>input_sequence_73421
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-------------------------------------------GCCTACATAGCCGCCCCGCCACTCTCCTGGCGACGTG
ACGCCCCACGCAGCCCGCCGCCCCGTCTCTGC-TCTTGTTTCC----ACGTATAGGCCGGAGTTCGGAGCGATCGCCATG
GGGCTTCAACTCGAGGAGTGCCGCGGCGACGACGACGACGCGCGCCGCGACAGAGGCGAGAAGGAGGAGCCCGCAGCAGC
AGGGTACCGGACCCCGAGGCGCGCCGCGCGGGACACCGGAGCGGGGACGGTCGGGGCGTGCCCGCCCGCGCCGAGGAAGC
GGATGACCACGGTGGCGGCGGCGC------CGTCGGTCGTCGCACGGCGGAGGGAGTTCTACGCCGGGGCCGACCTGGAG
GCCTTCTTTGCAGCACACGACCTCTAGAGAAATCTCACTC---GAGTTCACTGGACGCAGCAGTACTGTTGTTTACACCA
TTTGGTCTGAAAGGCCACTGGAGCGCGCCGATGTATATACAGT------CTATCATGTATAGCTAGCTGTTTATTTAGTA
G--------------CATGTGGTACCGAGTTCTTGTGTTCAGCCGAATGCCACAAATGCTGGGATCGTTCGTACGTTTTC
TTCATTTGTGTGAAGTTTAATTACTC---TAGTACGTTACTTATTTGGTCTGGAATAAGG---------TATATGGTTAG
CT------------------------------------------------------------------------------
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>chr2B_1_TraesCS2B01G177700
GTACGAGAGCCGTTGGGACCGAGCTGGAACTTTTTGAGGTTGTACGTCAAATATTGATGTGTGTCTATAATATTTTTGAG
AATGTTTGAACATGTATTTAAAAAAATCGATCTCATTGATCTCACCTAATGTGAGATCTCACATAAGTCTTCCCTTAATT
TTGACGTAAATAGCAGGAGCTCTGCCTTTGCATTATAGTAGGAAGAAAGAAATACAAGACGGATGACCCATCGGAGAAGA
TTCGGGTTCAATACTCATACATCAGTCCGAGGAAGAAGAGAGAAATAATACAACAGTACATGAAAATCCCAGTGCTCAGT
CCCTCGTGGCCTCACTAAAGCACCTGACATCCTCTCGAATTAGCCCCGTCAAAGCAATGGCTGATAACTCTTTTTGCTCG
AAAATTCTTCTGTTCCGCTCCTTTCACAAGTTCCACAGTATGTATGCCGCCAATGTGATCTCCTCCTTGATTGCCTTTTT
TGGTCGGTTGGCAGAGCATAATCTGTCCCAGCATTCACCAATGGACTGTGCCGCGGCAGCGGCATCACACAGCGCAACAT
TGAACTGCCGGAGAGGAGAGACATGGTAGCTTGCATCTTTTTAATGCATTTTTACTCTACTTCATAATCTGTCCTAAAAT
TTCTATGTGTACGAGGGAGTAGACAGCAGTAAAACAAAGTCCACTCAAAAAATAAGCAATAAATAAAAAAAC--AAATGG
AACGTTACCAACGCAACCAGACGGACCAGGAAATCAAAGTGCTTTATGGTGGAAATCGAGCGTTACTGAACTCATCAATC
GTAGCATAAATTCGCCGTGCCACACCGTACCGCTTTCCGGCGTCGATCTTCTTCCAAGGAGCACACAAGCATACCGCCCC
CTGCAGCCCGCAACGCGCGCGCCGCCCGGTCAACCTCGGCGACCGCTCCGCGCTCCCCCACGTTCTCCCTCCC-TCCCCA
CTACTCCCACTACGCCAGCCTGCACCTGACGCCCCAGCCTTTCGCCTACATAGCCGCCCCGCCACTCTCCTGGCGACGTG
ACGCCCCACGCAGCCCGCCGCCCCGTCTCTGC-TCTTGTTTCC----ACGTATAGGCCGGAGTTCGGAGCGATCGCCATG
GGGCTTCAACTCGAGGAGTGCCGCGGCGACGACGACGACGCGCGCCGCGACAGAGGCGAGAAGGAGGAGCCCGCAGCAGC
AGGGTACCGGACCCCGAGGCGCGCCGCGCGGGACACCGGAGCGGGGACGGTCGGGGCGTGCCCGCCCGCGCCGAGGAAGC
GGATGACCACGGTGGCGGCGGCGC------CGTCGGTCGTCGCACGGCGGAGGGAGTTCTACGCCGGGGCCGACCTGGAG
GCCTTCTTTGCAGCACACGACCTCTAGAGAAATCTCACTC---GAGTTCACTGGACGCAGCAGTACTGTTGTTTACACCA
TTTGGTCTGAAAGGCCACTGGAGCGCGCCGATGTATATACAGT------CTATCATGTATAGCTAGCTGTTTATTTAGTA
