>input_sequence_73482
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------------------------------------------------------ATGGCTTCCACCCCCATCCTACTCCT
TCTCCTTGCGACGGCGGCCATGGCAGGCCTACGCCACGCCGGCGCGACGGAGTACACCGTCGGCGACTCCGACGGGTGGA
CCATCGGCCCCAACTACCTGCCCTGGTCGCAGAAGTACAACTTCACCACCGGCGACACGCTCGGTATGAACCATTTCCGT
TGGTCCTCAGCACAAGATATATCTTTCGGTGGTCTGGACGCTCGCTGCCACGCGATGGCCCGCCGGCCGGTGCAGCGTTC
AACTACGTGCCGCGGCAGCACGACGTGTACCGGGTGACGCGCGACGCGTTCCAGACGTGCGAGCCGACGGCGGGGCAGAC
GGTGCGCAAGTGGGCGTCGGGCCGCGACGTCGTCGACCTCGCCGCGACGGGGGACTACTACTTCATCTGCAACATCACCG
GCCACTGCCTCGGCGGCATGAAGTTCTCCGTCGCCGTGGGCGCGCCACCTCCTCCTCCGCCGTCACCGCCTCCCCCGTCG
GCCTTCCCGACTACAGTGCCGCCGCCTCCAAGCTCCGGCGCGTGCGGACGGCACCTGGCGTTGCCAGACTTGGCGAGGAT
TGCCGGCCTCGCTGCGATCGGGCTGTGGATCAGCTTGCTGTCATGA----------------------------------
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>chr5B_1_TraesCS5B01G332600
ACCAGCGTATGTTGAGCTGCAGATCCTGGGTTCGATACTTGGCTAGCGCGCATTTTTTTAGCCTTACAGGCTCGCGCTAC
AGTAAGGTCCGCTGACGGTCGCCAGTTTCCATGGGCCGGTCCAGTCAGAGTTCGGCCTGTGCGACAGAAGAATAAAGGCA
ACATTTTTTTGAGAAAAAAAAACAAATGGGCTGGCCCATCAGACAAATCCCGGCTGACTTTTTGCGAGGGTTTGATTTAG
ACCGGGATTACATAGTTCAGGGTGCAAACAACAGGGATTTTGACTTGAGGGTTTGATTCGCCGAACCTCTACAAGTTCAA
GGTTTAAAATGGACTTTTTCCCACAATAAAAACTGTTTGATTTTTTTTGAAAAA-TAGTGCATTGACACAACATATCATT
CTATGTTGTCACAAATTTTCATATCGAAATTTGAAAATTA--CACGAGATGCAAAAATAA--AAATTTGGCATTCGCATT
GATGTCAAAATTAAGCTTAATTGTGCCGTCAGCCAGT---AGTGAGCGACAACGACCATGGCAACTTGCAACAACCCCGG
GAAACATAGACAGAGGCGCGTGATGATTTTTTTTTTGGAAATGGAGGTATACCCCCGACCTCTGCATCATGATGATGCAT
GCGGCTCTTTTATTAAATATCCAAAAAGTAGCAACAAAAAGGTCTTACAGCTCGCAAACGGAGCAGAAACAAAACACAAA
GGACTGGAAAATAGAAGTGGACAAATACAACCGGTACGTTGATAATAAGGACAAGCTCTCTAGACTCCTATCATGTTATG
CGTATGCCATCCGAACCGGTTGAATATAACCCGAGCCACCGTCTTTTATTGGTTGCACCCAGTAACCAAAGGCTCTCTGA
AATCCGTAGGAATGAGTAAGGACCACGTAGAACACCACCTAACTTGTG------CATCTTCTACTGAAAAAGTCCAAAGT
CGTCGTCCCCTCGTACGCACACACACCCTCCTCAGCTAGGCTCCCTTACCAATCATGGCTTCCACCCCCATCCTACTCCT
TCTCCTTGCGACGGCGGCCATGGCAGGCCTACGCCACGCCGGCGCGACGGAGTACACCGTCGGCGACTCCGACGGGTGGA
CCATCGGCCCCAACTACCTGCCCTGGTCGCAGAAGTACAACTTCACCACCGGCGACACGCTCGGTATGAACCATTTCCGT
TGGTCCTCAGCACAAGATATATCTTTCGGTGGTCTGGACGCTCGCTGCCACGCGATGGCCCGCCGGCCGGTGCAGCGTTC
AACTACGTGCCGCGGCAGCACGACGTGTACCGGGTGACGCGCGACGCGTTCCAGACGTGCGAGCCGACGGCGGGGCAGAC
GGTGCGCAAGTGGGCGTCGGGCCGCGACGTCGTCGACCTCGCCGCGACGGGGGACTACTACTTCATCTGCAACATCACCG
GCCACTGCCTCGGCGGCATGAAGTTCTCCGTCGCCGTGGGCGCGCCACCTCCTCCTCCGCCGTCACCGCCTCCCCCGTCG
GCCTTCCCGACTACAGTGCCGCCGCCTCCAAGCTCCGGCGCGTGCGGACGGCACCTGGCGTTGCCAGACTTGGCGAGGAT
