>input_sequence_73474
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------------------------------------------GCCGCACGCCGCTC----------CCGATGTCGCCGAA
GAAGACGCCGAAGGGCAAGTCGGGTTTCTTCGGCGTGAGGCAGAAGCCCTCC-GGCAACTGGGGTGTGGAGTTCCCCGAC
GCCGGAAGGCGTTGGTGGATCGGCACGTACCCCTCCGCCCACGAGGTCGCGCGTGCCTACGACGTGGCGGT---GTGGCG
TGCCGAGAGGCCTCGGTCACACCTCAAATTTCCAGAGACCGAGAGTCGGGCGGAAGCGGAGATACTTGTGCCGCAGGGCA
TCAACATGAAGGAGATCACGA---CGAAGAAGAAAAAGA---CGAAGAAGCCGTCGGTTGTCGTCAGTGCTG--------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------GCGAAACCGATGAGGAGGCGATGGCGAGGTTTGCTCGGGAGCATCCGGAGTA
CGTCC---------------------AGGCCGAGATAGAGTACTACTGGAAGCGTGAGGCGGAACAAAAGAAGAAGGGGT
CGAAGAAGGAGGATGAGGCCGGTCCCTCGACGGTGATCCCCATCGAGTCCTCTTCCGAGGAGGACTGGGCAGACTTCTC-
-----GGAGGA------GGATGAG---GGGTGCGACGACCCGACGAAGGAGGAGTTCTGGGAGCAGTTCCGTAGCTCCG-
--ATGAGGAGTAGTTTATCTAGTAGTTTGAATAAGTAGTAGTTGAAGTT-------------------------------
--------------------------------------------------------------------------------
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-------------------
>chr3A_1_TraesCS3A01G223500
TGGTGTTGGCTGCAAACTATTCGTTTCTGTGGCCTTTAACCTAACCTGGCGAGGGAGGAGCCTTTGGGCGGTGCCAGGGA
ATGAAACAGATTTATTCATGGTTAAAAGGTCACAGCAGCGTGGCGATCAAGAGTTCAGGAGTTTAGAGTAACTCTATCAA
TCAAACACTTTAAGAGCATCTCCAATAGATGGTCCAAATGTAAAAATAATTAACCTTTGGACCATCTGGGACAAAAAACA
CTGCTCCAATAGACG-TCCATATGCAAAAAGAAATGGACCGCGGTCTCTTCATGATGTAAAATGCAACACCTCGCGATGC
AAATATACATCACGAGAAGCATCTGGTCCAAAACCAGCCGCCGCCCGTGAACACCCAACCGTCACTTCATTTCCGTTCCC
GCCCGC----GACCTCCTGCTCGTCTGCCGCCGCCCCGCCGCCTCCACACCCCGCCGCCGCACGCCGCCCGCATCAGATC
CGGT----------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-GCCGCCCCGTCCCTCACCGCTGTTTCCACGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNGGCTCCGTCCGCCACCGCCCCGGCCGCACGCCGCTC----------CCGATGTCGCCGAA
GAAGACGCCGAAGGGCAAGTCGGGTTTCTTCGGCGTGAGGCAGAAGCCCTCC-GGCAACTGGGGTGTGGAGTTCCCCGAC
GCCGGAAGGCGTTGGTGGATCGGCACGTACCCCTCCGCCCACGAGGTCGCGCGTGCCTACGACGTGGCGGT---GTGGCG
TGCCGAGAGGCCTCGGTCACACCTCAAATTTCCAGAGACCGAGAGTCGGGCGGAAGCGGAGATACTTGTGCCGCAGGGCA
TCAACATGAAGGAGATCACGA---CGAAGAAGAAAAAGA---CGAAGAAGCCGTCGGTTGTCGTCAGTGCTG--------
--------------------------------------------------------------------------------
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----------------------------GCGAAACCGATGAGGAGGCGATGGCGAGGTTTGCTCGGGAGCATCCGGAGTA
CGTCC---------------------AGGCCGAGATAGAGTACTACTGGAAGCGTGAGGCGGAACAAAAGAAGAAGGGGT
CGAAGAAGGAGGATGAGGCCGGTCCCTCGACGGTGATCCCCATCGAGTCCTCTTCCGAGGAGGACTGGGCAGACTTCTC-
-----GGAGGA------GGATGAG---GGGTGCGACGACCCGACGAAGGAGGAGTTCTGGGAGCAGTTCCGTAGCTCCG-
