>input_sequence_73458
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----------------ATGGGTGGTTCCACTCTGTGCAGATGGCCCCTCAGCTTGGTCTACATGCAGGATATAACAACCG
ACAAGGAGGACTGGAGTCAAGAACATCGTGATATGACAGCGCTGGTGGTTTGTGGTGACATGCT----------------
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-------------------------------------------------------------------TATCGTTTTTATT
CCCTTCCCTTGGGAGCTCTACCGCCTCGACGTGTCGACCGAGCCCGCGACAGTGCTGCCCATGGAGAAGCTGGATGATTG
GGCGCTCTTTCTGGGGGCAGAACCAAACGGCATGCCACTTTCGTGCATGAGCCCGCCCGGAAAAATGGGGAGGGAGGAGC
AACACCTCGTACTGTGTCGGCTATGGCTCTCAGCCTTGTACTCCCTCTGTAAACTAATATAAGAGTGTTTAGATAACTAA
AATAGTGATCTAAACGCTCTTATAATAGTTTACGGAGGGAGTACTTTCCACGGACTGCGTGAGGAGCCGGATCCTGTGTT
GGACACGCCGCCCGTTGACTGTGACCATTGGAATCCGCCGCTTTCTCGCGCTCACAGGGACCGCTACTCCGACCCTTGGG
CTATACGCTGGTACGGCGAACAGGACCCCGTGGAGTTAGCTCTGCCACTCTGGCCGTACCCAAGCATGTTCTACTATGGT
GCCGGAGAGTGA--------------------------------------------------------------------
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>chr6A_1_TraesCS6A01G372900
CCTGCAGAGATGATCGATCTGCACCTGTCACATTTGCTTACAGAAAGAATACTCATAGGGATACATTTCCATGGGCAAGT
ATCTTCTTGCCCTGGGCA----CTGTTAGCTTATTCCGAACATGAGAGGACCACCACTGAAATTTAACCGTATCAAAATT
GCCGCTTTTAGAGTTCCTTTGATTTTCATCAGCATACATGGATACCGTATATTTGTCCATCCAC---TCTTATTATTCCT
GGTGCAATAACAAGTTTGTTTGATTACATTGATAGATAGATAGGCATATACTCTCTATCAAACCTGCAAAACATCATTTT
CTTATCT-------------------------------------------------------------------------
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-----------AGTATATTCTAATTAACATGCTACTTATGCCTCTTATTATTTATTAAGCAGCTCACTG-TTTTTCTACT
GCTTGCAGATAGTTTGCCATCAGCAGAGCGCCATGCAAAACCCCAGCAGGCGGCCCACTGTCTCTCTCGCTGGACCCCCT
GCTTGTTCCGGTATCCAAGGTTGGGCTGACCTCCCAGATGAGTTGCTTCATCCCATCGTTGCTCGATTGCGCTCTTTTCG
AGACATTCTTGGCTTCGCCGCAACATGCCCCTCTTGGCGTACTGCCTACTCTTCATACCCATCGAAATCTACATTCCGCA
CAAAATTCCCACCTCTCCTCATCCAGCCCCGTGTCCGTCATGTACAAGGTCCTCTTCTTCCTTCTACTGATGGTTGCCGT
GAGCTACTCAAATGTAAGGATATTGATCCTGCCAACCCGAACGCCGCCCTTCACTGCCAGATTCCTCGAGAAACCCTGGA
GAATATAAAATGTATCGGCTCTTCCTATGGTAATATCATCTACTACCGCGAAGGATATTGTCGCATCGTCGATGTCTTCA
CTCTTCACTGGTGTGGAGGTTTCAGCTCCATGTCTCCCACCCAGTGCCAAGTGTTCGATATACCGCTGTAATGGCATTCT
AACAGCCCCTGTCACATTCTCTCGG-------------------------------------------------------
---------------------------------------------------------------------ATGTTCAGTTC
ATTCTCTCGGATGGCAATGGGTGGTTCCACTCTGTGCAGATGGCCCCTCAGCTTGGTCTACATGCAGGATATAACAACCG
ACAAGGAGGACTGGAGTCAAGAACATCGTGATATGACAGCGCTGGTGGTTTGTGGTGACATGCT----------------
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-------------------------------------------------------------------TATCGTTTTTATT
CCCTTCCCTTGGGAGCTCTACCGCCTCGACGTGTCGACCGAGCCCGCGACAGTGCTGCCCATGGAGAAGCTGGATGATTG
GGCGCTCTTTCTGGGGGCAGAACCAAACGGCATGCCACTTTCGTGCATGAGCCCGCCCGGAAAAATGGGGAGGGAGGAGC
