>input_sequence_73452
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------------------------------------------------------------------ATGGCGGAGGTGGA
GAGGAAGGCGCCGCGGAGGGAGGAGGAGCTGGTGGAGGCGGCGCTGGCGGCGGCCGCGGCCGCGCTGTTCGTGTCCGGGG
TCAAGAGCCTGGCGCCGGCCGTGCTCGTGGACCGCTGGTGGTGGCCCCTGCCCGCGCAGGTGCTCGCCGCGGCGCCGTCG
CCCGTCCTCTTCCTGCTCCTCAACGTCCTCGTCGCCTGCATCGTCGTGGTGTCCGTGCAGCCGGCCAAGCGAGCGGCCGC
GGCGGCGGCGACGGGCGCCGTCGCTGCGGAGGTGGCGCCGGCGGGCGACGGCGCGGCGAAGAAGCTGAAGAAGAGGCGGA
GCAGCAAGAGGCGCGGGGACGGAGCCGAACCGGCGGTTCTTGCGCCCGCGCCACCCTACGTCGCGGCCGACCGCTGCATG
GCGCTGGTGGTTGACCGCGGCATCGTGATGGCGCCGACGGGCGGAGAAGAAGAAGAAGAAGAAGGAGCCGCCGGCGACGC
GGCGGAGGTGGACAGGCGCGCGGAGGAGTTCATTTCGGCGTTCCGGCACCGCCTCAGGGTCGACTCCTTCTCGTCTCGCC
GCGGGGAAGCCGGCGACGCGGCGGCGCGAGCCATCAGCGGCACCGCGCCGTGCTTTTGA---------------------
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>chr5D_1_TraesCS5D01G337300
CCACTTACTTTGGGACCTAGGGAGTATTTGCTTTTAGAAAGGTTTTCACCTCGGTTACACTGGAACCAAGAGGCTAAGAA
ATTTTTATTTTCTGTGTTATGATGTT-CAGTGCATTTGGTTACCGTATGAATGTACGGTGGACGCGCATTCGATTCTAAT
CTCGTGGTTAAACTAGCAATGACTAGAGTCATCGACTCATTATGGGGAATCTTTGGTCTACCCAGCCGTATTATCCACAT
ACTACTAATCACAAGCAGCCTGGTTAGTGGTTACAGCCTAGTGGTAGC---AGTACAATCATCTGAGTGGTAGT---TTT
ATATTTTG----CTGGTTTGGGCGGCATCGTTCGTTCTAGGTAGTACGTATATGCTCCTCTTTCTGGCTCCCCGACCCGA
TGAAGAAAAGGGTCATCATCGTGTCCGCCACGCGGACGGGACAAACGACGACGACGCACGAGCCTCCGGCGTGCGCCCCT
AG----------CCTCTCCCCTCGATGACACAAAACAAAAC-TAAAAGATGCCGCCCGGATGCTCGATTAGCCACGAGTG
GTACTATTATTTCGTCTTTGCAGATGTGATTAGCGAGCTA---ATCAGTAGATAAACACGCCTGCTAGC-----------
-----------------------------------------------------CATGACAGAGAATTTGCTGCGCTGCAC
T-------------------------------------------------------------------------------
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-----GCGTTGAGTTGAGTGGCCCTGCAGCCTGCAGCCTGCGGATGGGAGAAAT------GTAATGCTCTGCCGCTGCCA
TGGTCGGAGCCTCGGAGGGAATTTAATCCCCCGACAGCGCCTCGCACGGGCTGCGTGCTTTGCCCTGCTGCCGGCGCGAC
AGGCACCCCT-------GCGGCCATCGATTGCTCTCACGAGCCCTGCCCTTTTGGCGCCTGCCCTGGCTGCCCGCTCGGC
TCTATACATATAGCTCCGCCACCCCGGCGCAAAGGCGAGCAAAAGCCGGCCGAGCAGAGGCAGCTAGCGCAAGAAAGCGT
CGTGCCGTGCGTGCCCAGAGCGCAAACCACCGGGGAGCAGAGAGAGAGAGAGAGGCGGCAGGGTTGATGGCGGAGGTGGA
GAGGAAGGCGCCGCGGAGGGAGGAGGAGCTGGTGGAGGCGGCGCTGGCGGCGGCCGCGGCCGCGCTGTTCGTGTCCGGGG
TCAAGAGCCTGGCGCCGGCCGTGCTCGTGGACCGCTGGTGGTGGCCCCTGCCCGCGCAGGTGCTCGCCGCGGCGCCGTCG
CCCGTCCTCTTCCTGCTCCTCAACGTCCTCGTCGCCTGCATCGTCGTGGTGTCCGTGCAGCCGGCCAAGCGAGCGGCCGC
GGCGGCGGCGACGGGCGCCGTCGCTGCGGAGGTGGCGCCGGCGGGCGACGGCGCGGCGAAGAAGCTGAAGAAGAGGCGGA
GCAGCAAGAGGCGCGGGGACGGAGCCGAACCGGCGGTTCTTGCGCCCGCGCCACCCTACGTCGCGGCCGACCGCTGCATG
GCGCTGGTGGTTGACCGCGGCATCGTGATGGCGCCGACGGGCGGAGAAGAAGAAGAAGAAGAAGGAGCCGCCGGCGACGC