--ATGAGGAGTAGTTTATCTAGTAGTTTGAATAAGTAGTAGTTGAAGTTGATGTATGAAACGATATTGAATTTGATGTTT
GAACTATGTTGAATGGACTAGTAGTATGTC-G-T--------TTTACATCTTCATTTTGGACCATCTATTGGAGTTGCTC
TTTTGGACTATTAATTTGGACCATCTGTTGGAGTTGAGCTTTTTTCGGAGCTCCAAAACGCACTTTTTGACGGTCCAAAT
TTTACATCTTCGGTTTTGGACCGCCAAATTTTGGACCATCTATTGGAGATGCTCTAAAACCAATAGCCTCTGTATGGTTT
TAAAGGGTTCTCTATTAGTTGTCCTTGATTTAATATAGATTTGTACTAAATCAGCGACAATTAATATGGATCGAAGGGAG
TATTAAATTTTTTGAATACTTCCAGATTAGAAACTATAGGTCATTTTCCTTTTCTTATTTCTACTCTATCTGTCCATCTT
GGGAGGCGGTGTGGCAGGATGCCACGGGAGAAGGAGGAGGAGGCCACGGCGGATGGTCCGCTCAAGGCGGCGGCCTCCTT
AGCAAGTCGGAAATGTCGAAGGGAGGCCCACGTCGAGTACCGTGTCAAGGATGCGGGCGGGAAGGCAACATTAATGGAAT
GGTTGTGTATGTCAGCAACAACATGGCGAAAACAACGAGAGTTGAACGTGAAATTTCCTACTCCCTCCGTCCGGGTTTAT
TAGACCTCTCAGTATCACAAACATGTCCCTTTTTATAAGGTCTCGTTTTGGAAAGATGCATGCATGCAATCATTTCATTG
GTTGCATTGAAAGCCGTTGTTGTTGGTGCCATGACTGGAAAATTAATACACTTCAAGCGTGCTTTTTCATTGGCTGCATG
CATGTGAGAGAGTGCATTGAAGTGGAATGAAAGAATTAGTGTGAGCAAATTACTATATGTCTTGCTCGAAGAGAAGTTGT
CTTTAGGCCTAATAAACCCGGACAGAGGGAGTAAAATTTTACTTCATATAAGTTCAAGCAAGAGGGCAACTGGCCTGCCA
ATACCGGCACCAAAAGATC
>chr3D_1
TGGTGTTGGCTGCAAACTATACTATTC-----------------------------------------------------
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-----------------------GTTTCTGCGGCCTTTAGCCTAACCT--------------------------------
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----------------------------------GGCGA---GGGAGGAGCCTTTGGTTGGGCGGTGCCAGGGAATGAAA
CAGCATATTCATGGTTAAAACGTCACAGCAGCGTGGGGATCAAGAGTTCAGGAGTTTAGAGTAACTCTATCAATCAAACA
CTCTAAAATCAATAGCCTCTGTATGGTTTTAAAGGGGTCTCTATTAATTGTCCCTGATTTAATATAACTTTATACTAAAT
CAGCGACAATTAATATGGATCGAACGAGTATTAAAAATTTCGGATACTTCCAGATTACTACCTCTTTCTCAGTTTACAGG
GCGTGCGTGTACCCCTAGGTCGTCAATTTGACCAACCTAATACAAGTCATATATTACAAAAAATATACCAATATAAACTT
CAGATGTTCTATTTTCAAACGATATAACTTTTGTGTTATATAGTTTATATTAGGGTGATAAAATTGGCAACCTAAGTATA
CGCGTAGGACTTGTAAACTGAAACGGAGGTAGTAGAAACTATAGGTCATTTTCTTTTTCTTTTTCTTTCCTGTCCATCTT
GGTGGGAGGCGGTGCGGCAGGATGCCACGGGAGCGGGAGGAGGAGGCCACGACGGATGGTCCGCTCAAGGCGGCGACCTC
CTCAGCAAGTCGGAAATATCGGAGGGAGGCCCACATTGAGTACTGCGGCAAGGATGAGGGCGG-----------------
--------------------------------------------------------------------------------
--------------------------------------------GAAGGCGGCATTAATGGAATGGTTGTGTATGTCAGC
AG------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------CAACACGGCGAAAACAACGAGAGTTGAACGTGAAAGTTCC----------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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-------------------
>chr3D_171