AACACCTCGTACTGTGTCGGCTATGGCTCTCAGCCTTGTACTCCCTCTGTAAACTAATATAAGAGTGTTTAGATAACTAA
AATAGTGATCTAAACGCTCTTATAATAGTTTACGGAGGGAGTACTTTCCACGGACTGCGTGAGGAGCCGGATCCTGTGTT
GGACACGCCGCCCGTTGACTGTGACCATTGGAATCCGCCGCTTTCTCGCGCTCACAGGGACCGCTACTCCGACCCTTGGG
CTATACGCTGGTACGGCGAACAGGACCCCGTGGAGTTAGCTCTGCCACTCTGGCCGTACCCAAGCATGTTCTACTATGGT
GCCGGAGAGTGATCCG--------------------------------------CCTCTTCGAAGGCTTCCATTTGGTCT
GAGTGTGTTGGCGGCCGCGTTAGTGCCGTGAGCTTGCTACAGTTAATTATTACCCAAGTCTCATGATGTTGGTCTGCCGA
CTTTACCTATGCTCTCTCTGTTTAATAAGTAATACTTTCACTAAGTGTCTAGTACTGTACTTTATATAGTTGGCACAGGG
GCACACGCCCTATCAATTTGCATGCTACTGTCGTGTATACTCACTTGCTATATATTCAGGACATGGTTCTGAAGCAGCCA
TGGCAGCTTCTTATCGTTTCAGTGCTTCGATAGTCCGAACATGCCTTATGATT---------------------------
-----------------------------------ATAAAAGTGAAAGAATCTTTACTGCTGCTCCGATAGTTCATATTA
GTCCTGATTTCACTTCGATTGCGGCAGAGATGCGCCGTTGAGGCCCGTGTTGTGGCCGGCCTTCCACCGACCTCGGACGA
GGAGGGGGT----TGGCCCGTGCTCAGAGGAGATACCAATGGGCAATGGCGGCTCACCCAAACGCCACCGGGT-------
-------GATGTGGAAATCTTGGTGG------------------------------------------------------
------------------------------------------------------------TTCATTTGCAGCTGTAGCGA
GTAATGTACTCCTACTAGTAGTTGAGGAGTGGTAGGACGGGGCCAATCCTAGTCGAGGAGTTTATCTGGACTACTGGTAA
CAATGTGGTCAATCTGGTATGCGAGACGGAAAGCAATTTTTGGTGATGAATATCAGAGCCCTTTATCAACATTCAGTTTC
ATTAATAAATTTCCGAGTGATCTCGATTTCATTCGGGAGCAGAAACCTGCGAGACAGACTAGTTGTGTTGCAACTTGCAA
GGGACCTAAGTGGATTGCGCCGCCTCCGAATATCATGAAGATCAATGTTGACGCAGCTTTATTTTGGCGAAATCAGCCAA
TAAGGGGGCGGTCTC-GCTGTTGCCAGAACTGCTACAGGGGAGCGACTACTTGGGGTGTTGGTCTGTAACTTTTGAAGGA
CTGTCCGATCCAGCAATTCTGGAGAACTTGGCATGCAGAGAAGCT
>chr6D_12
GATGA------------TCTGCACCTGTCACATTTACTTACAGAAAGAATACTCATAGGGATACATTTCCATAGGCAAGT
ATCTTCTTGCATGTCCTGGGTGCTATTAGCTTATTCCGAATACGAGAGGACGACCACTGAAATTTAACCATATCAAAACT
GTCGCTTTTAGAGTTCCTTTGA--TTCATAAGCACACATGGATATCGTATATTTGTCCATCCACTCTTCTTATTATTTCT
GGTGCGATAACAAGTTTGTTTGATTGATA-GATAGATAGATAGGCATATACTCTTTATCAAACCTACAAAACATCATTTT
TCTTATCTAGTACTCCCTCCGTTCCTAAATATTTGTTTTTCTAGAAATTTCAACAAGTGACTACATACGGGGCAAAATGA
GTGAATCTACACTCTAAAATATGTCTATATACATACGTATGTGATAGTCCATTTGAAATCTCTAAAAAGACAAATATTTA
GAAACGGAGGGAGTATATTGTAATTAACATGCTACTTATGCCTCT---TATTTATTAAGCAGCTTACTG-TTTTTCTACT
GCTTGCAGA--GTTTGCCATCAGCAGAGCACCATGCAAAACCCCAGCAGGCGGCCCACTGTCTCTCTCGCTGGACCCCCT
GCTTGTTCCGGGATCCAAGGTTGGGCTGACCTCCCAGATGAGTTGCTTCATCTCATCGTTGCTCGGTTGGGCTCCTTTCA
AGACATTCTTGGCTTCGCCGCAACATGCCCCTCTTGGCGTACTGCCTCCTCTTCATACCCATCGAAATCTACATTCCGCA
CAAAATTCCCACCTCTCCTCATCCAGCCCCGTGTCCGTCATGAACAAGATCCTCTTCTTCCTTCTACTGATGGTTGCCGT
GAGCTACTCAAATGTAAGGTTATTGATCCAGCCAACCCGAACGCCGCCCTTCACTGCCAGATTCCTCAAGAAACCCTGGA
GAATATGAAATGTATCGGCTCTTCCTATGGTAATATCATCTACTACCGCGAAGGATATTGTCGCATCGTCGATGTCTTCA
CT-------GGAATGGAGGTTTCAGCTCCATGTCTCCCACCCAGTGCCAAGTGTTCGATATACCGCTGTAATGGCATTCT
AACAGCCCCTGTCACATCACCCAACTCACATCTCATTGTCAGTACCAGCACCTACCACAAGTCCTACTTATTTGATTGGC
