>input_sequence_73490
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----ATGTCTGATCTTGACGTTCAGATCCCAACTGCCTTTGGTATGCCTGTGGTTTTCCATCCAAATTATCACTGAAATT
GCTTGCACTGTTTGGAATGTCTTGCTTAATTGTTTTGCTGCTACATAAAGACCCCTTTGCCGAGGCGAATGCTGGGGACG
CTGGTGCAGCTGCCGGATCAAAAGACTACGTTCATGTACGCATCCAGCAGCGTAATGGTCGCAAGAGCCTGACCACTGTC
CAGGGCCTGAAGAAGGAGTTCAGCTACAGCAAGATCCTCAAAGACCTCAAGAAAGAGTTTTGCTGCAATGGTACAGTTGT
CCAGGACACAGAACTTGGACAGGTGTGTTGAAACAACGAGCAAACTCGTCATCCCTTATCATGTTCATTTCTTTCGCAAT
TTTCTCATGCAAGCTAGTTGTCTTGATCATTGTTGCTCTTTTCCATTCCAGGTCATTCAACTCCAGGGTGATCAGAGGAA
GAACGTCTCAAACTTCCTTGTCCAGGTAAACATCT--CTCTTCATCTTATGCTCGGTATGGTTGCAGTTCACAAACATGG
ATGAAGATGTCTAATATGA--TGTGTC-GACACAGGCCGGCATTGTGAAGAAGGAACACATCAAGATTCATGGTTTCTGA
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>chr2D_1_TraesCS2D01G224400
TCCTCCTCGACCGCCTCCCAGGGTATGCTCCCCTGCT--CTGATTCTTGGTTGATCTCTATGGTCTGTTGTTGATCTGCA
GTTAAGTTATGTATTAGGGCCCCCTTCTAGGGAGAGGATCTGTATGATTATGGAT-------------CGATCCTGTTCG
TCTTCCGTGGTTCTTTCTTAAGCCGTTT--AGGGTCGAGCCGTGTAGGTATTCTTGGATCTCGTTCTCTTTCGACCCCTA
TTGATAAGGTTGTCTGTTCTTATATATACTGTACAATCGGGTATTGATTGTGATATCTACGATGCTTTTTTTTAAGAAGA
AGATTAGGGATTCCACTG------------TTCTGTACAAACATAGTATGATTAGCTCCATACATGTATTTTCATTTCGT
AGAAAAAA-AACTTTCTGAGCGAAGGGGATAAATTTGTCAGGACAACAAAATTATGTTA-AGACTAGCACTGCACTTGCT
TGTACATATTAAGATATGCTATTTGTGATCTTGAAGTTGAAAGAAAACTTTTTTTAGGAAAAACTCC------AGTCCGG
ACTACCTAAGAAAAATTGAAGAAAACAGTGATCATAAAGGATGATCAAAATCACATGTA-------TAAACAAACTGTAA
AGAATGGTAGAAGACATCAAAGCTCGCCGCACGAATCGTGCAGGTTGCTCCACTAGTTTTGTGAAATAGTTCTTCCATAA
TCATTTAGGCCCAATTAGAACAGTGATGATTGCTTGTGGTGTAAGTGTGTTGTCATAAGTTTGGCTTTGACTGTTGTTCC
TTGGTTTTGGTATAGAAATTGCTCGCTGATTTGTTGATTCTATCTTTCTTTAATTTAGCTGTATGAAATAAGCACCTCTG
ATGCAAATTATTTAGTCAGTGGTCAAAGCCATGGCATGCTTGGTTGTACAAATGAGAAATTACGAAGCTGTCATTGACCT
CTCTATACTGCATGCCCTAATGATTCATTTTCTTACTGTGTACAGTTCTTGGTGTAGCTTTTGCCACTCTCACCAGGAGA
TTTCATGTCTGATCTTGACGTTCAGATCCCAACTGCCTTTGGTATGCCTGTGGTTTTCCATCCAAATTATCACTGAAATT
GCTTGCACTGTTTGGAATGTCTTGCTTAATTGTTTTGCTGCTACATAAAGACCCCTTTGCCGAGGCGAATGCTGGGGACG
CTGGTGCAGCTGCCGGATCAAAAGACTACGTTCATGTACGCATCCAGCAGCGTAATGGTCGCAAGAGCCTGACCACTGTC
CAGGGCCTGAAGAAGGAGTTCAGCTACAGCAAGATCCTCAAAGACCTCAAGAAAGAGTTTTGCTGCAATGGTACAGTTGT
CCAGGACACAGAACTTGGACAGGTGTGTTGAAACAACGAGCAAACTCGTCATCCCTTATCATGTTCATTTCTTTCGCAAT
TTTCTCATGCAAGCTAGTTGTCTTGATCATTGTTGCTCTTTTCCATTCCAGGTCATTCAACTCCAGGGTGATCAGAGGAA
GAACGTCTCAAACTTCCTTGTCCAGGTAAACATCT--CTCTTCATCTTATGCTCGGTATGGTTGCAGTTCACAAACATGG
ATGAAGATGTCTAATATGA--TGTGTC-GACACAGGCCGGCATTGTGAAGAAGGAACACATCAAGATTCATGGTTTCTGA