--------------------------------------------------------------------------------
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----------TAAGAGCATCTCCAATAGATGGTCCAAATGTAAAAATAACTAACTTTTGGACCGTCTGGGGCAAAAAACG
CTGTTCCAACAGACGGTCCATATGCAAAAAAATTTGGACCGCGGCCTCCTCGTGATGTAAAATGCAACACCTCGCGATGC
AAATATACATCACGAGATGCATCTGGTCCAAAACCAGCCGCCGCCCGCGAACGCCCAACCGCCACTTCATTTCCGTTCCC
GCCCGCCCGCGACCTCCCGCCCGTCCGCCGCCGCCCCGCCGCCTCCACACC---CCGCCGCACGCCGCCTGNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCGCCAC
CGCCGCCCCGCAGCACCGCCCCGCCC------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------GGCTCCGTCCGCCACCGCCCCGGCCGCATG-CGCTC----------TAGATGGCGCCGAA
GAAGACGCCGAAGGGCAAGTCAGGCTTCTTCGGCGTGAGGTAGAAGCCCTCC-GGCAACTGGGGTGTGGAGTTCTCTGGC
GCCGGAAGGCGTTGGTGGATCGGCACGTACCCCTCCGCCCACGAGGCCGCGTGTGCCTACGACGTGGCGGT---GTGGCG
TGCCGAGAGGCCTCGGTCGCACCTCAACTTTCCAGAGATCGAGAGTCGGGCGGTAGCGGAGATGCTTGTGCCGCAGGGCA
TCAACATGAAGGAGATCACGA---CGAAGAAGAAGAAGAAGATGAAGAAGCCGTCGGTTGTCGTTAGTGCTG--------
--------------------------------------------------------------------------------
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----------------------------GCGAGACCGATGAGGAGGCGATGGCGAGGTTTGCTCGGGAGCATCCGGAGTA
CGTCC---------------------AGGCCGAGCTGGAGTACTACTGGAAGCGTGAGGCGGAGCAGAAGAAGAAGGGGC
CGAAGAAGGAGGATGAGGCCGGTCCCTCGACGGTGATCCCCATCGAGTCCTCTTCCGAGGAGGACTGGGCAGACTTCGAG
GAGGAGGAGGA------GGAGGAG---GGGTGCGACGACCCAACGAAGGAGGAGTTCTGGGAGCAGTTCCGTAGCTCCG-
--ATGAGGAGTAGTTTATCTAGCAGTTTGAATAAGTAGTAGTTGAAGTTGATGTATGAAACTATGTTGAATTTGATGTTT
GAACTATGTTGAATGGACTAGTAGTATGTC-GTT--------TTTACATCTTCATTTTGGACCATCTATTGGAGTTGCTC
TTTTGGACCATCAATTTGGACCATCTGTTGGAGATGAGCTTTTTTCGGAGCTCCAAAACGCACTTTTTGGCGGTCCAAAT
TTTACATCTCCGGTTTTGGACCGCCAAATTTTGGACCATCTATTGGAGATGCTCTAA-----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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-------------------
>chr5D_979
--------------------------------------------------------------------------------
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--------------------GGCTCCGTCCGCCACCGCCTCGGCCGCACGCCACTC----------CCGATGGCGCCGAA
GAAGACACC-AAAGGCAAGTCGGGTTTCTTCGGCGTGAGGCAGAAGCCCTCC-G-CAACTGGGGTGTGGAGTTCTCCGAC
GCCAAAAGGCGTTGGTGGATCGGCACGTACCCCTCCGCCCACAAGGCCGCGCGTGCCTACGATGTGGCGGTGTGGCA---
TGCCGAGAGGCCTTGGTCGCACCTCAACTTTCCAGAGATCGAGAGTCGGGCGGTAGCGGAGATGCTTGTGCCGCAGGGCA
TCAACATGAAGGAGATCACGA---CGAAGAAGAAGAAGATAATGAAGAAGCCCTCGGTTGTCGTCAGTGCTG--------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------GCGAGACCGATGAGGAGGCGATGGCGAGGTTAGCTCGGGAGCATCCGGAGTA