GTGTTGGAAGCGACTCTTGGTCCCAAGCCCAGCTTCCTTATATGTATACGGACCAGATTGTGGAATTCAATGGTCAGCTC
ATTCTCTCGGATGGCAATGGGTGGTTCCACTCTGTGCAGGTGGCCCCTCAGCTTGGTCT----GCAGGAGATAACAACCG
ACAAGGATGACTGGAGTCAGGAACATCGTGATATGACAGCGCTGGTGGTTTGCGGTGACATGCTTATCCCGTTGACCGTT
TTTACGGTACCCTGTACTGCTGACCGAAGAGGGAGCAGTATATTAAAATCTGACCATCGATTTTCTGAGGATAGGGTAGA
CATTGAAGTTTAAAAATTAGCTAGAGATTTCATTTTCTAGGCAACACTGGCCGCAGATTCATCTGTTCGCCCCCTTCTCC
CTGTCGTAGTCATAGCCCTCCCATCGCCGTGGTCTCATCTGCCCGGCACTACCAGCTGCCGTCGTGGACAAGCAGTGTGC
ACCTGGAGCCATCGGATATCCGGAAGGCGGAGACGTCGGTTCAGAGGTCCTAAACCTTTTCGGCCCAGCTGTCCTCGCTG
AGGGAGGAGGCGGCGGTCCAGTCCCCGGAGAGCGAGACGGCGTCGCTGAATTCGGCGACGTGGCCAAGCTGGGGTGAGGC
GGTGCGCTGCCAGAGGTTAAGCGGCGGATGGTGCAGGGCGTCGGCAGGGACTTTCGTGGAGACGAAGACGATGAGAGAGC
AGTCGCCGGTGAGCGCCAGGGCGACGGGCTCCTAGGAGAGCAGCGGTGTCAGGGGCCTCCTCGAGCTCCTCGCGGCAGGA
GGAAAAGGGTGTGTTGGGCCATGTCGACACTCGACACTCATGCGAGCTGAACTTTTACGTCCCAAAGTACCCTTAGAATA
GTATACTCGAGGACGGGAACAAAGCAGTGCCAGCTATACTGCTCGTGATTTTGTCAATTGGAGCAGTCCGTGGAAAGTAC
AAGACTGAGAGCCATAGCCGGCACAGTACGAGGTGTTGCTCCTCCCTCCCCATTTTTCCGGGCTCATGCATGAAAGTGGC
ATGCCGTTTGGTTCTGCCCCCAGAAAGAGTGCCCAATCATCCAGCTTCTCCATGGGCAGCATTGTCGCGAGCTCGGTCGA
CACGTCGAGGCGGTAGATTTTGTCAATGGACGGCCCATATTTGTCGCTGGGTACCATAAAAGAGCTCTATCGTTTTTATT
CCCTTCCCTCGGGAGCTCTACCGCCTCGACGTGTCAACCGAGCCCGCGACAATGCTGCCCATGGAGAAGCTGGATGATTG
GGCACTCTTTCTGGGGGCAGAACCAAACGGCATGCCACTTTCGTGCATGAGC----CCGGAAAAATGGGGAGGGAGGAGC
AACACCTCGTACTGTGCCGGCTATGGCTCTCAGCCTTGTACT--------------------------------------
---------------------------------------------TTCCACGGACTGCATGAGGAGCCGGATCCTGTGTT
GGACACGCCGCCCGTTGACTGTGACCATTGGAATCCGCCGCTTTCTCGCGCTCACAGGGACCGCTACTCCGACCCTTGGG
CTATACGCTGGTACGGCGAACAGCACCCCGTGCAGTTAGCTCTGCCACTCTGGCTGTACCCAAGCATGTTCTACTATGGT
GCCGGAGAGTGATCCGCCCCGCCGGCCCGGCCACGGCTCTCGCCGCGGCACTGCCCTCTTCGAAGGCTTCCATTTGGTCT
GAGTGTGTTGGCGGCCGCGTTAGTGCCGTGAGCTTGCTACAGTTAATTATTACCCAAGTCTCATGCTGTTGGTCTGGAGG
CTTTACCTATGCTCTCTCTGTTTAATAAGTAATACTTTCACTAAGTGTCTAGCAA-GTACTTTATATAGTTGGCACAGGG
GCACATGCCCTATCAATATGCATGCTACTGTCGTGTATACTCACTTACTATATATTCAGGACATGGTTCTGAAGCAGCCA
TGGCAGCTTCTTATCGTTTCAGTGCAGTGCGTCTGCGCATGCAGCTGTTCGGTGACTCGCATGTTTTGAGGAATGTCACT
CGCATACATTATCTGGTACTGAAGGTTGTTTCACAATAAAAGTGAAAGAATCTTTACTGCTGCTCCGATAGTTCATATTA
GTCCTGCTTTCACTTCGATTGCGGCAGAGATGCGCCGCTGAGGCCCATGTTGTGTCCGGCCTTCC---------------
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>chr6B_204
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-----------------------------------------------TATATTTATCAGTCCAG---GGTTCTTATTACT
GGTGCATG-ACAAGTTTGTTTGATAGGTA-GATAGATAGATAGGCATAAA--CTCTATCTCACCTGCAAAACATCACCTG
CTTATCCATGG---------------------------------------------------------------------
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-----------------TTTTAATTAACATGCTACTTACGTCTCC---TATTCCTTAAGCGGCTCACAGTTTCTTTTACT