GGCGGAGGTGGACAGGCGCGCGGAGGAGTTCATTTCGGCGTTCCGGCACCGCCTCAGGGTCGACTCCTTCTCGTCTCGCC
GCGGGGAAGCCGGCGACGCGGCGGCGCGAGCCATCAGCGGCACCGCGCCGTGCTTTTGACCCCGAGCCTGCATGCACCTC
GCAGCTCATGCGCTCGCGGACCCTGTTTTGCTCAAATCGCAGTTAG----TTTCTTTCGCTTTCTT--------------
---------------------GATTGTTCTTCTTCTTGCTCTGTGATCCGAGCAAGTGAGCTGTAGCTACCACTGGCACT
TTGACACCAACTGGTTGGATGAATCTTCAAGCATGCTATGCTTGCTTGGTGTTCTGAAGAAATACGCATGAGAATCTGTA
GACATTTCTTCTGGCCGGAGTAGTAAATTATTCTTGGATAATAGTACTGTACA--AGTCATGACATGGCACGACAAGAAT
GCGTGTGCACATTGCAATAAAATACTTCTCATGTGCGCTGAAACATA--TTCTTGGAGGCATCGTATGAGTATTTGAAAT
CCATTTGAAG--AATCAAAAGTCACACAAAAAGTTGGAAAGTTTCTCTGCAGTATCCTCTGAAATCCAAGTGATTACTTG
TTTTTTCCCTTCC----GAGAAATACTCAGCGGG---TTTTTTATTCTAACGAAAAGAGACATCAAACGGGCCACAGCCC
AGAAAGCCCGCCACATCTCCAAGCCCCAGATTTTCGGGCCCGGGAACCCCAACGGCCCCGGTTCTAGAGCCTTCCTCTCT
GCGACGCCGGAAATAAAAGGCGCCCGAAACTACTATACAGACGACAGTACTCCGGCCGAACACTGGACGATGTTGGATCG
AACGGTGTTGTTTAGTTTTGCTTTACACATGAGCGGCTTGATGTGCTACATCGTCTGCAAATCGTCCGCCGTTTGTCGTC
TGTGTAGCAGCGTTCAAAGGCGCCCCCCTTCCCCTCCCTTCCAGT-----CCACCCCACCACAACCCCCACTCGCCTCCG
CTCCTAGGGTTTCCCGCCGCGCACCACCCCCAAAACCCTCGCTCCCCA--CCTCCCCGGCGATCGGACCAATGGCGGC--
-------ATCGGCGGCGGCGAAGAAGCTCACGCTCAAGAGCTCCGACGGCGAGGACTTCGAGGTGGAGGTGGCGGTGGCG
ATGGCGT
>chr5B_24
-----------------------GTATTTGCTTTCGGAAAGATTCTCGCCTCAGTTCCACTAGAACCAGGAGGCTAAGAA
ATTTG-ATATTCTGTGTTATGATGTTCCAGTGCATTTGGTTACCGTATGAATGTAGGATGGACGCGCATTCGAACCTAAT
CTCGTGGTTAACCTAGCAATGACTACAGTCATCGACTCATTATGGGTAATCTTTGGTCTACCCAGCCGTATTATCCACAT
ACTACTAATCACAAGCAGCCTGGTTAGTGGTTATACTCTAGTGGTACTAGTAGTACAATCATCTGAGTGGTAGTAGTTTT
AAATTCTACGTACTCGTTTGTGCGGCA----TCGTTCTAGGTAGTACAGGT--------------------CCGACCCGA
TGAAGAAAAGGGTCATCATCGTGTCCGCCACGCGGACGGGACAAACGACGACGACGCACGAGCCTCAGGCGTGCGTCCCT
AGCCTCTCCTCTCCTCTCCTCTCGGTGACACAAAACAAAACAAAAAAGATGCCGCCTGGATGCTCGATTAGCCGCGAGTG
GTA-TATTATTTCGTCTCTGCAGATGCGATTAGCGAGCTAGTCATCACTGGATAAACACGCCTGCTAGCCATG------T
CTCTGTTGCCATGCCGGACTGTCACTGACGAGCAAAGTTTATTA---CTTACACATGACAGAGAATTTGCTGC-----AC
CGCGTCGAGCGGCAAAATTGACAAATTTGACCTATGGACGAAATCAAATCACATAATGAACTGCCCGTGAAACTATTTCA
CGCGGCTGACCTTTTTGTGTGACGCCAGACACGAAAGCGCCACACTACACTGTGCAACGCCTCACAAATAGGCGCTACAT
GCCTGATCAGCGTCGCATCTGTGTGATCCGAAAATTACTAAATCAGTGTGCAGCGCCTGAGAGTTAGGCGCCACACTATA
CAGTGTAGCGCCTGGCTTCTAGGCGTTGCACTAGTGGTTGCTTCATTTTGTAGTGCAACCACTAGTGCAGCGCCTGAGAG
CTAGGCGCCACACTATACAGTGCAGCGCCTAGCTCTTAGGCTCTGCACACTGACTTAGCAATTTTTAGGCAGTCTGGGGT
GCAACGCTGACCAGGCGTGTAGCGCCTATCTGTGAGCGTTGCACAATGTAGTGTGACGCCTTTGTATCGGGCGTCACACA
AAAAGGTCAGCCGTGTGAAATAGTTTCACGGGCAGTTCACTCTGTGATTTGATTTCGTCCGCAGGTCAAATTTATCAAAT
TTGCCGCGTCGAGCTGAGTGGCCCTGCAGA-------CTGCGGGTGGGAGAAATGTAGTAGTAATGCTTTGCCGCTGCCA
TGGTCGGAG----GGAGGGAATTTAATCCCCCGACAGCGCCTCGCACGGGCTGCGTGCTTTGCCCTGCTACCGGCGCGAC
