
AGCGCGGCGCCGCCCGGGAGTTCATCGTCTTCGTCGCCCGCACCGTCGCCCAGCGCACCCAGCCCGGCCAGCGCCAGTCC
GTCCAGCACGAAGGTAAACGCCCCTCCTCAGATCTGCTTGCCGCTGCTCTCTAGGTCTAGTTTACTTTGTGATCCGATGC
TCAGATCCGGGGTCTGGGTTTGGACTGATTTTTCCGGCGGTCAGTCTTCTGCCACGGGTCTTACGGTAGTTTGATTCCTA
GAGCAAGGCCAACATAAGTTA------TGATCTCTGCAAAGTAGCCTGTAGCCC
>SNPs
-----------------------------S--------------------------------------------------
-----------------------------------S------------------------S--------S-------S--
---------------------------------------------------S--------------------S-------
----------------------------------------------------------------------------S---
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----------------SS--------------------------------------------------------------
---SS---------------------------------------------------S-----------------------
-----------------S---------------SS---------------------------------------------
--------SS---------S----S-------------S------S----S-------S---------------------
------------S-------------------------------------------------------------------
------------------------------------------------------------S-------------------
-------------------------------------------------------S------------------------
-----------S-----S--------------------------------------------------------------
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----------------------------------------------S--------------------------------S
--S--------------------S-----S--------------------------------------------------
------------------------------------------------------S-------------------------
----------------------------------S------------------------S--------------------
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--------------SS-------------------------S--------------------------------------
------------S---------------------S--------------------------S------------------
----------------------------------------------------------------S--S----S-------
--------------S--SS----------------S--S-----S-----S-----------S-S-SSS-----------
--------------------------S-S----------S---SS-SS-SS---SSS-SSS---S---------------
---S--S-S------------S-------------------------------------S------S----S--------
---S-----SS---S-----S-------------------------------------------S---------------
-----S--------------S-S------------------------------------------------------S--
S-------------------------------------------------------------------------S-----
-------S----------------------------SS---SSS--SS-----------S--------------------
----S--S---------------------------------------------------------S--------------
---------------------------S----------------------------------------------------
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-------------------S----------------------------------------S-------------------
------------------------S------------------------------S--S---------------------
---------------------------S--------------------------
>forward_978
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------------------------------------------------------------------------------CG
CAGCGCCGAAATTTTTCT--------------------------------------------------------------
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>reverse_2580
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-------------------ACCCCTCCTCAGATCTGCTT-----------------------------------------
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