ACAACTGCCAGCTCCATATCAGAGTCTACATGCAAAGCAGCTATATATTGGTGGTGCAGTATATTTAGTTGTGTGCTAGC
GCAAGCAGGCGTTACCAGCTTGCGCGCTCTGAGTATACGGAAAATCTAGCATAGCCCACCTCTCTGCGTGTATGCTTGTT
ACCCTTGTGTTGAAACTTTGTAAGGAGCACCATCGTTAGATGGCTTGTTACCCTCTCCCATCAAGGTTGAATAATAATAT
ATGCTTTCTTAAATGTGGTGTCCTTCGTATCATCCATTTTGGTTTGACATTCGCCATTCCAGCCGGTGTCGATACATCTA
GTCTTGAACTGTGTCTGC------TTGATCACTGAATTAAACTGCCTGCTTGGCATGCACCAATTATTCTGGGCCCGGTT
GCACTTGGTTCTTCTGGGTCTACTGAAT----ACTGTAGCCTCATTCATGGCAACAGTGCC-------------------
---------TGGTGCTGCGGCTACTCCAAGCTGCGAATGGCTTGGATCTCATTACTGTTTGAGG-TACGGTTTAGCTTTA
TTCTGCACACTGTGCGGCTCTCTACAAACAGGGAAACGCTTCCCATCTTACGTCAGACCCCTCATTGACCGTTGATGCAC
TTTTGATCC-ACGGAGGGCATCTACATTTT---------TGGATAGCTGGTCCAGCAAGGCATGTCTTGCAGGGACTGTT
TTGG----------TTGTGATCAGACAT----------------------------------------------------
------------------------------------------------------TAAAACTATAAACATCGGTCTCGTTT
TGGTTGTGATCGGCTGCTATAGGGTGATATGCATTTGAATTTCATATTGGTCTGACCTGGACGAACGTTTAGGGGATGCG
ATTGGATGACCGGCTCCTGCATCACTGCCCGGACAGATACCGTGTTCGTTTTGGAAGTCAGCGTTTGAAGAAGGAAAAAA
CACTTACCCT-AAAAATTGAGGAGTTAATATTTTTACCAACGACAAAATCACTATTTTCTCATCGATACCGACAAAATCA
TTCTTTCTCGCTGACACCCCCAGCCCACCAAAAACTGAGGCTGAGT
>chr2A_1
TCCTCCTCGACCGCCTCCCAGGGTATGC--CCCTTCTCCCTGATTCTTGGTTCATCTCTATGTTCTGTTGTTGATCTGCA
GTT-AGTTCTGTATTAGGATCCCCTTCTATGGAAAGAATCCGTATGATTATGGATTCATCTTGACTTGCGATCCTGTTAG
TCTTCCGTGGTTATTTCTTAGGTCGTTTATAGGGTCGTGCCGTGTAGGTATTCTTGGATCTCGTTCTCTTTCGACCCGTA
TTGATATGGTCGTGTCTTATATA--------TACAATCGGGTATAGATTTTGATATCTACGGTGTTTTTTTT---GAAGA
AGATTAGGGATTCCAATCCTGATGCTATTTTTCTGTACAAACATGGTATGATTAGCTTCATACGTGTATTTTCATTTCGA
AGAAAAGT-AACTTTTTGAGTGAAGGGGATAAATTTGTCAGGACAACAAAAGTATGTTA-AGACTAGCACTGCACTTGCT
TGTACATATTAAGATATGCTATTTGTGATCTTGAAGTTGAAAGAAAACATTCTTTAGGAAAAACTCC------ACTCCGG
ACTACCTAAGAAAAATTGAAGAAAACAACGAGCATAAAGGATGATAAAAATCACATGTA-------TAAACAAACTGTAA
AGAATGGTAGAAGACATCAAAGCTCGCCACACGAATCGTGCAGGTTGCTCCACTAGTTTTGTGAAATGGTTCTTCCATAA
TCATTTAGGTCCAATTAGAACAGTGATGATTGCTTGTGGTGTAAGTGTGTTGTCATCAGTTTGGCTTTGACTGTTGTTCC
TTGGTTTTGGTATAGAAATACCTCACTGATTTGTTGATTTTATCTTTCTTTAATTTAGCTGTATGAAATAAGCACCGCTG
ATGCAAATTATTTAGTCAGTGGTCAAAGCCATGGCCGGCTTGGTTGTACAAATGAGAAATTACGAAGCTGTCATTCACCT
CTCTAGACTGCATGCCCTAATGATTCATTTTCTTACTGTGCACAGTTCTTGGTGTAGCTTTTGCCACTCTCACCAGGAGA
TTTCATGTCTGATCTTGACGTTCAGATCCCAACTGCCTTTGGTATGCCTGTGGTTTTCCATCCAAATTATCATTGAAATT
GCTTGCACTGTTTGGAATGTCTTGCTTAATTGTTTTGCTGCTACATACAGACCCCTTTGCCGAGGCGAATGCTGGGGACG
CTGGTGCAGCTGCCGGATCAAAAGACTACGTTCATGTACGCATCCAGCAGCGTAATGGTCGCAAGAGCCTGACCACTGTC
CAGGGTCTGAAGAAGGAGTTCAGCTACAGCAAGATCCTCAAAGACCTCAAGAAAGAGTTTTGCTGCAATGGTACAGTTGT
