>input_sequence_73422
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-------------------------------------------------------------------ATGTCTGATCTTG
ACGTTCAGATCCCAACTGCCTTTGGTATGCCTGTTGTTTTCCATCCCAATTATCATTGAAATTGCTTGCATTGTTTGGAG
TGTCCTGCTTATTTATTTTGCTTCTACATACAGACCCCTTTGCCGAGGCGAATGCTGGGGACGCTGGTGCAGCTGCCGGA
TCAAAAGACTACGTTCATGTACGCATCCAGCAGCGTAATGGTCGCAAGAGCCTGACCACTGTCCAGGGTCTGAAGAAGGA
GTTCAGCTACAGCAAGATCCTCAAAGACCTCAAGAAAGAGTTTTGCTGCAATGGTACAGTTGTCCAGGACACAGAACTTG
GACAGGTGTGTTGAAACAACAAGCAAACTCG---TCCTTTATCATGTCCATTTGTTTCGCAATTTTCTCATGCAAGCTAG
TTGTCCTGATCATTGCTGCTCTTTTCCACTCCAGGTCATTCAACTCCAGGGTGATCAGAGGAAGAACGTCTCAAACTTCC
TTGTCCAGGTAAACATCTTTCTCTTCATCTTATGCTCGGTATGGTTGCAGTTCACAAACATGGATGAAGATGTCTAATAT
GATATGTGTCTGACGCAGGCCGGCATTGTGAAGAAGGAACACATCAAGATTCATGGTTTCTGA-----------------
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>chr2B_1_TraesCS2B01G244400
CCAGGGTATGC--CCCTGCTC--TGATTCTTGGTTGATCTCTATGGTCTGTTGTTG-------------TTATGTATTAG
GGTCCCCTTCTATGGAGAGGATCTGTATGATAATGGATTCATCTTGACTTGCGATCCTGTTCGTCTTCCATGGTTCTTTC
TGAGGCCGTT--TAGGGTCGATCCGTGTAGGTATTCTTGGATCTCATTCTCTTTGGACCCGTATTGATAAGGTCGTCTGT
TCTTATATGTACTGTACAATCGGGTATTGATTGCGATATCTATGATACACTTTTT---AAAGAAGGTTAGGGATTCCAAT
CCTGATGCTATTTTTCTGTACAAACATAGTATGATTAGCTCTATACATCTATTTTCATTTCGAAGAAAAAAAAACTTTTT
GAGCGAAGGGGATAAATTTGTCAGGACAACAAAATTATGTTTGAGACCAGCACTGCACTTGCCTGTACATATTAAGACAT
GC----TGTGATCTTGAAGTTGAAAGAAAACCTCTTTTTAGGAAATTCCAGTCCGGACTCCGGACTACCTAAGAAAATTT
GAAGAAAACAACAATCATAAAGGATGATAAAAATCACATGTATAAACATTAAACAAACTGTAAAGAATGGTAGAAGACAT
CAA-GCTCGCCGCACGAATCGTGCAGGTTGCTCCACTAGTTTTGTGAAATAGTTCCTCCATAATCATTTAGGTCCAATTG
GAACAGTGATGATTGCTTGTGGTGTAAGTGTGTTGTCATCAGTTTGGCTTTGACTGTTGTTCCTTGGTTTCGGTATAGAA
ATACCTCTCTGATATCTTGATTTTATCTTTCTTTAATTTAACTGTATGAAATAAGTACCTCTGATGCAAATTATTTAGTC
AGTGGTCAAAGCCATGGCCTGCTTGGTTGTACAAATGAGAAATTTCGAAGCTGTCATTCACCTCTCTATACTGCATGCCC
TAATGATTCATTTTCTTACTGTGTACAGTTCTTGGTGCAGCTTTTGCCAGTCTCAGCAGGAGATTTCATGTCTGATCTTG
ACGTTCAGATCCCAACTGCCTTTGGTATGCCTGTTGTTTTCCATCCCAATTATCATTGAAATTGCTTGCATTGTTTGGAG
TGTCCTGCTTATTTATTTTGCTTCTACATACAGACCCCTTTGCCGAGGCGAATGCTGGGGACGCTGGTGCAGCTGCCGGA
TCAAAAGACTACGTTCATGTACGCATCCAGCAGCGTAATGGTCGCAAGAGCCTGACCACTGTCCAGGGTCTGAAGAAGGA
GTTCAGCTACAGCAAGATCCTCAAAGACCTCAAGAAAGAGTTTTGCTGCAATGGTACAGTTGTCCAGGACACAGAACTTG
GACAGGTGTGTTGAAACAACAAGCAAACTCG---TCCTTTATCATGTCCATTTGTTTCGCAATTTTCTCATGCAAGCTAG
