>input_sequence_73489
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---------------------------------------------------------------------ATGTCTGATCT
TGACGTTCAGATCCCAACTGCCTTTGGTATGCCTGTGGTTTTCCATCCAAATTATCATTGAAATTGCTTGCACTGTTTGG
AATGTCTTGCTTAATTGTTTTGCTGCTACATACAGACCCCTTTGCCGAGGCGAATGCTGGGGACGCTGGTGCAGCTGCCG
GATCAAAAGACTACGTTCATGTACGCATCCAGCAGCGTAATGGTCGCAAGAGCCTGACCACTGTCCAGGGTCTGAAGAAG
GAGTTCAGCTACAGCAAGATCCTCAAAGACCTCAAGAAAGAGTTTTGCTGCAATGGTACAGTTGTCCAGGACACAGAACT
TGGACAGGTGTGTTGAAACGACAAGCAAACTCGTTATCCCTTGTC----CCATTTGTTTCGCAATTTTCTCATGCAAGCT
AGTTGTCTTGATCATTGCTGCTCTTTTCCACTCCAGGTCATTCAACTCCAGGGTGATCAGAGGAAGAACGTCTCAAACTT
CCTTGTCCAGGTAAACATCTTTCTCTTCATCTTATGCTCGGTACGGTTGCAGTTCACAAACATGGATCAAGATGTCTAAT
ATGATATGTGTC-GACGCAGGCCGGCATTGTGAAGAAGGAACACATCAAGATTCATGGTTTCTGA---------------
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>chr2A_1_TraesCS2A01G219000
TCCCAGGGTATGC--CCCTTCTCCCTGATTCTTGGTTCATCTCTATGTTCTGTTGTTGATCTGCAGTTAG-TTCTGTATT
AGGATCCCCTTCTATGGAAAGAATCCGTATGATTATGGATTCATCTTGACTTGCGATCCTGTTAGTCTTCCGTGGTTATT
TCTTAGGTCGTTTATAGGGTCGTGCCGTGTAGGTATTCTTGGATCTCGTTCTCTTTCGACCCGTATTGATATGGTCGTGT
CTTATATA--------TACAATCGGGTATAGATTTTGATATCTACGGTGTTTTTTTT---GAAGAAGATTAGGGATTCCA
ATCCTGATGCTATTTTTCTGTACAAACATGGTATGATTAGCTTCATACGTGTATTTTCATTTCGAAGAAAAGT-AACTTT
TTGAGTGAAGGGGATAAATTTGTCAGGACAACAAAAGTATGTTA-AGACTAGCACTGCACTTGCTTGTACATATTAAGAT
ATGCTATTTGTGATCTTGAAGTTGAAAGAAAACATTCTTTAGGAAAAACTCC------ACTCCGGACTACCTAAGAAAAA
TTGAAGAAAACAACGAGCATAAAGGATGATAAAAATCACATGTA-------TAAACAAACTGTAAAGAATGGTAGAAGAC
ATCAAAGCTCGCCACACGAATCGTGCAGGTTGCTCCACTAGTTTTGTGAAATGGTTCTTCCATAATCATTTAGGTCCAAT
TAGAACAGTGATGATTGCTTGTGGTGTAAGTGTGTTGTCATCAGTTTGGCTTTGACTGTTGTTCCTTGGTTTTGGTATAG
AAATACCTCACTGATTTGTTGATTTTATCTTTCTTTAATTTAGCTGTATGAAATAAGCACCGCTGATGCAAATTATTTAG
TCAGTGGTCAAAGCCATGGCCGGCTTGGTTGTACAAATGAGAAATTACGAAGCTGTCATTCACCTCTCTAGACTGCATGC
CCTAATGATTCATTTTCTTACTGTGCACAGTTCTTGGTGTAGCTTTTGCCACTCTCACCAGGAGATTTCATGTCTGATCT
TGACGTTCAGATCCCAACTGCCTTTGGTATGCCTGTGGTTTTCCATCCAAATTATCATTGAAATTGCTTGCACTGTTTGG
AATGTCTTGCTTAATTGTTTTGCTGCTACATACAGACCCCTTTGCCGAGGCGAATGCTGGGGACGCTGGTGCAGCTGCCG
GATCAAAAGACTACGTTCATGTACGCATCCAGCAGCGTAATGGTCGCAAGAGCCTGACCACTGTCCAGGGTCTGAAGAAG
GAGTTCAGCTACAGCAAGATCCTCAAAGACCTCAAGAAAGAGTTTTGCTGCAATGGTACAGTTGTCCAGGACACAGAACT
TGGACAGGTGTGTTGAAACGACAAGCAAACTCGTTATCCCTTGTC----CCATTTGTTTCGCAATTTTCTCATGCAAGCT
AGTTGTCTTGATCATTGCTGCTCTTTTCCACTCCAGGTCATTCAACTCCAGGGTGATCAGAGGAAGAACGTCTCAAACTT