GCTTGCAGA--GCTTGCCGTCAGCAGCGCATCATGCAAAACCCCAGCAAACTGTCCGCCGTCTCTCTAGCCAGACCCCCT
GCTTTTTCCGGGCTCCAAGGTTGGGCTGACCTCCCAGATGGCTTGCTCCATTCCATCGTTGCTCGGTTGGCCTCTGTCCG
AGACATTCTTGGCTTTGCTGCAACATGCCCCTCTTGGCGTGCTGCGTT---TTCCTACCCATCCAAATCTACGTTCCGCA
CAAAATGTCCGCCTCTCCTCATCCAACCCAATGTTCGT---GTACAAGGTCCTCTTCTTCCTTCTACTAATGGTTGCCGT
GATATGTACACATGTAAGGTTATTGATCCAGCCAACCTGAAAGTCGCCCTTCATTGCCAGATTCCTCAAGAAACCCTGGA
GAAGATGACATGTATCGGCTCTTCCTATGGTAATCTCATCTACTACCGCAATCGGTATTGTCGCATGGTCGATGTGTTCA
CA-------GGTGTGGAGGTTTCAGCTCCACGTCTCCCACCCATTGCCAAGGGCCCAAAATTTTGGCTGTATGGCATTTT
AACAGCCCC-----------------------------------------------------------------------
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>chr6A_379
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----------------------------------------------------------------------TTTTTCCATT
GCTTGCAGA--GTTTGTCATCAGCAGCGCATCATGGAGAGGCCCAGCAAACTGCCTGCCGTCTCTCTCCTCGGAACCCCT
ACGTTTTCGGGACCCCAAGGTTGGGCTGACCTCCCAGATGGCTTGCTTCACTCCATCGTTGATCGGCTGGGCTCCTTCCG
AGACCTTCTTGGCTTCGCCGCGACATGCCCCTCGTGGCAGGCTGCCTACTTGGCATACCCATCCAAATCTATATTCTGCA
CAAAATTCCCACCTCTCCTCATCCAGCCCCGTGTCCGT---GCACAAGGTCCTCTTCTTCCTTGTACTGGCGGTTGCCAT
GAGCTAGTCACATGTAAGGTTATTGATCCAGCAAACCCAAACACGGCCCTTCGCTGCCGGATCCCTCAAAAAACGCTCGA
GATGAAGTTG---ATAGGTTGTTCCTATGGTAATGTCATCTACTACTGCGACGGATGCTGTCGCATCGTCGATGTGTTCA
CT-------GGTGTGGAGGTCTCAACTCCACGTCTCCCATCCAGTG----------------------------------
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>chr6D_2062
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------------------------------------------------------------CTTCCACCGACCTCGGACGA
GGGGGGGGGGGGGTGGCCCGTGCTCAGAGGAGATACCGATGGGCAATGGCGGCTCACCCAAACGCCACCGGGTTGGAGGT
GGTGGATGACGTAGAAATCTTGGTGTGGGGTTTGTAATCTTGGTTTTCGCCCGGTTTTCCTCTAATTAACCGGGCAACTC
TCTTCTTCTTAATCAATGAAAATGGCAAATCTTTTGCCTCGTTTCAAAAAAAAAATTTACTTCATTTGCAGCTGTAGCGA
GTGATGTACT---------AGTTGAGGAGT-GTAGGGCGGGGCCAATCCTAGTCGAGGAGTTTATCTGGACTACTGGTAA
CAATGTGGTCGATTTGGTATGCGAGTCGGAAAGCAATTTTTGGTGATGAATATCAGAGCCCTTTGTGAACATTCAGTTTC
ATTAATAAATTTCTGGGTGATCTCGATTTCATGCGGGAGGAGAAACCTGCGAGACAGACTAGTTCTG-------TTGCAA
GGGGCCTAAGTGGATCGCGCCGCCTCCAAATATCATGAAGATCGATGTTGACGCAGCTTTAATTTGACGAAATCAGCTAA
TAAGGGGGCAGTCGCGGCTGTTGCCAGAACTGCTACAGGGGAGTGGGTACTTGGGATGTTCGTCTGTAACTTTTGAAGGG
CTGTCCGATCCAGCAATTCTGGAGAGCTTGGCATGCAGAGAAGCT
>SNPs
SS--SSSSSSSSSSSSS------------------S------------------------------------S-------
----------SSSSSSSS------S---------------S-S--------S-----------------S--------S-
-S--------------------SS-----S----S---------S--------------------------------S--
-------------------------SSSSS--------------------------------------------------
------S-------------------------------------------------------------------------
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-------------------S-------------------------SSS--------------------------------