TTGTCCTGATCATTGCTGCTCTTTTCCACTCCAGGTCATTCAACTCCAGGGTGATCAGAGGAAGAACGTCTCAAACTTCC
TTGTCCAGGTAAACATCTTTCTCTTCATCTTATGCTCGGTATGGTTGCAGTTCACAAACATGGATGAAGATGTCTAATAT
GATATGTGTCTGACGCAGGCCGGCATTGTGAAGAAGGAACACATCAAGATTCATGGTTTCTGAGCAACTGCCAGCTCCAT
ATCAGAGTCTACATGCAAAGCAGCTATATATTGGTGGTGCAGTATATTTAGTTGTGTGCTAGCGCTAGCAGGCGTTACCA
GCTTGCGCGCTCTGAGTATACAGAAAATCTAGCATAGCCCACCTCTCTGCGTGTATGCTTGTTACCGTTGTGTTGAAACT
TTGTAAGGAGCACCATCTTTAGATGGCTTGTTACCCTCTCCCATCAAGGTTGAATAAT---ATATGCTTTGTTAAGCGTG
GTATCCTTCGTATCATCCATTTTGGTTTGACATTCGCTGTTCCAGCCGGTGTCGATACATCTAGTTTTGAACCGTATCTG
C------TTGATGACTGAATTAAGTTGCCTGCTTGACATGCACCAATTCTTCTGGACCCAGTTGCACTTGGTTCTTCTGG
GTCTACTGAAT----ACTGTAGCCTCATTAATGGCAATTTACGACCGCAGCTGAAACCAGTGCCTGGTGCAGTGGTGCTG
CGGCTACTCCAAGCTGCGAATGGCTTGGATCTCATTACTGTTTGA-GGCACGGTTTAGCTTTATTCTG--CACTGTGCTG
CTCTCTAAAAACAGGGAAGCGCTTCCTATCTTACGTCAGACCACTCATTGACCGTTGATGCACTTTTGATCC-ACGGAGG
GCATCAACATTTT---------TGGATAGCTGGTCCAGCAAGGCATGTTTTGCAGGGACTGCCGGACCGAGATATTTTTG
TGATCAGACATCTACTCCCTCTGTTCGGAATTACTTGTCGCAAAAATGAATGTATCTAGACGTAATTTAGTTCTAGATAC
ATCCATTTTCGAGACAAGTAATTCCGAACGGAGGGAGTAAAACTATAAACATCGGTCTCGTTTTGGTTGTGATCGGTTGC
TACAGGGTGATATGCATTTGAATTTCATATTGGTCTGACCTCGACGAC-------GGGATGTGATTGGATGACCGGCTCC
CGTATCACTGTCCGGACAGATACCGTGTTCGTTTTGGAAGTCAACGTTGGAAGAAG
>chr2A_1
CCAGGGTATGC--CCCTTCTCCCTGATTCTTGGTTCATCTCTATGTTCTGTTGTTGATCTGCAGTTAG-TTCTGTATTAG
GATCCCCTTCTATGGAAAGAATCCGTATGATTATGGATTCATCTTGACTTGCGATCCTGTTAGTCTTCCGTGGTTATTTC
TTAGGTCGTTTATAGGGTCGTGCCGTGTAGGTATTCTTGGATCTCGTTCTCTTTCGACCCGTATTGATATGGTCGTGTCT
TATATA--------TACAATCGGGTATAGATTTTGATATCTACGGTGTTTTTTTT---GAAGAAGATTAGGGATTCCAAT
CCTGATGCTATTTTTCTGTACAAACATGGTATGATTAGCTTCATACGTGTATTTTCATTTCGAAGAAAAGT-AACTTTTT
GAGTGAAGGGGATAAATTTGTCAGGACAACAAAAGTATGTTA-AGACTAGCACTGCACTTGCTTGTACATATTAAGATAT
GCTATTTGTGATCTTGAAGTTGAAAGAAAACATTCTTTAGGAAAAACTCC------ACTCCGGACTACCTAAGAAAAATT
GAAGAAAACAACGAGCATAAAGGATGATAAAAATCACATGTA-------TAAACAAACTGTAAAGAATGGTAGAAGACAT
CAAAGCTCGCCACACGAATCGTGCAGGTTGCTCCACTAGTTTTGTGAAATGGTTCTTCCATAATCATTTAGGTCCAATTA
GAACAGTGATGATTGCTTGTGGTGTAAGTGTGTTGTCATCAGTTTGGCTTTGACTGTTGTTCCTTGGTTTTGGTATAGAA
ATACCTCACTGATTTGTTGATTTTATCTTTCTTTAATTTAGCTGTATGAAATAAGCACCGCTGATGCAAATTATTTAGTC
AGTGGTCAAAGCCATGGCCGGCTTGGTTGTACAAATGAGAAATTACGAAGCTGTCATTCACCTCTCTAGACTGCATGCCC
TAATGATTCATTTTCTTACTGTGCACAGTTCTTGGTGTAGCTTTTGCCACTCTCACCAGGAGATTTCATGTCTGATCTTG
ACGTTCAGATCCCAACTGCCTTTGGTATGCCTGTGGTTTTCCATCCAAATTATCATTGAAATTGCTTGCACTGTTTGGAA