CCAGGACACAGAACTTGGACAGGTGTGTTGAAACGACAAGCAAACTCGTTATCCCTTGTC----CCATTTGTTTCGCAAT
TTTCTCATGCAAGCTAGTTGTCTTGATCATTGCTGCTCTTTTCCACTCCAGGTCATTCAACTCCAGGGTGATCAGAGGAA
GAACGTCTCAAACTTCCTTGTCCAGGTAAACATCTTTCTCTTCATCTTATGCTCGGTACGGTTGCAGTTCACAAACATGG
ATCAAGATGTCTAATATGATATGTGTC-GACGCAGGCCGGCATTGTGAAGAAGGAACACATCAAGATTCATGGTTTCTGA
GCAACTGCCAGCTCCATATCAGAGTCTACATGCAAAGCAGCTATATATTGGTGGTGCGGTATATTTAGTTGTGTGCTAGC
GCTAGCAGGCGTCACCAGCTTGCGCGCTCCGAGTATACAGAAAATCTAGCATAGCCCACCTCTCTGCGTGTATGCTTGTT
ACCGTTGTGTTGAAACTTTGTAAGGAGCACCATCGTTAGATGGCTTGTTACCCTCTCCCATCAAGGTTGGATAATAATAT
ATGCTTTCTGAAGCGTGGTATCCTTCGTATCATCCATTTTGGTTTGACATTCGCCATCCCAGCCGGTGTCGATACATCTA
GTCTTGAACTGTATCTGCATCTGCTTGATGACTGAATTATGCTGCCTGCTTGACATGCACCA--TATTCTGGGCCCGGTT
GCACTTGGCTCTTCTGGGTCTACTGAATACTCACTGTAGCCTCATTCATGGCAATTTACGACCGCAGCTGAAACCAGTGC
CTGGTGCTGCT--------GCTACTCCAAGCTGCGAATGGCTTGGATCTCATTACTGTTTGAGGGTACAGTTTAGCTTTA
TTCTGCACACTGTGCAGCTCTCTAAAAACAGGGAAACGCTTCCTATCTTACGTCAGACAGCTCATTGACCGTTGATGCAC
TTTTGATCCCACGGAGGGCATCGACATTTTCGGATAGCTTGGATAGCTGGTCCGTCAAGGCATGTTTTGCACGGACTGCC
GGACCGAGATACTTTTGTGATCAGACATC---------------------------------------------------
------------------------------------------------------TAAAACTATAAACATCGGTCTCGTTT
TGGTTGTGATCGGCTGCTATAGGGTGATATGCATTTGAATTTCATATTGGTCTGACCTGGACGAACATTTAGTGGATGCG
ATTGGATGACCGACTCTCACATCACTGTCTGAACAGATACTGTGTTCGTTTTGGAAGTCAGCGTTGGAAGAAGGAAAAA-
CACTTCCCCT-AAAAATTGAGGAGTTAATATTTTTACCAACAACAAAATCACCTTTTTCTCATTGATATTGACAAAATCA
TTCTTTCTCGCTGACACCCCCAGCCCACCAAAAACCGAGGCTGAG-
>chr2B_1
TCCTCCTCGACCGCCTCCCAGGGTATGC--CCCTGCT--CTGATTCTTGGTTGATCTCTATGGTCTGTTGTTG-------
------TTATGTATTAGGGTCCCCTTCTATGGAGAGGATCTGTATGATAATGGATTCATCTTGACTTGCGATCCTGTTCG
TCTTCCATGGTTCTTTCTGAGGCCGTT--TAGGGTCGATCCGTGTAGGTATTCTTGGATCTCATTCTCTTTGGACCCGTA
TTGATAAGGTCGTCTGTTCTTATATGTACTGTACAATCGGGTATTGATTGCGATATCTATGATACACTTTTT---AAAGA
AGGTTAGGGATTCCAATCCTGATGCTATTTTTCTGTACAAACATAGTATGATTAGCTCTATACATCTATTTTCATTTCGA
AGAAAAAAAAACTTTTTGAGCGAAGGGGATAAATTTGTCAGGACAACAAAATTATGTTTGAGACCAGCACTGCACTTGCC
TGTACATATTAAGACATGC----TGTGATCTTGAAGTTGAAAGAAAACCTCTTTTTAGGAAATTCCAGTCCGGACTCCGG
ACTACCTAAGAAAATTTGAAGAAAACAACAATCATAAAGGATGATAAAAATCACATGTATAAACATTAAACAAACTGTAA
AGAATGGTAGAAGACATCAA-GCTCGCCGCACGAATCGTGCAGGTTGCTCCACTAGTTTTGTGAAATAGTTCCTCCATAA
TCATTTAGGTCCAATTGGAACAGTGATGATTGCTTGTGGTGTAAGTGTGTTGTCATCAGTTTGGCTTTGACTGTTGTTCC
TTGGTTTCGGTATAGAAATACCTCTCTGATATCTTGATTTTATCTTTCTTTAATTTAACTGTATGAAATAAGTACCTCTG
ATGCAAATTATTTAGTCAGTGGTCAAAGCCATGGCCTGCTTGGTTGTACAAATGAGAAATTTCGAAGCTGTCATTCACCT