CGTCC---------------------AGGCCGAGCTGGAGTACTACTGGAAGTGTGAGGCGGAGCAAAAGAAGAAGGGGC
CGAAGAAGGAGGATGAGGCCGGTCCCTCGACGGTGATCCCCATCGAGTCCTCTTCCGAGGAGGACTAGGCAGACTTCTC-
-----GGAGGA------GGAGGAGGAGGGGTGCGAAGACCTTACGAAGGAGGAGTTCTGGGAGCAGTTCCGTAGCTCCG-
--ATGAGGAGTAGTTTATCTAGCAGTTTGAATAAGTAGTAGTTGAAGTTGATGTATGAAACTATGTTGAATTTGATGTTT
GAACTATGTTGAATGGGCTAGTAGTATGTC-GTT--------TTTACATCTTCATTTTGGACCATCTATTGGAGTTGCTC
TTTTGGACCATCAATTTGGACCATCTGTTGGAGATGAGCTTTTTTCGGAGCTCCAAAACGCACCTTTTGGCGGTCCAAAT
TTTACATCTCCGGTTTTGGACCGCCAAATTTTGGACCATCTATTGGAGATGCTCTAAAA---------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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-------------------
>chr5D_979
--------------------------------------------------------------------------------
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--------------------GGCTCCGTCCGCCAACGCCCCGGCCGCACACCGCTC----------CCGATGGCGCCGAA
GAAGACGCTGAAGGGCAAGTCGGGCTTCTTCGGCGTGAGGCAGAAGCCCTCC-G-CAACTGGGGTGTGGAGTTCTCCGAC
GCCGAAAGGCGTTGGTGGATCGGCACGTACCCCTCTGCCCAAGAGGCCGCGCGTGCCTACGACGTGGCGGT---GTGGCG
TGCCGAGAGGCCTCGGTCACACCTCAACTTTCCAGAGATC--GAGTCGGGCGGTAGCGGAGATGCTTGTGCCGCAGGGCA
TCAACATGAAGGAGATCACGA---CGAAGAAGAAGA---TAATGAAGAAGCCGTTGGTTGTCGTCAGTGCTG--------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------GCGAGACCGATGAGGAGGCGATGGCGAGGTTTGCTCGGGAGCATCCGGAGTA
CGTCC---------------------AGGCCGAGCTGGAGTACTACTGGAAGCGTGAGGCAGAGCAGAAGAAGAAGGGGC
CGAAGAAGGAGGATGAGGCCGGTCCCTCGACGGTGATGCCCATCGAGTCCTCTTCCGAGGAGGACTGGGTAGACTTCTC-
-----GGAGGA------GGAGGAGGAGGGGTGCGACGACCCGACAAAGGAGGAGTTCTGGGAGCAGTTCCGTAGCTCCG-
--ACGAGGAGTAGTTTATCTAGCAGTTTGAGTAAGTAGTAGTTGAAGTTTATGTATGAAACTATGTTGAATTTGATGTTT
GAACTATGTTGAATGGGCTAGTAGTATGTC-GTT--------TTTACATCTTCATTTTGAACCATCTATTGGAGTTGCTC
TTTTGGACCATCAATTTGGACCATCTGTTGGAGATGAGCTTTTTTCGGAGCTCCAAAACGCACCTTTTAGTGGTCCAAAT
TTTACATCTTCGGTTTTGGACCGCCAAATTTTGGACCATCTATTAGAGATGCTCTAAAA---------------------
--------------------------------------------------------------------------------
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-------------------
>chr4A_979
--------------------------------------------------------------------------------
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--------------------GGCTCCGTCCGCCACCGCCCCGGCCGCGCGCCGCTC----------CTGATGGTGCCGAA
GAAGACGCC-AAGGGCAAGTCGGGCTTCTTTGGCGTGAGGCAGAAGCCCTCTGG-CAACTGGGGTGTGGAGTTCTCCGAC
GCCGGAAGGCGTTGGTGGATCGGCACGTACCCCTCCACCCACGAGGCCGCGCGTGCCTACGACATGGCGGT---GCA---
TGCCGAGAGGCCTCGGTCGCACCTCAACTTTCCAGAGATCGAGAGTCGGGCGGAAGCGGAGATGCTTGTGCCGCGGGGCA