TGCCGGCCTCGCTGCGATCGGGCTGTGGATCAGCTTGCTGTCATGACGGTGATCGATGAATCAGAACGTTGACTTTACTT
GTGATCGTCTATGCTTTTCTGAGTTTATTA---CTGGGTCGCCTCTGAGCTGGTATTGGGATTATTGCATACGGTGAATT
TTGCATCTGATGTGTCTGCAGAGTTCATGATAATGTCGTAATTTTGGCAGTTGGTAGTGGCACACCAGAAGCAGAGTT-A
AACAGAAACTAAGAATATAGCAAGGGCAAGCCGATTGTTGCAGCTAGCATCCAGGCATACTGAACAACTATTTCCAAAAA
AATTAACCCCACTATATCTATCATTATCTCAACCCACGGTGTTCACTTTGTCGACC------------------------
-----------------------------AAGGAAAGGGCATTGTATGTTCATCATCAGGGCATGAGCTGCTAACTAACA
AATCAA-GATCTAAGCTAAGCCATCACTAATTCGACAATCCAACGACGGCCATCCCCACCTCCATAGCGCAGCTCGATTC
CACGAGGTAGCCTTTGGACCTGTCCATGATCATGCTGAGTGGGCAAAATTTGGAAAGCCCCCATCGGTGTGAATATGGCT
ATGCCTAACCGATTGCGCGCACAACTCAAATCTGCTCCACACATCGACATGCACATCCCATCAGC---------------
-----CTGCATGTCCACTCTCTCTCTTCTCTATTCTCTCTTTCAAACAAATCCAACCCTTTTATTTCACCTTTTCTAATT
TAAATCATTTATATCTTTTAAACCAATATTTCAATTTCAAAAAAAAATGTTCCTATATAATCATGAGGCAAAGTCCTTTA
GAATAAGACTAATATTAAATATTTTTTAACTACTTTGAATTTTTAAATGAATGAAATATGTTATTGAAACGAGTGAAATG
AATGAAATTTGTCATTGAAACAAGTGAAATGAATGAAATTTGTCATTGAAACGAGTGAAATTAGTTATTGAAATTAGTGA
ATTAGTGAATCCGTTTTTTGAAATGAGTGAAATCTGTTATTGAAAACGAGTGAAATGACTAAAATGAGATGGAATCAATT
TTTG----------------------------------------------------------------------------
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>chr5A_342
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---------------------CACATTAAAAAATGTTCGAAAAGTTTTGAAAAAATAATGCATTGACACA-----TCATT
TGATGTTGTCACAAATTTTGATATCAAAATTTGAAAAAAATGCACGAGAGACAAAAAATGATAAATTTGACATCGGCTTT
GATGTCAAAATTAAGCTTAATTGTGACAGACACGTTAGCCAGTGAGCGACAACGACCATGGCAACTTGCAACAACCCCGG
GAAACATAGACAGAGGCGCGTGATGAAATGAA------------------------------------------------
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----------------------------AGAACACCACCTAACTTGTGCAAAAACATCTTCTACTGAAAAAGTCCAAAGT
CGTCGTCCCCTCATACGCACACACG-CCCTCTTAGCTAGTCTCTCCCACCAATCATGGCCTCCACCGGCATCCTACTGCT
TCTCCTTGCGACGGCGGCCATAGCAGGTCCACGCCACGCCGGCGCGACGGAGTACACCGTCGGCGACTCCGACGGGTGGA
CTATCGGCCCCAACTACCTGGCCTGGTCGCAGAAGTACAACTTCACCACCGGCGACACGCTCGGTATGAACCATTTCCGT
TAGTCCCCAGCACAAGATATATCTTTCAGTGGTCTTGACGCTCGCTGCCGCTCGATGGCTCGCTGGCCGGTGCAGCGTTC
AACTACGTGCCGCGGCAGCACGACGTGTACCGGGTGACGCGGGACGCGTTCCAGACGTGCGAGCCGACGGCGGGGCAGAC
GGTGCGCAAGTGGGCGTCGGGCCGAGACGTCGTCGACCTCGCCGCGACGGGGGACTACTACTTCATTTGCAACATCACCG
GCCACTGCCTCGGCGGCATGAAGTTCTCCGTCGCCGTGGGCGCGCCGCCTCCTCCTCCGCCGTCACCGCCTCCCCCGCCG
GCCTTCACGACTGCCATGCCGCCACCTCCAAGCTCCAGCGCGTGCGGATGCCGCCTGGCGTTGCCGGACTTGGCGAGGAT