G--------------CATGTGGTACCGAGTTCTTGTGTTCAGCCGAATGCCACAAATGCTGGGATCGTTCGTACGTTTTC
TTCATTTGTGTGAAGTTTAATTACTC---TAGTACGTTACTTATTTGGTCTGGAATAAGG---------TATATGGTTAG
CTGTGTTAGTACTGTTGTTTACACCATTTGGTCTGAAAGGCCACTGGAGCGCGCGGATGTATAGATTGATAGTCTGGCCG
GGTTGCATGATTGATTTTTCTTTTGAGGGGAGCATGATTGATTTGTTGATTTTGAATCTTTGATCTGCCTCGTCGTACTT
GG-TTTTTCTCGAGACCTCCTAGTTGACCCCAGTAGGAAGACCTTCTATACTTCGCTTCACGCGCCGCTTTGTCTTTAAA
TATAGCGCCGGAAGCCGCTGGTATAGGCCGGCTCATCTAAATCCCTCGCTACAGTTTCCTCTCCTACTAGTACTAGTAGA
ATGCCCGGGCGTTGCCACGGGTTTTAAAAATATTTTGCTGAAATTGTATAAACATAATGCATATTAAATTTCACATGTAG
AGAAA-AAATAGCATATGCATAATTGGGTAATAATTGAAATCCACTTGGCTTGCAATGTAAATTGCTAAAAAAAAAG---
--------------------GTAATTTGACGATGTAACCATATAGAGTGATTGATGATCCAACTAAAATGTTACAAATTA
AGATCTACTTGATGCGTTTAATAAACTGTCGCATAATATCAGAAATGTTGTTTTTAGCTCCATTCACAAATATTTGAGCA
GGTATAATAGAAACTCCTTCAACAACTCATACTCATTCTACACAAGCAATATACGTAATTAGTACGAATACTTCAAGTCA
AAGATTTTTTTAAGAGATATCAACGCTTGCATATCATTATGTTTATATAAACTCGATGAATTTATGACCCCTTTCAGCGA
CGTCCCCTTGAAATCCTTGTCGATGGTTTCTTTTTGAACATCGCC-AAATCGATCTCTCTCTCTATATATATATATATAT
ATATATTTTGAAAAAATAATCATATGAAAATACACCCTTTTTGTTATCATGTATAATAATTATACAAAGAAGGATTAGTT
GTGTGCATC-CTTCTCGTGGTGTTTCAGTCTAGTATATCATCGCTACGTCAGTGCATATTTCAGTTAAT
>chr2D_695
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------------------------------------------------------AGCAATAAATAAAAAAATTAAAATGG
AACGTTACCAAAGCAACCAAACGGACCAGGAAATCAAAGTGCTTTATGGTGGAA-TCGAGCGTTACTGAACTCATCAATC
GTAGCATAAATTCGCCGTGCCACACCGTACCGCTTTCCGGCGTCGATCTTCTTCCAAGGAGCACACAAGCATACCGCACC
CTGCAGCCCGCAACGCGCGCGCCGCCCGGTCAACCTCGGCGACCGCTCCGCGCTCCCCCACGTTCTCCCTCCC-TCCCCA
CTACTCCCACTACGCCAGCCTGCACCTGACGCCCCAGCCTTTCGCCTACATAGCCGCCCTGCCACTCTCCTGGCGACGTG
-----------------CCGCCCCGTCTCTGCTTCTTGTTTCC----ACGTA------GGAGTTCGGAGCGATCGCCATG
GGGCTTCAACTCGAGGAGTACCGCGGCGACG---ACGACGCGCGCCGGGACGGAGGCGAGAAGGAGGAGCCCGCAGCAGC
AGGGTACCGGACCCCAAGGCGCGCCGCGCGGGACATTGGGGCGGGGACGGTCGGGGCGTGCCCGCCCGCGCCGAGGAAGC
GGAGGACGACGGTGGCGGCGGCGC------CGTCGGTCGTCGCGCGGCGGAGGGAGTTCTACGCCGGGGCCGACCTGGAG
GCCTTCTTTGCAGCACACGACCTCTAGAGAAATCTCACTTATAGAGTTCACTGGATGCAGCAGAGTTCGTGGTGCTCTTG
CTGCAATGCATA-------------CGCTGGT---------GTAAATCCCTATCATGTATAGCTAGCTGTTTATTTAGTA
G-----TACGTCTAGCATATGGTTTTGAGTTCTTGTGTTTAGCCGAATGCCACAATGCTAA-GATCGTTCGTACGTTTTC
TTCATTTGTGTGCAGTTTAATTACTCTAGTACTACGTTTGTTATTTTGTCTGAAATCAGATCATCTGTATATATGGTTAG
CTGTGGCAGTACTGTTTTTGACATCATTTGGTCTGAAAGCCCACTCGAGCGCGTGGAT----------------------
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>chr2A_705
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----------------------------------------------------------------AAAAAAACTGAAATGA