TCAACATAAAAGAGATCACGA---CAAAGAAGAAGAAGA---CGAAGAAGCCATCGGTTGTCGTCAGTGCTG--------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
----------------------------GCGAGATCGATGAGGAGGCGATGGCGAGGTTTGCTCGGGAGTATCCGGAGTA
CGTCT---------------------AGGCCGAGATGGAGTACTACTGGAAGCGTGAGGCGGAGCAGAAGAAGAAAGGGC
CGAAGAGGAAGGATGAGGTCGGTCCCTCCACGGTGATCCCCATCAAGTGCTCTTCCGAGGAGGACTGGATGGACTTCTC-
-----GGAGGA------GGAGGAGGAGGGGTGCGATGACCCGACGAAGGAGGAGTTCTGGGAGCAGTTCCGTAGCTCCG-
--ATGAGGAGTAGTTTATCTAGTAGTTTGAATAAGTAGTAGTTGAAGTTGATGTATGAAACTATGTTGAATTTGATGTTT
GAACTATGTTGAATGGACTAGTAGTATGTC-G-T--------TTTACATCTTCATTTTGGACCATCTATTGGAGTTGCTC
TTTTGGACCATCAATTTGGACCATCTGTTGGAGTTGAGCTTTTTTCGGAGCTCCAAAACGCTTTTTTTGACGGTCCAAAT
TTTACATCTCCGATTTTGGACCGCCAAAATTTGGACCATCTATTGGAGATGCTCTAA-----------------------
--------------------------------------------------------------------------------
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>chr6D_979
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--------------------GGCTCCGTCCGCCACCGCCCCGGCCGCACGCCGCTC----------CCGATGGCGCCGAA
GAAGACGTCGAAGGGCAAGTCGGGCTTCTTCGGCGTGAGGCAGAAGCCCTCTGG-TAACCGGGGTGTGGAGTTCTCCGAC
GCCAGAAGGCGTTGGTGGATCAGCACGTACCCCTCCGCCCACGAGGCCGCGCGTGCCTACGACGTGGCGGT---GTGGCG
TGCCGAGAGGCCTCGGTTGCACCTCAACTTTCCAGAGATCGAGAGTCGGGCGGTAGCGGAGATGCTTGTGCCGCAGGGCA
TCAACATGAAGGAGATCACGA---AGAAGAAGAAGAAGAAGAAGAAGAAGCCGTCGGTTGTCGTCAGTGCTG--------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------GCGAGACCGATG-GGAGGCGATGGCCAGGTTTGCTCGGGAGCATCCGGAGTA
CGTCC---------------------AGGCCGAGCTGGAGTACTACTGGAAGCGTGAGGCGGAGCAGAAGAAGAAGGGGC
CGAAGAAGGAGGATGAGGCCGGTCCCTCGACGGTGATCCCCATCGAGTCCTCTTCCGAGGAGGACTGGACAGACTTCTC-
--GGAGGAGGA------GGAGGAGGAGGGGTGCGACGACCCGACGAAGGAGGAGTTCTGGGAGCAGTTCCGTAGCTCCG-
--ATGAGGAGTAAAACATCTAGCAGTTTGAATAAGTAGTAGTTGAAGTTGATGTATGAAACTATGTTGAATTTGATGTTT
GAACTATGTTGAATGGACAAGTAGTATGTCAT-T--------TTTATATCTTCATTTTGGACCATCTATTGGAGTTGTTT
TTTTGGACCATCAATTTGGACCATCTGTTAGAGATGAGCTTTTTTCGAAGCTCCAAAACACACTTTTTGACGGTCCAAAT
TTTACATCTCTGATTTTGGACCGCCAAATTTTAGACCATCTATTGAAGATGCTCT-------------------------
--------------------------------------------------------------------------------
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-------------------
>chr7D_980
--------------------------------------------------------------------------------
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---------------------GCCCCGCCCGCCACCGCCTTGCCCGCACGCCGCTC----------CCGATGGCGCCGAA
GAAGACGCCGAAGGGCAAGTCGGGCTTCTTCGACGTGAGGCAAAAGCCGTCCGG-CAACTGGGGTGTGGAGTTCTCCGAC
GCCGGAAGGCGTTGGTGGATCGGCACGTACCCCTTCGCCCACGAGGCCGCGCGTGCCTACGACGTGGCGGT---GTGGCG