TTCCTGCCTCGCTGCGATCGGGATGTGGATCAGCTTGCTGTCATGACGGTGAT----GAATCAGAACGTTGACTTTACTT
GTGATCGTCTATTCTTTTCTGAGT---TTA---CTGGGTCGCCTCTAAGCTGGAATTGGGATTATTGCACA---TGAATT
TTGCATCTGATGTGTATGTAGAGTTCATTATAATCTCATAATTTTGGCAGTTGTTAGTGGCACACCAGAAGCAGAGTTAA
AACAGAAACTAAGAATCTAGCAAGGGCAAGCCGACTGTTGCAGCTAGCATCCAGGCATACCGAACAACTATTTCC--AAA
AATTACCCCCACAATATCTATCATTATCTCAACCCACGGTGTTCACTTTGTCGACCATCGTTACTACCGTACGATCGTCA
CGAGTTCTTAGATACTAGCCATTAGGATCAAGGAAAGGGCATTGTATGTTCATCATCAGGGCATGAGCTACTAACTAACA
AATCAAAGATCTAAGCT-AGCCATCACTAATTCGACAATCCAACGACGGCCATCCCCACTTCGATAGCGCAGCTCGATTC
CACGAGGTAGCCTCTGGACCTGTCCATGATCATGCTGAGCGGGCAGAATTTGGAGAAACCCCATCGATGT----------
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>chr5D_370
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-------------------------------------------------AAAAGATAGTGCATTGACACAACT--TCATT
CGATGTTGTCACAAATTTTTATATCAAAAGTTAAAAAATGGCATGAGATAC--AAAAATGACAAATTTGACATTCGGATT
GATGTCAAAATTAAGCTTAATTGTGCCAGACACGTCAGCCAGTGAGCGACAACGACCATGGCAACCTGCAACAACCCCGG
GAAACATAGACAGAGGCGCGTGATGACATGAA------------------------------------------------
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----------------------------AGAACACCACCTAACTTGTGCGAAAACATCTTCTACTGAAAAAGTCCAAAGT
CGTCGTCCCCTCATACGCACACACACCCCCCTTAGCTAGGCTCCCCTACCAATCATGGCGTCCACCGGCATCCTAATGCT
TCTCCTTGCGACGGCGGCCATGGCAGGCCCACGCCACGCCGGCGCGACGGAGTACACCGTCGGCGACTCCGACGGGTGGA
CCATCGGCCCCAACTACCTGGCCTGGTCGCAGAAGTACAACTTCACCACCGGCGACACGCTCGGTATGAACCATTTCCGT
TGGTCCTCAGCACAAGATATATCTTTCGGTGGTCTTGACGCTCGCTGCCGCGCGATGGCCCGCCGGCCGGTGCAGCGTTC
AACTACGTGCCGCGGCAGCACGACGTGTACCGGGTGACGCGGGACGCGTTCCAGACGTGCGAGCCGACGGCGGGGCAGAC
GGTGCGCAAGTGGGCGTCAGGCCGCGACGTCGTCGACCTCGCCGCGACGGGGGACTACTACTTCATCTGCAACATCACCG
GCCACTGCCTCGGCGGCATGAAGTTCTCCGTCGCCGTGGGCGCGCCGCCTCCTCCTCCGCCGTCACCCCCTCCCCCGCCG
GCCTTCCCGACTGCCATGCCGCCACCTCCAAGCTTCAGCGCGTGCGGATACCGCCTGGCGTTGCCGGACTTGGCGAGGAC
TGCCGGCCTCGCTGCGATCGGGCTGTGGATCAGCTTGCTGTCATGACGGTGAT----GAATCAGAACGTTCACTTTACTT
GTGATCGTCTACTCTTTTCTGAGT---TTATTACTGGGTCGCCTCTGAGCTGGAATTTGGATTATTGCATA---TGAATT
TTGCATCTGATGTGTCTGTAGAGTTCATGATAATCTCGTAATTTTGGCAG----------------AGAAGCAGAGTT-A
AACAGAAACTAAGAATCTAGCAAGGGCAAGCCGACTGTTGCAGCCAGCATCCAGGCATACTGAACAACTATTTCC-AAAA
AATTACCCCCACTATATCTATCATTATCTCAACCCATGGTGTTCACTTTGTCGATCATCGTTAC---CGTACGATCATCA
CCAGTTCTTAGATACC----------------------------------------------------------------
------------------AGCCATCACTAATTCGACAATCCAACGAGGGCCATCCCCACCTCGATAGCGCAGCTCGATTC