AACGTTAACAAAGCAACCAGACAGACCAGGAAATCAAAGTGCTTTATGGTGGAA-TCGAGCGTTACTGAACTCATCAATT
GTAGCATAAATTCGCCGTGCCACACCGTACCG--------------TCTTCTTCGAAGGAGCAGACGAACAATATCGTCC
CTA-------CAACGCGCGCGCCGCCCGGTCAACCTCGGCGACCGCTCCGCGCTCCCCCACGTTCTCCCTCCCCTCCCCA
CTACTCCCACTACGCCAGACTGCACCTGACGCCCCAGCCTTTCGCCTACATAGCCGCCCCGCCACTCTCCTGGCGACGTG
-----------------CCGCCCCGTCTCTGCTTCTTGTTTCCACGTACGTA------GGAGTTCGGAGCGATCGCCATG
GGGCTTCAACTCGAGGAGTACCGCGGCGACGGCGACGACGCGCGCCGCGACGGAGGCGAGAAGGAGGAGCCCGCAGCGGC
GGGGTACCGGACCCCGAGGCGCGCCGCGCGGGACACCGGGGCGGGGACGGTCGGGGCGTGCCCGCCGGCGCCGAGGAAGC
GGAGGACCACGGTGTCGGCGGCGGCGCCTTCGTCGGTCGTCGCGCGGCGGAGGGAGTTCTACGCCGGGGCCGACCTGGAG
GCCTTCTTTGCAGCACACGACCTCTAGAGAAATCTCGCTC---GAGATCACTGGATGCAGCAGAGTACGTGGTGCTCTTG
CTGCAATGCATA-------------CGCCGATGTATATACAGTATATCACTATCATGTATAGCTAGCTGTTTATTTAGTA
CTGTACTACGTCTGGCATGTGGCTCTGAGTTCTTGTGTTTAGCCGAATGCCACAAATGCTTGGATCATTCGTACGTTTTC
TTCATCTGTGTGCAGTTA------------AGTACGTTACTTATTTAGTCTGGAATCAGATTATCTGTG--TATGGTCAG
CTGTGGCAGTACTGTTTTTGACATCATTTGGTCTGAAAGCCCACTCGAGCGCGCGGATATATAGATTCAGAGTCTGGCCG
GGTTGCATAACCCCATGATCT-------------------ATTTGTTGATTTTGAATCATTGATCTGCCCCGTAGTACTT
GATTTTTTCTCGAGACCTCTTAGTTGAC----------------------------------------------------
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>chr3B_1937
CTATA---------------------------------------------------------------------------
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------------------------------------------------------------------------CTAGTAGA
ATGCCCGTGCGTTGCCACGGGCTTTAAAAATATTTTGCTAAAGTTGTATAAACACAGTGGATGTTAAATTTCACATGTAG
AGAAAGAAATAGCATCTGCATAATCGGGTAATAATTGAAATCCACTTCGCTTGCAATGTAAATTGCTAAAAAAAAGTACT
TTGATCACCCGCAAAAAAAAGTACTTTGATGATGCAACCATATAGAGC----GATGATCCAACTAAAACGTTACAAATTA
AGATGTACGTGATGCATTTAAGAAATTCTCGCACAATATTAGAAATGTTGTTTTTAGCTACATTCACAGATATTTGAGCA
AGTATAATAGAAACTCCTTCCACAACTCATACTCATTCAACACAAGCAATATATGTAGTTAGTACGAATACTTAAAGTCG
AAGATTTTTTTAAGAGATATCAACGCTTGCATATCATTATGTTTTAAAAACCTCGATGAATTTATGAACCCTTCCAGTGA
CGTCGCCTTGAAACCCTTGTCGATGGTTTCTTTTTGAACATCGCCAAAATCCATCTCTATCTCTCTC-------------
--ATATTTTGAAAAAAAAATCATATGAAAATACACCCCTTTTGTTATCATGTATAATAATGAAACAAAGAAGGATTAGTT
GTGTGCATCTCTTCTCGTGCTGTTTCAGTC---------------------------------------
>SNPs
S--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--------------------------
-----------S------------------------------------------S-------------------------
-----------------------------------------------------------------------------S--
