>input_sequence_73414
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--------------------------------------------ATGGCGTCCTCGTCCATGATCACCTTCGCAGCCGCC
TTGTGCCTTGTGGCCGCTTCCGCCGTCGCCGTTCCGCCGGCCACCCTCCAGGAGACGTGCCAGAGCGCTGGCGAGCAGGA
GGCGCTGTGCGTGCAGCTGCTGTCGTCGACCCCGGCGGCCCAGAAGACGCCGGTGGACACGCCCGGGCTCGCCCAGGCGG
CCGTGATGGCGGCGGGGTCGAACGCGACGGAGACGGCGGCGCACCTGCAACGGCTCTTCGACTCCGAAGACCTCAAGAAC
ATGAGCCCGGAGCTCCAGCGCTGCGTCGAGGACTGCACCGAGAGGTAGTACCCTTACCAAAGATGAAGAGCTAGCCATTA
CTAATCGAAGGTAGTAATCTCTGCATGCGATGTGTTTGATCTGGCCGTTGGCAGGTACCAGTCGGCCGCCAAGTTCCTGG
GCCAAGCATCGGAGAAGATGACCGCGGGCTCCTTCGATGAGGCGGGCGTGCTGATCGACGGCGCGCAGTCGGTGGTGAGC
CTGTGCCAGCGGTCGTGCCAGGGGGTGCCGCAGGGGGAGCTCACGGCGTGCACCAAAGGCGTC---GACCAACTCTGCAC
CATTGCCGCATCAGTCACTCGGTTGGTCGTTCAGAAGTAA----------------------------------------
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>chr1B_1_TraesCS1B01G242900
GTTATGGTACTCAATCTATTCTATTCTTTCACCCTGGATCTATTGACACATGCCTTTAGGTTGATTCTAAAATGTGTAAC
ACTATCTTTTACACAACGATACAATTTACAAACCGTTTACTTATTAGTGTTCATGACATTTGAACACGTTTTGAAAAGTT
CAAATTCAAGTTGGAAAACAACATTAGAAATTATGTGAAATCTGAAATGATGCAGTAATGAAACCTAGAATAAATTATTA
TGGAAAC-ACGTAGAAGTGTGTCTATTAAACATTTTTTTAATATGGTACTATCGAAAATGCTCACATACACGCACAAAAC
AACATTGAAAACATGTAAAATTAGGATGACATATACATATAAAACTACAATAAAAACGTGTTAAAAAAAGGCATTCTTGG
AACCGAAGGGAAACCTTGAAAAAAAGTAAACCAAATAATATGAAAGCTTATTTCGAAGAAATATATAATAGAAATGAACT
TGTAAGAAACAAGGAAAACATGATAAATTTGTAGAACATAAAAATTCAAATGAAACGAGTCAAAATAATAATTTA-TTTC
ATTATAGTTTCAGAATTTGGATTTTTTTTTAAATGTGTCTAAGATTGATTTTTGAACATCACAATCCAAACGGGACATAA
ATCGGGCAT-TGGTTCAAAGATAAAAAATGGTATAAACTTTAAAATCAAATAAAAGGCGTGGGTGGGTGTGAGCAAAATT
TCCTTTTGGCTCAAAACATACTCACTGCCTACTTACCATGGGACCGACAAGCTAGCTGGCCCACACGTCATTCTTTATAT
TT-AAGAAGAACGTGATTCAATCCATTTCTTCTTCACCTTAAAACAAGCACAGCCATCGAAAGCGAGCACACCCACACCC
TGTAATTGCCTTTGCTGAACGACAAACAACCATTCTAAAATTAGCAAAAACCTCGCAAGGATAAATACCCTGCTCACGCC
TCTCGTCTGATAATAGTAACAACATTTTCCATACCTACGCACCAATGGCGTCCTCGTCCATGATCACCTTCGCAGCCGCC
TTGTGCCTTGTGGCCGCTTCCGCCGTCGCCGTTCCGCCGGCCACCCTCCAGGAGACGTGCCAGAGCGCTGGCGAGCAGGA
GGCGCTGTGCGTGCAGCTGCTGTCGTCGACCCCGGCGGCCCAGAAGACGCCGGTGGACACGCCCGGGCTCGCCCAGGCGG
CCGTGATGGCGGCGGGGTCGAACGCGACGGAGACGGCGGCGCACCTGCAACGGCTCTTCGACTCCGAAGACCTCAAGAAC
ATGAGCCCGGAGCTCCAGCGCTGCGTCGAGGACTGCACCGAGAGGTAGTACCCTTACCAAAGATGAAGAGCTAGCCATTA
CTAATCGAAGGTAGTAATCTCTGCATGCGATGTGTTTGATCTGGCCGTTGGCAGGTACCAGTCGGCCGCCAAGTTCCTGG
GCCAAGCATCGGAGAAGATGACCGCGGGCTCCTTCGATGAGGCGGGCGTGCTGATCGACGGCGCGCAGTCGGTGGTGAGC
CTGTGCCAGCGGTCGTGCCAGGGGGTGCCGCAGGGGGAGCTCACGGCGTGCACCAAAGGCGTC---GACCAACTCTGCAC