CACGAGGTAGCCTTTGGACATGTCCATGATCATGCTGAGCGGGCAAAATTTGGAAAAACCCCATCGATGT----------
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>chr5B_2159
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----------------------------------------------------------------------GAATATGGCT
ATGCCTAACCGATTGCGCGCACAATTCAAATCTGCTCCACACATCGCCATGCACATCCCATCAGC---------------
-----CTGCATGTCCACTCTCTGTCTTCTCTATTCTCTCTCCCAAACAAATTCAACCCTTTTATTTCACCTTTTCTAATT
TAAATCATTTATATCTTTTAAACCAATATTCCAATTTCAAAACAAATTGTTCCTATATAATCATGAGGCAAAGTCCTTTA
GAATAAGACTAATATTGAATATTTTTTAACTACTTTGAATTTTTAAATGAGTGAAATATGTTATTGAAACGAGTGAAATG
AATGAAATTTGTCATTGAAACAAGTGAAATGAATGAAATTTGTCATTGAAACGAGTGAAATTAGTTATTGAAATTAGTGA
AT--------CCATTTTTTGAAATGAGTGAAATCTGTTATTGAAAACGAGTGAAATGACTAAAATGAGATGGAATCAATT
TTTGAAATGACTGAAATCTATTATTGAAA---------CGAGTGAAATG-------------------------------
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>chr6B_2159
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----------------------------------------------------------------------GAATATGGCT
TTGCCTAATCGATTGCGGGCACAACTCAAATCTGCTCCACACATCGCCATGCA-------TCAGGCAGTACACATGATGT
CACATCTGCATGTCCACTCTCTCTCTTCTCTATTCTCTCTCCCAAACAAATCCAACCCTTTTATTTCACCATTGCTAAAT
TAAATCATTTATATCTTTTAAACCAATATTCCAATTTCAAAACAAATTATTTCTGTATAATCATGACGCAAAGACCTTTA
GAATAAGACTAATATTGAATATATTTCAACTACTTTGAATTTTTAAATGAGTGAAATCTGTTATTGAAACGAGTGAAATG
AATGAAATTTGTCATTGAAACGAGTGAAATGAATGAAATTTGTTATTGAA----GTGAAATTAGTG-----AATTAGTGA
AT--------CCGTTTTTTGAAATTAGTGAAATCTGTTATTGGAAAAGAGTGAAATGAGTAAAATGAGATGAACTCAATT
TTTGAAATGACTGAAATCTATTATTGAAA---------TGAGTGAAATG-------------------------------
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>chr1D_2159
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----------------------------------------------------------------------GAATATGGCT
ATGCCTAACCGATTGCGCGCACAACTCAAATCTGGTCCACACATCGCCATGCACATCACATCAGGCAGC--------TGT
CACATCTGCATGTCCACTGTCTCTCTTCTTTATTCTCTCTCCCAAACAAATCCATCCCTTTTATTCCACCTTTTCTAACT
TAAATCATTTATATCTTTTAAACCAATATTCTGATTTCAAAACAAATTATTTCTTTATAATCATGACGCAAAGACCTTTA
GAATAAGACTAATATTGAATATATTTCAACTACTTTGAATTTTTAAATGAGTGAAATCTGTTATTGAAACGAGTGAAATA
AATGAAATTTGT-------------------------------TATTGAAATGAGTGAAATCAGTTATTGAAATTAGTGA
ATTAGTGAATCAGTTTTTGT---------------------------------AATGAGTAAAATGAGATGAAATCAATT
TTTGAAATGACTGAAATCTATTATTGAAATAAGCGAATTGAGTGAAATGTATTAAAAATGCTATTGAAACAAGTGAAATG
AGTGAAAAATGTTATCAAAACAAGTGAAAATGAGTGAAATCTGTTTTTTGAAAAGAGTGAAATATGTTATTGAAACGAGT
GAAATATGTTATTGAAATTTGT