TGCCGAGAGGCCTCGGTCGCACCTCAACTTTCCAGAGATCGAGAGTCGGGCGGTAGCGGAGATGCTTGTGCCGCAGGGCA
TCAACATGAAGGAGATCACGA---CGAAGAAGAAGAAGAAGATGAAGAAGCCGTCGGTTGTCGTCAGTGCTG--------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------GCGAGACCGATGAGGAGGCGATGGCGAGGTTTGCTCAGGAGCATCCGGAGTA
CGTCC---------------------AGGCCGAGCTAGAGTACTACTGGAAGCGTGAGGCGGAGCAGAAGAAGAAGGGGC
CGAAGAAGGAGGATGAGGACGGTCCCTCGACGGTGATCCCCATCGAGTCCTCTTTCGAGGAGGACTGGGCAGACTTCTC-
--------GGA------GGAGGAGGAGGGGTGCGACGACCCGACGAAGGAGGAGTTCTGGGAGCAGTTCCGTAGCTCCG-
--ATGAGGAGTAGTTTATCTAGCAGTTTGAATAAGTAGTAGTTGAAGTTGATGTATGAAACTATGTTGAATTTGATGTTT
GAACTATGTTGAATGGACTAGTAGTATGTC-T-T--------TTTACATCTTCATTTTGGACCATCTATTGGAGTTGTTC
ATTTGGACCATCAATTTGGACCATCTGTTGGAGATGAGCTTTTTTCGGAGCTCCAAAACACACTTTTTGGCGGTCCAAAT
TTTACATCTCTGGTTTTGGACCGCCAAATTTTGGACCATCTATTGAAGATACTCTAAA----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------
>chr5D_981
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
----------------------CTCCGCCCGCCACCGCCCCGGCCGCACGCCGCTC-CACCGCTCTCCGATGGCGCCGAA
GAAGACACCAAAGGGCAAGTCGGGCTTCTTCGGCGTGAGGCAGAAGCCCTCCGG-CAACTGGGGTGTGGAGTTCTCCGAC
GCCGGAAGGCGTTGGTGGATCGGCACGTACCCCTCCGCCCACGAGGCCGCGCGTGCCTACCACGTGGCGGT---GTGGCG
TGCCGAGAGGCCTCGGTCGAACCTCAACTTTCCAGGGATCGAGAGTCGGGCGGAAGCGGAGATGCTTGTGCCGCAGGGCA
TCAACATGAAGGAGATCACGATAAAGAAGAAGAAGACGA---AGAAGAAGCCGTCGGTTGTCGTC-GTGCTG--------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------GCGAGACCGATGAGGAGGCGATGGTGAGGTTTGCTCGGGAGCATCCGGAGTA
CGTCC---------------------AGGCCGAGATGGAGTACTACTGAAAGCGTGAGGCGGAGCAGAAGAAGAAGGGGC
CAAAGAAGGAGGATGAGGCCGGTCCCTCGACGGTGATCCCCATCGAGTCCTCTTCCGAGGAGGACTGGGCAGACTTCTC-
--------GGA------GGAGGAGGAGGGGTGCGACGACCCGACGAAGTAGGAGTTCTGGGAGCAGTTCCGTAGCTCCG-
--ATGAGGAGTAGTTTATCTAGTAGTTTGAATAAGTAGTAGTTGAAGTTGATGTATGAAACTATGTTGAATTTGATGTTT
GAACTATGTTGAATGGACTAGTAGTATGTC-GTTTTA---------CATCTTCATTTTGGGCCATCTATTGGAGTTGCTC
TTTTGGACCATCAATTTGGACCATCTGTTGGAGTTGAGCTTTTTTCGAAGCTCCAAAACGCATTTTTTGACGGTCCAAAT
TTTACATCTCCCGTTTTGGACCGCCAAATTTTGAACCATCTATTGAAGATGCTCT-------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------
>chr3D_987
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------CCGCCACCGCTCC--------ACCGCTCTCACCGCTCTCCGATGGCGCCGAA
GAAGATGCCGAAGGGCAAGTTGGGTTTCTTCGGCGTGAGGCAGAAGCCCTCCGG-TAACTTCGGAGTGGAGTTCACCGAC
GCCGGAAGGCGTTGGTGGATCGGCACGTACCCCTCCGCCCACGAGGCCGCGCGTGCCTACGACGTGGCGGT---GTGGCG
TGCCGAGAGGCCTCGGTCGCACCTCAACTTCCCAGAGATCGAGAGTCGGGCGGAAGCGGAGATGCTTGTGCCACAGGGCA
TCAACATGAAGGAGATCCCAA---CGAAGAAGAAGACGA---CGAAGAAGCCGTCGATTCTCGTCAGTGCTG--------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------GCGAGACCGACGAGGAGGCGATGGCGAGGTTTGCTCGGGAGCATCCGGAGTA