CCTTGTCCAGGTAAACATCTTTCTCTTCATCTTATGCTCGGTACGGTTGCAGTTCACAAACATGGATCAAGATGTCTAAT
ATGATATGTGTC-GACGCAGGCCGGCATTGTGAAGAAGGAACACATCAAGATTCATGGTTTCTGAGCAACTGCCAGCTCC
ATATCAGAGTCTACATGCAAAGCAGCTATATATTGGTGGTGCGGTATATTTAGTTGTGTGCTAGCGCTAGCAGGCGTCAC
CAGCTTGCGCGCTCCGAGTATACAGAAAATCTAGCATAGCCCACCTCTCTGCGTGTATGCTTGTTACCGTTGTGTTGAAA
CTTTGTAAGGAGCACCATCGTTAGATGGCTTGTTACCCTCTCCCATCAAGGTTGGATAATAATATATGCTTTCTGAAGCG
TGGTATCCTTCGTATCATCCATTTTGGTTTGACATTCGCCATCCCAGCCGGTGTCGATACATCTAGTCTTGAACTGTATC
TGCATCTGCTTGATGACTGAATTATGCTGCCTGCTTGACATGCACCA--TATTCTGGGCCCGGTTGCACTTGGCTCTTCT
GGGTCTACTGAATACTCACTGTAGCCTCATTCATGGCAATTTACGACCGCAGCTGAAACCAGTGCCTGGTGCTGCT----
----GCTACTCCAAGCTGCGAATGGCTTGGATCTCATTACTGTTTGAGGGTACAGTTTAGCTTTATTCTGCACACTGTGC
AGCTCTCTAAAAACAGGGAAACGCTTCCTATCTTACGTCAGACAGCTCATTGACCGTTGATGCACTTTTGATCCCACGGA
GGGCATCGACATTTTCGGATAGCTTGGATAGCTGGTCCGTCAAGGCATGTTTTGCACGGACTGCCGGACCGAGATACTTT
TGTGATCAGACATC------------------------------------------------------------------
---------------------------------------TAAAACTATAAACATCGGTCTCGTTTTGGTTGTGATCGGCT
GCTATAGGGTGATATGCATTTGAATTTCATATTGGTCTGACCTGGACGAACATTTAGTGGATGCGATTGGATGACCGACT
CTCACATCACTGTCTGAACAGATACTGTGTTCGTTTTGGAAGTCAGCGTTGGAAGAAGGAAAAA-CACTTCCCCT-AAAA
ATTGAGGAGTTAATATTTTTACCAACAACAAAATCACCTTTTTCTCATTGATATTGACAAAA
>chr2D_1
TCCCAGGGTATGCTCCCCTGCTC--TGATTCTTGGTTGATCTCTATGGTCTGTTGTTGATCTGCAGTTAAGTTATGTATT
AGGGCCCCCTTCTAGGGAGAGGATCTGTATGATTATGGAT-------------CGATCCTGTTCGTCTTCCGTGGTTCTT
TCTTAAGCCGTTT--AGGGTCGAGCCGTGTAGGTATTCTTGGATCTCGTTCTCTTTCGACCCCTATTGATAAGGTTGTCT
GTTCTTATATATACTGTACAATCGGGTATTGATTGTGATATCTACGATGCTTTTTTTTAAGAAGAAGATTAGGGATTCCA
CTG------------TTCTGTACAAACATAGTATGATTAGCTCCATACATGTATTTTCATTTCGTAGAAAAAAAACTTTC
-TGAGCGAAGGGGATAAATTTGTCAGGACAACAAAATTATGTTA-AGACTAGCACTGCACTTGCTTGTACATATTAAGAT
ATGCTATTTGTGATCTTGAAGTTGAAAGAAAACTTTTTTTAGGAAAAACTCC------AGTCCGGACTACCTAAGAAAAA
TTGAAGAAAACAGTGATCATAAAGGATGATCAAAATCACATGTA-------TAAACAAACTGTAAAGAATGGTAGAAGAC
ATCAAAGCTCGCCGCACGAATCGTGCAGGTTGCTCCACTAGTTTTGTGAAATAGTTCTTCCATAATCATTTAGGCCCAAT
TAGAACAGTGATGATTGCTTGTGGTGTAAGTGTGTTGTCATAAGTTTGGCTTTGACTGTTGTTCCTTGGTTTTGGTATAG
AAATTGCTCGCTGATTTGTTGATTCTATCTTTCTTTAATTTAGCTGTATGAAATAAGCACCTCTGATGCAAATTATTTAG
TCAGTGGTCAAAGCCATGGCATGCTTGGTTGTACAAATGAGAAATTACGAAGCTGTCATTGACCTCTCTATACTGCATGC
CCTAATGATTCATTTTCTTACTGTGTACAGTTCTTGGTGTAGCTTTTGCCACTCTCACCAGGAGATTTCATGTCTGATCT
TGACGTTCAGATCCCAACTGCCTTTGGTATGCCTGTGGTTTTCCATCCAAATTATCACTGAAATTGCTTGCACTGTTTGG
AATGTCTTGCTTAATTGTTTTGCTGCTACATAAAGACCCCTTTGCCGAGGCGAATGCTGGGGACGCTGGTGCAGCTGCCG