AGGCACCCCT-------GCGGCCATCGATTGCTCTCACGAGCCCTTCCTTTTTACCGCCTGCCCTGGCCGCTAGCTCGCC
TCTATACATATAGCTCCACCACCCCGGCGCAAAGGCGAGCAAAAGCCGGCCGAGCAGAGGCAGCTAGGGCAAGAAAGCGT
CGTGCCGTGCGTGCCCAGAGCGCGAACCACCGGGGAGCAGAGAGA----GAGAGGCGGCAGGGTTGATGGCGGAGGTGGA
GAGGAAGGCCCCGCGGAGGGAGGAGGAGCTGGTGGAGGCGGCGCTGGCGGCGGCCGCGGCCGCGCTGTTCGTGTCCGGGG
TCAAGAGCCTGGCGCCGGCCGTGCTCGTCGACCGCTGGTGGTGGCCCCTGCCCGCGCAGGTGCTCGCCGCGGCGCCGTCG
CCCGTCCTGTTCCTCCTCCTCAACGTCCTCGTCGCCTGCATCGTCGTCGTCTCCGTGCAGCCGGCCAAGCGACCAGCCGC
GGCGGCGGCGACGGGCGCCGTCGCCGCGGAGGTGGCGCCGCCGGGAGACGGTGCGGCGAAGAAGCTGAAGAAGAGGCGGA
GCAGCAAGAGGCGCGGGGACGGCGCCGAACCGGCGGCTCT------CGCGCCGCCCTACGTCGCCGCCGACCGCTGCATG
GCGCTGGTGGTTGACCGCGGTGTCGTGATGGCGCCGACGGGCGGAGAGGAAGAAGAG---GAAGGAGCCGCCGGCGACGC
GGCGGAGGTGGACAGGCGCGCGGAGGAGTTCATCTCGGCGTTCCGGCACCGCCTCAGGGTCGACTCCTTCTCGTCTCGCC
GCGGGGAAGCCGGCGACGCGGCGGCGCGAGCCATCAGCGGCACTGCGCCGTGCTTTTGAC-CCGAGCCTGCATGCACCTC
GC-------GCGCTCGCGGACCCTGTTTTGTTCAAATCGCAGTCAG----TTTTTTTCGCTTTCTT--------------
---------------------GAT------------------------------------CTGTAGCTACTACTGGTACT
TTGACATCAACTGGTTGGATGAATCTTCAAGCATGCT-----TGCTTGGTCGTGTGAAGAAATACG--------------
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>chr5A_111
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-------------------------------GCATTTGGTTACCGTATGAATGTACGATGGACTCGCATTCGAACCTAAT
CGCGTGGTTAAACTAGCAGTGACTACAGTCATGGACTCATTATGGGGAATCTTTGGTCTACTCAGCCGTATTATCCACAC
AC---TAATCACAAGCAGCCTGGTTAGTGGTTACACCCTAGTGGTACTAGTAGTACAATCATCTGAGTGGTACTAGTTTT
AAATTTTG----CTAGTTTGGGCGGCA----TCCTTCTAGGTAGTATAT-----------------GCTCCCCGACCCGA
TGAAGAAAAGGGTCATCATCGTGTCCGCCACGCGGCCGGGAGAAACGACGACGACGCACGAGCCTCAGGCGTGCGCCCCT
AG----------CCTCTCCCCTCGATGACCCAAAACAAAAC-AAAAAGATGCCGCCTGGATGCTCGATTAGCTGCGAGCA
TGAGTATTATTTCGTCTCTGCAGATGTGATTAGCGAGCTAGTCATCAGTGGATAAACACGCCTGCTAGTGCCAGCCATTT
CTCTGTTGCCATGCCGGACTGTCACTGACGAGAAAAGTTTATTACTCCTTACACATGACACAGAATTTGCTGC-----AC
T-------------------------------------------------------------------------------
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-----GCGTCGAGCTGAGTGGCCCTGCAGCC---------------GGAGAAAT------GTCATGCTCTGCCGCTGCCA
TGGTCGGAG----GGAGGGAATTTAATCCCCCGACAGCGGCTCGCACGGGCTGCGTGC-TTGCCCTGCTGCCGGCGCGAC
AGGCACCCCCGCAGGCCGCAGCCATCGATTGCTCTCACGAGCCCTGCCCTTTTGGCGCCTGCCCTGGCTGCTCGCTCGGG
TCTATACATATAGCTCCACCACCCCGGCGCAAAGGCGAGCAAAAACCGCCCGAGCAG-------------AAGAAAGCGT
CGCGCCGTGCGTGCCTAGAGCGCAAACCACCGGGGAGCAGAGAGAAT-----AGGCGGCAGGATTGATGGCGGAGGTGGA
GAGGAAGGCGCCGCGGAGGGAGGAGGAGCTGGTGGAGGCGGCGCTGGCGGCCGCCGCGGCCGCGCTGTTCGTCTCCGGGG
TCAAGAGCCTGGCGCCGGCCGTGCTCGTGGACCGCTGGTGGTGGCCCCTGCCCGCGCAGGTGCTCGCCGCGGCGCCGTCG
CCCGTCCTCTTCCTGCTCCTCAACGTCCTCGTCGCCTGCATCGTCGTGGTGTCCCTGCAGCCCACCAAGCGACCCGCCGC