TGTCTTGCTTAATTGTTTTGCTGCTACATACAGACCCCTTTGCCGAGGCGAATGCTGGGGACGCTGGTGCAGCTGCCGGA
TCAAAAGACTACGTTCATGTACGCATCCAGCAGCGTAATGGTCGCAAGAGCCTGACCACTGTCCAGGGTCTGAAGAAGGA
GTTCAGCTACAGCAAGATCCTCAAAGACCTCAAGAAAGAGTTTTGCTGCAATGGTACAGTTGTCCAGGACACAGAACTTG
GACAGGTGTGTTGAAACGACAAGCAAACTCGTTATCCCTTGTC----CCATTTGTTTCGCAATTTTCTCATGCAAGCTAG
TTGTCTTGATCATTGCTGCTCTTTTCCACTCCAGGTCATTCAACTCCAGGGTGATCAGAGGAAGAACGTCTCAAACTTCC
TTGTCCAGGTAAACATCTTTCTCTTCATCTTATGCTCGGTACGGTTGCAGTTCACAAACATGGATCAAGATGTCTAATAT
GATATGTGTC-GACGCAGGCCGGCATTGTGAAGAAGGAACACATCAAGATTCATGGTTTCTGAGCAACTGCCAGCTCCAT
ATCAGAGTCTACATGCAAAGCAGCTATATATTGGTGGTGCGGTATATTTAGTTGTGTGCTAGCGCTAGCAGGCGTCACCA
GCTTGCGCGCTCCGAGTATACAGAAAATCTAGCATAGCCCACCTCTCTGCGTGTATGCTTGTTACCGTTGTGTTGAAACT
TTGTAAGGAGCACCATCGTTAGATGGCTTGTTACCCTCTCCCATCAAGGTTGGATAATAATATATGCTTTCTGAAGCGTG
GTATCCTTCGTATCATCCATTTTGGTTTGACATTCGCCATCCCAGCCGGTGTCGATACATCTAGTCTTGAACTGTATCTG
CATCTGCTTGATGACTGAATTATGCTGCCTGCTTGACATGCACCA--TATTCTGGGCCCGGTTGCACTTGGCTCTTCTGG
GTCTACTGAATACTCACTGTAGCCTCATTCATGGCAATTTACGACCGCAGCTGAAACCAGTGCCTGGTGCTGCT------
--GCTACTCCAAGCTGCGAATGGCTTGGATCTCATTACTGTTTGAGGGTACAGTTTAGCTTTATTCTGCACACTGTGCAG
CTCTCTAAAAACAGGGAAACGCTTCCTATCTTACGTCAGACAGCTCATTGACCGTTGATGCACTTTTGATCCCACGGAGG
GCATCGACATTTTCGGATAGCTTGGATAGCTGGTCCGTCAAGGCATGTTTTGCACGGACTGCCGGACCGAGATACTTTTG
TGATCAGACATC--------------------------------------------------------------------
-------------------------------------TAAAACTATAAACATCGGTCTCGTTTTGGTTGTGATCGGCTGC
TATAGGGTGATATGCATTTGAATTTCATATTGGTCTGACCTGGACGAACATTTAGTGGATGCGATTGGATGACCGACTCT
CACATCACTGTCTGAACAGATACTGTGTTCGTTTTGGAAGTCAGCGTTGGAAGAAG
>chr2D_1
CCAGGGTATGCTCCCCTGCTC--TGATTCTTGGTTGATCTCTATGGTCTGTTGTTGATCTGCAGTTAAGTTATGTATTAG
GGCCCCCTTCTAGGGAGAGGATCTGTATGATTATGGAT-------------CGATCCTGTTCGTCTTCCGTGGTTCTTTC
TTAAGCCGTTT--AGGGTCGAGCCGTGTAGGTATTCTTGGATCTCGTTCTCTTTCGACCCCTATTGATAAGGTTGTCTGT
TCTTATATATACTGTACAATCGGGTATTGATTGTGATATCTACGATGCTTTTTTTTAAGAAGAAGATTAGGGATTCCACT
G------------TTCTGTACAAACATAGTATGATTAGCTCCATACATGTATTTTCATTTCGTAGAAAAAA-AACTTTCT
GAGCGAAGGGGATAAATTTGTCAGGACAACAAAATTATGTTA-AGACTAGCACTGCACTTGCTTGTACATATTAAGATAT
GCTATTTGTGATCTTGAAGTTGAAAGAAAACTTTTTTTAGGAAAAACTCC------AGTCCGGACTACCTAAGAAAAATT
GAAGAAAACAGTGATCATAAAGGATGATCAAAATCACATGTA-------TAAACAAACTGTAAAGAATGGTAGAAGACAT
CAAAGCTCGCCGCACGAATCGTGCAGGTTGCTCCACTAGTTTTGTGAAATAGTTCTTCCATAATCATTTAGGCCCAATTA
GAACAGTGATGATTGCTTGTGGTGTAAGTGTGTTGTCATAAGTTTGGCTTTGACTGTTGTTCCTTGGTTTTGGTATAGAA