GATCAAAAGACTACGTTCATGTACGCATCCAGCAGCGTAATGGTCGCAAGAGCCTGACCACTGTCCAGGGCCTGAAGAAG
GAGTTCAGCTACAGCAAGATCCTCAAAGACCTCAAGAAAGAGTTTTGCTGCAATGGTACAGTTGTCCAGGACACAGAACT
TGGACAGGTGTGTTGAAACAACGAGCAAACTCGTCATCCCTTATCATGTTCATTTCTTTCGCAATTTTCTCATGCAAGCT
AGTTGTCTTGATCATTGTTGCTCTTTTCCATTCCAGGTCATTCAACTCCAGGGTGATCAGAGGAAGAACGTCTCAAACTT
CCTTGTCCAGGTAAACATCT--CTCTTCATCTTATGCTCGGTATGGTTGCAGTTCACAAACATGGATGAAGATGTCTAAT
ATGA--TGTGTC-GACACAGGCCGGCATTGTGAAGAAGGAACACATCAAGATTCATGGTTTCTGAACAACTGCCAGCTCC
ATATCAGAGTCTACATGCAAAGCAGCTATATATTGGTGGTGCAGTATATTTAGTTGTGTGCTAGCGCAAGCAGGCGTTAC
CAGCTTGCGCGCTCTGAGTATACGGAAAATCTAGCATAGCCCACCTCTCTGCGTGTATGCTTGTTACCCTTGTGTTGAAA
CTTTGTAAGGAGCACCATCGTTAGATGGCTTGTTACCCTCTCCCATCAAGGTTGAATAATAATATATGCTTTCTTAAATG
TGGTGTCCTTCGTATCATCCATTTTGGTTTGACATTCGCCATTCCAGCCGGTGTCGATACATCTAGTCTTGAACTGTGTC
TGC------TTGATCACTGAATTAAACTGCCTGCTTGGCATGCACCAATTATTCTGGGCCCGGTTGCACTTGGTTCTTCT
GGGTCTACTGAAT----ACTGTAGCCTCATTCATGGCAACAGTGCC----------------------------TGGTGC
TGCGGCTACTCCAAGCTGCGAATGGCTTGGATCTCATTACTGTTTGAGG-TACGGTTTAGCTTTATTCTGCACACTGTGC
GGCTCTCTACAAACAGGGAAACGCTTCCCATCTTACGTCAGACCCCTCATTGACCGTTGATGCACTTTTGATCC-ACGGA
GGGCATCTACATTTT---------TGGATAGCTGGTCCAGCAAGGCATGTCTTGCAGGGACTGTTTTGG----------T
TGTGATCAGACAT-------------------------------------------------------------------
---------------------------------------TAAAACTATAAACATCGGTCTCGTTTTGGTTGTGATCGGCT
GCTATAGGGTGATATGCATTTGAATTTCATATTGGTCTGACCTGGACGAACGTTTAGGGGATGCGATTGGATGACCGGCT
CCTGCATCACTGCCCGGACAGATACCGTGTTCGTTTTGGAAGTCAGCGTTTGAAGAAGGAAAAAACACTTACCCT-AAAA
ATTGAGGAGTTAATATTTTTACCAACGACAAAATCACTATTTTCTCATCGATACCGACAAAA
>chr2B_1
TCCCAGGGTATGC--CCCTGCTC--TGATTCTTGGTTGATCTCTATGGTCTGTTGTT-------------GTTATGTATT
AGGGTCCCCTTCTATGGAGAGGATCTGTATGATAATGGATTCATCTTGACTTGCGATCCTGTTCGTCTTCCATGGTTCTT
TCTGAGGCCGTTT--AGGGTCGATCCGTGTAGGTATTCTTGGATCTCATTCTCTTTGGACCCGTATTGATAAGGTCGTCT
GTTCTTATATGTACTGTACAATCGGGTATTGATTGCGATATCTATGATACACTTTTT---AAAGAAGGTTAGGGATTCCA
ATCCTGATGCTATTTTTCTGTACAAACATAGTATGATTAGCTCTATACATCTATTTTCATTTCGAAGAAAAAAAAACTTT
TTGAGCGAAGGGGATAAATTTGTCAGGACAACAAAATTATGTTTGAGACCAGCACTGCACTTGCCTGTACATATTAAGAC
ATGC----TGTGATCTTGAAGTTGAAAGAAAACCTCTTTTTAGGAAATTCCAGTCCGGACTCCGGACTACCTAAGAAAAT
TTGAAGAAAACAACAATCATAAAGGATGATAAAAATCACATGTATAAACATTAAACAAACTGTAAAGAATGGTAGAAGAC
ATCAA-GCTCGCCGCACGAATCGTGCAGGTTGCTCCACTAGTTTTGTGAAATAGTTCCTCCATAATCATTTAGGTCCAAT
TGGAACAGTGATGATTGCTTGTGGTGTAAGTGTGTTGTCATCAGTTTGGCTTTGACTGTTGTTCCTTGGTTTCGGTATAG