GGCGTCGGCAACGGGCGGCGTCGCCGCGGAGGTGGCGCCGGCGGGCGACGGCGCGGCGAAGAAGCTGAAGAAGAGGCGGA
GCAGCAAGAGGCGCGGGGCCGACGCCGAACCGGCGGCTCT------CGCGCCACCCTACGTCGCGGCCGACCGCTGCATG
GCGCTGGTGGTTGACCGCGGTGTCG---TGGCGCCGACGGGCGGAGAAGAAGAAGAG---GAAGGAGCCGCCGGCGACGC
GGCGGAGGTGGACAGGCGCGCGGAGGAGTTCATCTCGGCGTTCCGGCACCGCCTCAGGGTCGACTCCTTCTCGTCTCGCC
GCGGGGAGGCTGGCGACGCGGCGGCGCGAGCCATCAGCAGCACTGCGCCGTGCTTTTGAC-CCGAGCCAGCTGCGTGCAC
------------CTCGCGGACACTGTTTTGTTCAAATTGCAGTCAGCTTCTTTCTTTCGCTTTCTTCTCGTTCTTCTTGT
TGCTCTTTGATCTGAGCAAGTGAT------------------------------------CTGTAGCTACCACTAGCACG
TTGACATCAACTGGTTGGATGAATCTTCGAGCATGCT-----TGGCTGGTGCTCCGAAGAAATACGCATGCGAATCTGCA
GACATTTCTTCTTGGATAATACTTCCAATAAAATACTAGT--------------------------------ACAGGAAT
GCGTGTGCACATTCCAATAAG-------------GCACTGAAACATA--TTCTTGGAGGCATCGTATCAGTATTTGAAAT
CCATTTGAAG--AATCAAAAGTCACACAAAAAGTTGGAATGTTTCTCTGCAGTATCCTCTGAAACCCC-GTGATTGCCTT
TTTTTTTCTTCTTTCGAGAAACATACTCAGCGTTTTTTTTTTCATTTTAACGGAAAGAGACATCAAAAGGGCCACAGCCC
AGAAAGCCCGCCACATCTCCAAGGCCCAGGTTTTCGGGCCCAGGAACCCCAACGGCCCCGGTTCTAGAGCCTTCCTTTCT
GCGACGCCGGAAATAAAAGGCGCCCCCCTT--------------------------------------------------
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------------------------CCCCTTCCCCTCCATTCCACCCCACCCCACCCCACCACCACCCCCACTTGCCTCCG
CTCCTAGGGTTTCCCGCCGCGCACCACCCCCAAAACCCTCG--CCCCC--CCTCCCCGGCGATCGGACCAATGGCGGC--
-------ATCGGCGGCGGCGAAGAAGCTCACGCTCAAGAGCTCCGACGGCGAGGACTTCGAGGTGGAGGTGGCGGTGGCG
ATGGCGT
>chr5B_1887
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-------------------------------TCTAGGATAACAGTACGAGTCATGAGTCATGACATGGCACGACAAGAAT
GTGTGTGCACATTCCAATAAAATGCTACTCATGTGCACTGAAACATATATTCTTGGAGGCATCGTAGCAGTATTTGAAAT
CCATTTGAACACAATCAAAAGTCACACAAAAAGTTGGAAAGTTTCTCTGCAGTATCCTCTGAAATCCAAGTGATTACTTG
TTTTTTCCTTTTCAAGAGAGAAATGCTCAGCGGG--TTTTTTTATTTTAACGAAAAGAGACATCAAAAGGGCCACAGCCC
AGAAAGCCCGCTACATCTCCAAGGCCCAGAGTTTCGGGCCCGGGAACCCCAACGGCCCCGGTTCTAGAGCCTTCCTCTCT
GCGACGCCGGAAATAAAAGGCGCCTCCCTT--------------------------------------------------
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------------------------C----------------CATT-----CCACCCCACCACCACCCCCACTCGCCTCCG
CTCCTAGGGTTTCCCGCCGCGCACCACCACAAAAACCCTCG--CTCCCCACCTCCCCGGCGATCGGACCAATGGCGGCGG
ACGCGGCATCGGCGGCGGTGAAGAAGCTCACGCTCAAGAGCTCCGACGGCGAGGACTTCGAGGTGGAGGTGGCGGTGGCG
ATGGCGT
>SNPs
SSSSSSSSSSSSSSSSSSSSSSS-----------SS-----S--S--S----S---S----S------S-----------
----SS--S------------------------------------------------S---------------SS-----
-------------------------S------------------------------------------------------
-----------------------------------S----------SS--------------------------------