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SSSSSSSSSSSSSSSSS-----------------------------------SSSSSS----------------------
-------------------S-----------S-------------------S----------------------------
---------------------------------------S----------------------------------------
---S---------------------------------------S------------------------------------
-------------------------------------------------------S-------SSS-SS--S-SSSSSSS
S-SSSSSSS-S-SSSSSSSSSSSSS-------------------------------------------------------
-----------------------S-S-------------S--------------------S-------------------
------------S---------------------------------S---------S--S--------------------
-----SS---------S--S---S---------------S-----S------------S--------S-S----------
--------S-SSSSS-SS---SSSSSSSSSSSSSSSSSSS------------------S----------S---S------
-S-----------------S--------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--------
-------S-------------S-----------------S--S-----------S-S--S--S-----------------
---------------S--------S----------------------S---------------------------SS---
-----------------------S-----S----S------------SSSSS----------------S-----------
----S---S------S-----S---S-S-----S-----S-------------------S--------S-----------
S-------------------S-----------------S--------------S---S---------------S-----S
--------------------------------------------SS-S--S----------------S-----S---S--
----S--------S-------------------------------------S------S-----S-SSSSSSSSSSSSSS
SS--------------S--------------------S----------------------S-S-----------------
-------------------S----------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_370
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------------------------------CCTCTCGAATTAGCCCCGTC------------------------------
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>reverse_1460
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-------------------GGAGCGCGCCGATGTATATA-----------------------------------------
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>forward_576
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----------------------------------------------------------------------------ACAT
TGAACTGCCGGAGAGG----------------------------------------------------------------
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>reverse_1939
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------------------TGGTATAGGCCGGCTCATCT------------------------------------------
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