ATTGCTCGCTGATTTGTTGATTCTATCTTTCTTTAATTTAGCTGTATGAAATAAGCACCTCTGATGCAAATTATTTAGTC
AGTGGTCAAAGCCATGGCATGCTTGGTTGTACAAATGAGAAATTACGAAGCTGTCATTGACCTCTCTATACTGCATGCCC
TAATGATTCATTTTCTTACTGTGTACAGTTCTTGGTGTAGCTTTTGCCACTCTCACCAGGAGATTTCATGTCTGATCTTG
ACGTTCAGATCCCAACTGCCTTTGGTATGCCTGTGGTTTTCCATCCAAATTATCACTGAAATTGCTTGCACTGTTTGGAA
TGTCTTGCTTAATTGTTTTGCTGCTACATAAAGACCCCTTTGCCGAGGCGAATGCTGGGGACGCTGGTGCAGCTGCCGGA
TCAAAAGACTACGTTCATGTACGCATCCAGCAGCGTAATGGTCGCAAGAGCCTGACCACTGTCCAGGGCCTGAAGAAGGA
GTTCAGCTACAGCAAGATCCTCAAAGACCTCAAGAAAGAGTTTTGCTGCAATGGTACAGTTGTCCAGGACACAGAACTTG
GACAGGTGTGTTGAAACAACGAGCAAACTCGTCATCCCTTATCATGTTCATTTCTTTCGCAATTTTCTCATGCAAGCTAG
TTGTCTTGATCATTGTTGCTCTTTTCCATTCCAGGTCATTCAACTCCAGGGTGATCAGAGGAAGAACGTCTCAAACTTCC
TTGTCCAGGTAAACATCT--CTCTTCATCTTATGCTCGGTATGGTTGCAGTTCACAAACATGGATGAAGATGTCTAATAT
GA--TGTGTC-GACACAGGCCGGCATTGTGAAGAAGGAACACATCAAGATTCATGGTTTCTGAACAACTGCCAGCTCCAT
ATCAGAGTCTACATGCAAAGCAGCTATATATTGGTGGTGCAGTATATTTAGTTGTGTGCTAGCGCAAGCAGGCGTTACCA
GCTTGCGCGCTCTGAGTATACGGAAAATCTAGCATAGCCCACCTCTCTGCGTGTATGCTTGTTACCCTTGTGTTGAAACT
TTGTAAGGAGCACCATCGTTAGATGGCTTGTTACCCTCTCCCATCAAGGTTGAATAATAATATATGCTTTCTTAAATGTG
GTGTCCTTCGTATCATCCATTTTGGTTTGACATTCGCCATTCCAGCCGGTGTCGATACATCTAGTCTTGAACTGTGTCTG
C------TTGATCACTGAATTAAACTGCCTGCTTGGCATGCACCAATTATTCTGGGCCCGGTTGCACTTGGTTCTTCTGG
GTCTACTGAAT----ACTGTAGCCTCATTCATGGCAACAGTGCC----------------------------TGGTGCTG
CGGCTACTCCAAGCTGCGAATGGCTTGGATCTCATTACTGTTTGAGG-TACGGTTTAGCTTTATTCTGCACACTGTGCGG
CTCTCTACAAACAGGGAAACGCTTCCCATCTTACGTCAGACCCCTCATTGACCGTTGATGCACTTTTGATCC-ACGGAGG
GCATCTACATTTT---------TGGATAGCTGGTCCAGCAAGGCATGTCTTGCAGGGACTGTTTTGG----------TTG
TGATCAGACAT---------------------------------------------------------------------
-------------------------------------TAAAACTATAAACATCGGTCTCGTTTTGGTTGTGATCGGCTGC
TATAGGGTGATATGCATTTGAATTTCATATTGGTCTGACCTGGACGAACGTTTAGGGGATGCGATTGGATGACCGGCTCC
TGCATCACTGCCCGGACAGATACCGTGTTCGTTTTGGAAGTCAGCGTTTGAAGAAG
>SNPs
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-------------------------------S-------------------------------------S----------
-S-------------------S-----------------------S--------S-------------------------
--------S------------------------S--------S---S-SS--------S------S--------------
-----------------------------------------S------S----------------------S--------
-----------------------------------------SS----S--------------S--------------S--
-------------------------------S-S----SS-S---SSS-SSSSSSS---------------------S--
------------S-----------------------------SSSSSSS-------------------------------
-------------------------------------------------------S-----------------------S
----------------------------------------------------------------------S---------
-------S-----S-S------------------------S--------------S------------------------
--------------------------------------------S-----------------------------------
-------------------------------------S-----------S-----S------------------------
----------------------------------S-----------S-----------------------S--------S
----S------S--S-------S---------------------------------------------------------
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-------------------------------------S------------------------------------------
-----S--------------------------------------------------------------------------
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----------S---------------------------------------------------------------------
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-----------------S----------------------------------------------------S---------
-------------------------------------SS--------------------------S------S-------
------------------------S-----------------------S------S---S--------------------
-----------------------------S----------------------------------------S---------
------------------------------------------------S-----------------------------S-
------------------S-----------------------S-------------------------------------
-----S--------------------------------------------------------------------S-----
------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---------------------------------------S---
--S--------------------------------------S-----S-------------S------------------
--S----------------------------------------S------------
>forward_150
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--------------------------------------------------GCGATCCTGTTCGTCTTCCA----------
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>reverse_1959
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--------------------------------------GTTCCAGCCGGTGTCGATAC----------------------
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