CGTCC---------------------AGGCCAAGCTGGAGTACTACTGGAAGCGTGAGGCGGAGCAGAAGAAGAAGGGGC
CGAAGAAGGAGGACGAGGCCGGTCCCTCGACGGTGATCCCCATCGAGTCCTCTTCCGAGGAGGACTGGGCAGACTTCTC-
--------AGAAGAGGAGGAGGAGGAGGGGTGCGACGATCCGACGAAGGAGGAGTTCTGGGCGCAGTTCCGCAGCTCCGG
CGATGAGGAGTAGTTTATCTAATAGTTTGAATAAGTAGTAGTTGAAGTTCATGTATGAAACTATGTTGAATTTGATGTTT
GAACTATGTTGAATGGACTAGTAGTATGTC-GTTTTAAGAAATTTACATCTTCATTTTGGACCATCTATTGGAGTTGCTC
TTTTGGACCATCAATTTGGACCATCTGTTGGAGTTGAGCTTTTTTCGGAGCTCCAAAACGCACTTTTTGGCGGTCCAAAT
TTTACATCTCCGGTTTTGGACCGCCAAATTTTGGACCATCTATTGGAGATGCTCT-------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------
>chr7A_991
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------CACCGCCCCGGCCGCACGCCGCTC----------CCGATGGCGCCAAA
GAAGACGCCGAAGGGCAAGTCGGGCTTCTTCGGCGTGAGGCAGAAGCCCTCCGG-CAACTGGGGTGTGGAGTTCTCCGAC
GCCGGAAGGCGTTGGTGGATCGGCACGTACCCCTCCGCCCACGAGGCCGTGCGTGCCTACGACGTGGCGGT---GTGGCG
TGCCGAGAGGCCTCGGTCACACCTCAACTTTTCAGAGATCGAGAGTCGGGCGAAAGCGGAGATGCCTATGCTGCAGGGAA
TCAACATGAAGGAGATCACGA---CGAAGAAGAAGAAGA---CGAAGAAGCCGTCGGTTGTCGTCAGTGCTG--------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------GCGAGACCGATGAGGAGGCGATTGTGAGGTTTGCTCGGGAGCATCCGGAGTA
CGTCC---------------------AGGCCGAGATGGAGTACTACTGGAAGCGTGAGGCGGAGCAGAAGAAGAAGGGGC
CGAAGAAGGAGGATGAGGCCGGTCCCTCGACGGTGATCCCCATCGAGTCCTCTTCCGAGGAGGACTGGGCAAACTTCTC-
--------GGAGGAGGAGGAGGAGGAGGGGTGCGACGACCCGACGAAGGAGGAGTTCTGGGAGCAGTTCCGTAGCTCCG-
--ATGAGGAGTAGTTTACCTAGTAGTTTGAATAAGTAGTAGTTGAAGTTGATGTATGAAACTATGTTGAATTTGATGTTT
GAACTATGTTGAATAGACTAGTAGTATGTC-GTTTA---------ACATCTTCATTTTGGACCATCTATTGGAGTTGCTC
TTTTGGACCATCAATTTGGACCATCTGTTGAAGTTGAGCTTTTTTTGGAGCTCCAAAACGCACTTTTTGACGGTCCAAAT
TTTACATCTCCGCTTTTGGACCGCCAAATTTTGGACTATCTATTAGAGATGCTCTAAA----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------
>chr3D_1029
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
GAAGACGCCGAAGGGCAAGTCGGGCTTCTTCGGCGTGAGGCAGAAGCCCTCCGG-CAACTGGGGTGTGGAGTTCTCCGAC
GCCGGAAGGTGTTGGTGGATCGGCACGTACCCCTCCGCCCACGAGGCCGCGCGTGCCTACGACGTGGCGGT---GTGGCG
TGTCGAGAGGCCTCGGTCGCACCTCAACTTTCCAAAGATCGAGAGTCGGGCGGAAGCGGAGATGCTTGTGCCGCAGGGCA
TCAACATGAAGGAGATCACGA---CGAAGAAGAAGAAGA---CGAAGAAGCCGTCGGTTGTCGTCAGTGCTG--------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------GCGAGACCGATGAGGAGGCGATGGCGAGGTTTGCTCGGGAGCATCCGGAGTA
CGTCC---------------------AGGCCGAGATGGAGTACTACTGGAAGCGTGAGGCGGAGCAGAAGAAGAAGGGGC
CGAAGAAGGAGGATGAGACCGGTCCCTCGACGGTGATCCCCATCGAGTCCTCTTCCGAGGAGGACTGGGCAGACTTCTC-
--GGAGGAGGA------GGAGGAGGAGGGGTGCGACGACCCGACGAAGGAGGAGTTCTGGAAGCAGTTCCGTAGCTCCG-