AAATACCTCTCTGATATCTTGATTTTATCTTTCTTTAATTTAACTGTATGAAATAAGTACCTCTGATGCAAATTATTTAG
TCAGTGGTCAAAGCCATGGCCTGCTTGGTTGTACAAATGAGAAATTTCGAAGCTGTCATTCACCTCTCTATACTGCATGC
CCTAATGATTCATTTTCTTACTGTGTACAGTTCTTGGTGCAGCTTTTGCCAGTCTCAGCAGGAGATTTCATGTCTGATCT
TGACGTTCAGATCCCAACTGCCTTTGGTATGCCTGTTGTTTTCCATCCCAATTATCATTGAAATTGCTTGCATTGTTTGG
AGTGTCCTGCTTATTTATTTTGCTTCTACATACAGACCCCTTTGCCGAGGCGAATGCTGGGGACGCTGGTGCAGCTGCCG
GATCAAAAGACTACGTTCATGTACGCATCCAGCAGCGTAATGGTCGCAAGAGCCTGACCACTGTCCAGGGTCTGAAGAAG
GAGTTCAGCTACAGCAAGATCCTCAAAGACCTCAAGAAAGAGTTTTGCTGCAATGGTACAGTTGTCCAGGACACAGAACT
TGGACAGGTGTGTTGAAACAACAAGCAAACTCG---TCCTTTATCATGTCCATTTGTTTCGCAATTTTCTCATGCAAGCT
AGTTGTCCTGATCATTGCTGCTCTTTTCCACTCCAGGTCATTCAACTCCAGGGTGATCAGAGGAAGAACGTCTCAAACTT
CCTTGTCCAGGTAAACATCTTTCTCTTCATCTTATGCTCGGTATGGTTGCAGTTCACAAACATGGATGAAGATGTCTAAT
ATGATATGTGTCTGACGCAGGCCGGCATTGTGAAGAAGGAACACATCAAGATTCATGGTTTCTGAGCAACTGCCAGCTCC
ATATCAGAGTCTACATGCAAAGCAGCTATATATTGGTGGTGCAGTATATTTAGTTGTGTGCTAGCGCTAGCAGGCGTTAC
CAGCTTGCGCGCTCTGAGTATACAGAAAATCTAGCATAGCCCACCTCTCTGCGTGTATGCTTGTTACCGTTGTGTTGAAA
CTTTGTAAGGAGCACCATCTTTAGATGGCTTGTTACCCTCTCCCATCAAGGTTGAATAAT---ATATGCTTTGTTAAGCG
TGGTATCCTTCGTATCATCCATTTTGGTTTGACATTCGCTGTTCCAGCCGGTGTCGATACATCTAGTTTTGAACCGTATC
TGC------TTGATGACTGAATTAAGTTGCCTGCTTGACATGCACCAATTCTTCTGGACCCAGTTGCACTTGGTTCTTCT
GGGTCTACTGAAT----ACTGTAGCCTCATTAATGGCAATTTACGACCGCAGCTGAAACCAGTGCCTGGTGCAGTGGTGC
TGCGGCTACTCCAAGCTGCGAATGGCTTGGATCTCATTACTGTTTGAGG-CACGGTTTAGCTTTATTCTGCAC--TGTGC
TGCTCTCTAAAAACAGGGAAGCGCTTCCTATCTTACGTCAGACCACTCATTGACCGTTGATGCACTTTTGATCC-ACGGA
GGGCATCAACATTTT---------TGGATAGCTGGTCCAGCAAGGCATGTTTTGCAGGGACTGCCGGACCGAGATATTTT
TGTGATCAGACATCTACTCCCTCTGTTCGGAATTACTTGTCGCAAAAATGAATGTATCTAGACGTAATTTAGTTCTAGAT
ACATCCATTTTCGAGACAAGTAATTCCGAACGGAGGGAGTAAAACTATAAACATCGGTCTCGTTTTGGTTGTGATCGGTT
GCTACAGGGTGATATGCATTTGAATTTCATATTGGTCTGACCTCGACGACG-------GGATGTGATTGGATGACCGGCT
CCCGTATCACTGTCCGGACAGATACCGTGTTCGTTTTGGAAGTCAACGTTGGAAGAAGGAAAAA-CACTTCACCTAAAAA
ATTGAGGAGTTAATATTTTTACCAACGACAAAATCAC---TTTCTCATCGATA---------
>SNPs
-------------------S---SS------------S---------S---------------------S---S------
---S--------------S--S---S-------------------------------------S-------------S--
-------S-----SS-------S------------------------------------------------S------S-
S--S-SSS---------------------S----S-----------S--S------------------------------
-----------------------------S------------S-----S----------------------SS-------
-----S------------------------------S-------------------------------------------
---------------------------------S--S-------------------------------------------
----------------S---------------------------------------------------------------
-------------S--------------------------------------S---------------------------
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---------S---------------------------------------------------S------------------
---------------------S------------------------------------------------S---------
-------------------------S------------------------------------------------------
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-------------------S--------------S-------S-------------------------------------
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-------------------------------------------S-----------------------S------------
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------------------------------------------S----------------------------------S--
--------------S-----------------------------------------------------------------
------------------------------------------------------S-------------------S-----
------------------------------------------S-------------------------------------
---SSSSSS---------------S------------------------------------------------S------
-------------SSSS-------------------------------------------------------S-SS----
-------------------------------------------------S---S--------------------------
S------------------------------------------SS-----------------------------S-----
-------S-------SSSSSSSSS--------------SS----------------S-------------------S---
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---------------------------------------------------S-----S-------------------S--
-S-S----------S-S--------S------------------------------------------------------
--------------------------S----------SS---------S----SS-------
>forward_654
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-------------------------------------------------------------------------AGAAGAC
ATCAAAGCTCGCCA------------------------------------------------------------------
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>reverse_2156
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---------------------------------------------------------------------------TGCTA
CTCCAAGCTGCGAAT-----------------------------------------------------------------
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