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSS----S------S----S--SSSS----------------------------SSS-----
-S-----------------S-----S-----------S-----------SS------SSS---------S----------
---------------------------SSSSS-SSSS-------------------------------------------
--------------------------SS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSS----------------------------------------------------
------------S---------------S---S------------S-------------S------SS---------S--
-----------------------------S--------------------------------------------------
--------------------S-----------------------------------------------------------
-----------------------------------S-------------S------------------------------
-----------------------------------------S--------------------------------------
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----------------------------------------------S------------------------------S--
------------S-SS-------S------------S-----------S-S-S------------S--------------
-----------------------------------------------------SSSS-----------------------
------------S-----------SSS--------------------------S-----------------SSS------
------------------S---------------S------------------S--------------------------
----------------S-----------------S----------------------------------------S----
-----S--------------------------------------------------------------------------
---------------------------------------------------------------------S----------
-----------------S--------------------------------------------S-----------------
---------------------------------------S----------------SS--------S-------------
----------------------------------------------S---------------------------------
----------------------------------------SS--------------------------------------
------------------------------S-----------S---S---------------------------------
----------------S---------------------------------S-----------------------------
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>forward_712
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----------------------------------------------------CGCAAACGGAGCAGAAACAA--------
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>reverse_1857
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----------------ATAGCAAGGGCAAGCCGATT--------------------------------------------
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