-S------------S------------SSSS----------------S-S-SSSSSSSSSSSSSSS--------------
------------------------------------------------------------------S-------------
------------------------------------------S-------------S----------------S------
---S-------------S-------------------------------S------------------------------
-------------------------------------------------------------------------SSSSS--
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---------S---S-----------------SSSSSS------S------------------------------------
---------SSSS-------------------------------------------------------------------
-----------------------------------------------------------------------S--------
-----------------S-------------------------------------------------S------------
---------------------------------------------SSSS-------------------------------
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------------------------------------------------------------------------S-S-----
------------------------S-------------------------------------------------------
----------------------S-------------S---SSSSSS----------------------------------
--------------------SS----------------------------------SSSS--------------------
---------------------------------S----------------------------------------------
-------------------------------------------S----------------S-------------------
--SSSSSSS---------------------S------------S------------------------------------
------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--------------------
------S------------------------------SSSSS---------S------------------S-------S-
------------S-SSSS-SSSS-SS-S--S---S------S-----SSSS-----------------------------
-------------S---------S--S---------S------------------------------S------------
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--------S--S----------------------------------S--------------------S------------
-----------------------S--------------------------------------------------------
-------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSS-------------S-----S------------------S-----------------
-----------------------------------------SS----S--------------------------------
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>forward_715
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-------------------------------------------------------TGACAGAGAATTTGCTGCGC-----
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>reverse_3066
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-------------------------CACATGAGCGGCTTGATGTG-----------------------------------
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