CTCTATACTGCATGCCCTAATGATTCATTTTCTTACTGTGTACAGTTCTTGGTGCAGCTTTTGCCAGTCTCAGCAGGAGA
TTTCATGTCTGATCTTGACGTTCAGATCCCAACTGCCTTTGGTATGCCTGTTGTTTTCCATCCCAATTATCATTGAAATT
GCTTGCATTGTTTGGAGTGTCCTGCTTATTTATTTTGCTTCTACATACAGACCCCTTTGCCGAGGCGAATGCTGGGGACG
CTGGTGCAGCTGCCGGATCAAAAGACTACGTTCATGTACGCATCCAGCAGCGTAATGGTCGCAAGAGCCTGACCACTGTC
CAGGGTCTGAAGAAGGAGTTCAGCTACAGCAAGATCCTCAAAGACCTCAAGAAAGAGTTTTGCTGCAATGGTACAGTTGT
CCAGGACACAGAACTTGGACAGGTGTGTTGAAACAACAAGCAAACTCG---TCCTTTATCATGTCCATTTGTTTCGCAAT
TTTCTCATGCAAGCTAGTTGTCCTGATCATTGCTGCTCTTTTCCACTCCAGGTCATTCAACTCCAGGGTGATCAGAGGAA
GAACGTCTCAAACTTCCTTGTCCAGGTAAACATCTTTCTCTTCATCTTATGCTCGGTATGGTTGCAGTTCACAAACATGG
ATGAAGATGTCTAATATGATATGTGTCTGACGCAGGCCGGCATTGTGAAGAAGGAACACATCAAGATTCATGGTTTCTGA
GCAACTGCCAGCTCCATATCAGAGTCTACATGCAAAGCAGCTATATATTGGTGGTGCAGTATATTTAGTTGTGTGCTAGC
GCTAGCAGGCGTTACCAGCTTGCGCGCTCTGAGTATACAGAAAATCTAGCATAGCCCACCTCTCTGCGTGTATGCTTGTT
ACCGTTGTGTTGAAACTTTGTAAGGAGCACCATCTTTAGATGGCTTGTTACCCTCTCCCATCAAGGTTGAATAAT---AT
ATGCTTTGTTAAGCGTGGTATCCTTCGTATCATCCATTTTGGTTTGACATTCGCTGTTCCAGCCGGTGTCGATACATCTA
GTTTTGAACCGTATCTGC------TTGATGACTGAATTAAGTTGCCTGCTTGACATGCACCAATTCTTCTGGACCCAGTT
GCACTTGGTTCTTCTGGGTCTACTGAAT----ACTGTAGCCTCATTAATGGCAATTTACGACCGCAGCTGAAACCAGTGC
CTGGTGCAGTGGTGCTGCGGCTACTCCAAGCTGCGAATGGCTTGGATCTCATTACTGTTTGA-GGCACGGTTTAGCTTTA
TTCTG--CACTGTGCTGCTCTCTAAAAACAGGGAAGCGCTTCCTATCTTACGTCAGACCACTCATTGACCGTTGATGCAC
TTTTGATCC-ACGGAGGGCATCAACATTTT---------TGGATAGCTGGTCCAGCAAGGCATGTTTTGCAGGGACTGCC
GGACCGAGATATTTTTGTGATCAGACATCTACTCCCTCTGTTCGGAATTACTTGTCGCAAAAATGAATGTATCTAGACGT
AATTTAGTTCTAGATACATCCATTTTCGAGACAAGTAATTCCGAACGGAGGGAGTAAAACTATAAACATCGGTCTCGTTT
TGGTTGTGATCGGTTGCTACAGGGTGATATGCATTTGAATTTCATATTGGTCTGACCTCGACGACG-------GGATGTG
ATTGGATGACCGGCTCCCGTATCACTGTCCGGACAGATACCGTGTTCGTTTTGGAAGTCAACGTTGGAAGAAGGAAAAA-
CACTTCACCTAAAAAATTGAGGAGTTAATATTTTTACCAACGACAAAATCAC---TTTCTCATCGATACCGATAAAATCA
TTCTTCCTCGTTGACACCCCCAGCCCACCAAAAACTGAGGCTGAG-
>SNPs
----------------------------SS--------------------------------------------------
---S---------------S---------S--------------------------------------------------
--------------------S--------------------------------------------------------S--
----------S--------------S----------------------------------------------SSS-----
---------------S-S-------------------------------------------------------------S
---------------S----------------------------------------------------------------
------------------------------------------------S-------------------------S-----
---------------------------SS----------------S----------------------------------
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---------S----------------------------------------------S-----------------------
-------------------SS---S--------------S----------------------------------------
-----------------------------------S---------------------------------------S----
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------------------------------------------------------------------------S-------
-----------------------------------------------S--------------------------------
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-----S--------------------------------------------------------------------------
-------------------------------------S-----------S--------------S-----S---------
--------------------------------S------------S----------------------------------
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-------------------------------S------------------------------------------------
S-------------------------------------------------------------------------------
--S-----------------------------------S-----------------------------------------
---S----------------------------------------------------------------------------
------------SS-----S------------------------------------------------------------
------------S----------------S----------S-----------S---------------------------
------------------------------------------------------SSSSSSS-------------------
--------------------------------------------------------------------------------
---------------S--------S------------------S---------------S--------------------
----------------------S------------------------------------------S------------SS
SSSS----------------------------------------------------------------------------
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------------------------------------------------------------------S-----S-------
-----------------S---------S-------------------------------------S-------------S
-----S----------------------------------------------SS--------------------------
---------------------------------------------S
>forward_238
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----------------------------------------------------------TCTCGTTCTCTTTCGACCCC--
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>reverse_2300
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-----------------------------------------------------------CCTCATTGACCGTTGATGCAC
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