--ATGAGGAGTAGTTTATCTAGTAGTTTGAATAAGTAGTAGTTGAAGT-GATGTATGAAACTATGTTGAATTTGATGTTT
GAACTATGTTGAATGGACTAGTAGTATGTC-GTTTT---------ACATCTTCATTTTGGACCATCTATTGAAGTTGCTC
TTTTGGACCATCAATTTGGACCATCTGTTGGAGTTGAGCTTTTTTCGGAGCTTCAAAACACACTTTTTGACGGTCCATAT
TTTACATCTCCGATTTTGGACCGCCAAATTTTGAACCATCTATTGGAGATGCTCTAA-----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------
>SNPs
--------------------S-SS---SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSS---------------------------------------S----S--------S------S--------S
---S-----S--------------------S-SS----------S---S--S----------------------------
-----------------S-----------------------------S----S--------S------------------
-----------------S--S----S-------------------------SSS---------------S-SSSSSSSSS
SSSS----------------------------------------------------------------------------
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----------SSS-S-SS-S-S-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSS----------------------------------------------------S-------
--------------------------------------------------------------------------S-----
----------------------------------------------S---------------------------------
---------------------------S----------S------------------------S----------------
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--------------------------------S-----------------------------------------------
---------------------------------------------------------------S---------------S
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--------------------S-----------------------------------------------------------
-------------------------------------------------------------S--S---------------
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--------S--S--------------------------------------------------------------------
-----------------------------------------------------------SSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSS-----S-----------------------------S----SSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSS
>forward_56
------------------------------------TAACCTAACCTGGCGAGGGA------------------------
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>reverse_2948
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-------------------------------------------------------------------ATCTGTCCATCTT
GGGAGGC-------------------------------------------------------------------------
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-------------------