---------SS------------------S--------------------------------------------------
-----------S-----------------------------------------------------S---S----------
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-------------------S---------S-------------------------------------S------------
------S-------------------------------------------------------------------------
--SSSSSSS-----------------------------------------------------------------------
-----------------SSS-SSSS-------------------------------------------------------
------------------------------------------------------------------------S----S--
---------------------------------------S-------------------SSSS------S----------
-------S-----------S--------------------------------S---------------------------
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---------S-------------------------S---------------S----------------------------
---S------------------------------------------------SSSS------------------------
----------------S-------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------------S---------------------
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-----------------------S--------S---------------------S-------------------------
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-----------------------------------------------------------------S----------SS-S
----------------------------------------------------S-SS------------------------
-----S-----------S----------------------------S---------------------------------
-------------------------SSS-SSSS-S--S-SSSSS--SS-SSS----------------------------
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------S------------------------------S--------S-------S-------------------------
--S-----S----------------------------S------------------------------------------
---------S--S------------S------------------------------------------------------
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--S-------SSSSSSSSS-----------S-----S-------------------------------------------
----------S--S-----------S--------------------------------------S-S-------------
-------------S-S----------------S------S------------------------S--SSSSSSS------
---S-----------S-----------S---------------S-----------------S----S----------S--
---------S---S-----------------------------S-SS--------S----S------------------S
-------------------------S-------------------
>forward_1145
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-----CCCCTGTCACATTCTCTCGG-------------------------------------------------------
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>reverse_4106
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-------------------------ACTTGGCATGCAGAGAAGCT