CATTGCCGCATCAGTCACTCGGTTGGTCGTTCAGAAGTAATTATAACTTCTGGGTTGTGCGATGTATACCCAATTACCCA
TCGACATCGTTCAGCTGGTCAGTTATTTGATACTGACGGCCAGCGGCGGAGCTCCCCTTGGGCCAGCAGGGAACGGTGAC
CTCACCTTTGTTTGCGATCCTTTCATGTATATA--TAGCAGAGAAAT-TAGTACGTGTTAGCTTTTGTGGAAACTTGAGG
TCTGCCTGGCCAAACATGAGCCGGGTTAAGACGACAGTTTTTGTATTTTATTTAGGGAAATACACATTTAAATGGTGGAA
TACTATGTGTACATGAGATTTCTTGTACAAAAAATGTTACATTTGGTTTCTGTGGCTTGTGCAAAAACGCACTGTTAATT
TGGTGAATAGAAGACGAGAATAGAAGACGGCATGATGGAGAAGTGAGGAATAAATAACAAAAAACTACCACATTACGGGT
TAGGGTTACGAAAAACTACCACTTTTCTTAATTTTATAAAATGCTACCACAAATTTAGTTGGTTGTTCAAAAAAAAGGAA
AACCAAGTGACCGAAGCGGTTAAAATTTAAGTGTGGTTGTGACATCTCTAGCCCACCCGTCAGGTCCACGTCGGTTCTGG
CAGACGGTGCGTGTGCTGACAGCCGTTAGGGCGTGGCCCTTCCTACTGGGTCAAGACGACCTGAGCCAG-TCACTCCCGC
TCACTATGTCTTCTCTCTCTC--CCTCGATCCGGTAGACATAAGCGATGCTGGCGGCGGCGAAAGCACTCAACGGCGGTG
ACCCTATGGGGGGAGGTGGCACGGTCGGGGGGAGATAGGGCGAAGATTATTCGGAAGTGAATAACTGGCCGAGCAGCGGC
AGCTTCACAATGCATTGGCCGCCACAGCCTACATCACCGAGGCGGAAGCAGCCTA----------------CACCAGAGG
CACACCCTACGCCCTCTCCACCGGAGAATCAGGAGCCGTCGCTTGAGTACAAAGCGGCCAGGGCTCTTACTGTCGCCGTC
GCCGCGGATCCGGCGGGCTCCC
>chr1A_1
GTTATGGTACTCAATCTATTCTATTCTTTCACCCTGGATCTATTGACACATGCCTTTAGGTTGATTCTAAACTGTGTAAC
ACTATCTTTTACACAACGATACAATTTACAACCCGTTTACTTATTAGTGTTCATGACATTTAAACACGTTTTGAAAAGTT
CAAATTCAAGTTGGAAAACAACATTAGAAATTATATGAAATCTGAAATGAAGCAGTAATGAAACCTAGAATAAATTATTA
TGGAAAC-ACGTAGAAGTGTG-----TAAACATTTTTTTAATACGGTACTATCAAAAATGCTCACATACACGCACAAAAC
AACATTGAAAACATGTAAAATTAGGATGACATATACATATAAAACTACAACAGAAATGTTTTAAAAGAATGCATTTTTGG
AACCGAGGCGAAACCCTGAGAAAAATTAAACCAAATAATATGAAAACTTATTTCGAAGAAATATATAATAGAAATGAACT
TGTAAGAAACAAGGAAAACATGATAAATTAGTAGAACATAAAAATTCGAATGAAATGAGTCAAAATGATAATTTAGTTTC
ATTATAGTTTCACAATTTGGATTTTTTTT-AAATGTGTCTAAGATTGATTTTTGAACATCACAATCCAAATGGGACATAA
ATCAAGCATTTGGTTCAAAAGATAAAAATGGTATAAACTTTAAAATCAAATAAAAGGCGTGGGTGGGCGTGAGCTAAATT
TCCTTTTGGCTCAAAACATACTCACTGCCTACTTACCATGGGACCCCCAAGCTAGCTGGCCCACACGTCATTCTTTATAT
TTTAAGAAGAACGTGATTCAATCCATTTCTTCTTCACCTTAAAACAAGCACAGCCATCGAAAGCGAGCACATTTACACCC
TGTAATTGCCGTTGCTGAACGACAAGCAACCATTCTAAAATTAGCAAAAACCTCGCAAGGATAAATACCCTGCTCACGCC
TCTCGTCTGATAATAGTAACAACATTTTCCATACCTACGCGCCAATGGCGTCCTCGTCCATGATCACCTTCGCAGCCGCC
TTGTGCCTTGTGGCCGCTTCCGCCGTCGCCGTGCCGCCGGCCACCCTCCAGGAGACGTGCCAGAGCGCCGGCGAGCAGGA
GGCGCTGTGCGTGCAGCTGCTGTCGTCGAGCCCGGCGGCCCAGAAGACGCCGGTGGACACGCCCGGGCTCGCCCAGGCGG
CCGTGATGGCGGCGGGGTCGAACGCGACGGAGACGGCGGCGCACCTGCAACGGCTCTTCGACTCCGAAGACCTCAAGAAC
ATGAGCCCGGAGCTCCAGCGCTGCGTCGAGGACTGCGCCGAGAGGTAGTACCCTTACCAAAGATGAAGAGCTAGCCATTA
CTAATCCAAGGTAGTAATCTCTGCATGCGACGTGTTTGCTCTGGCCGTTGGCAGGTACCAGTCGGCCGCGAAGTTCCTGG
GCCAAGCATCGGAGAAGATGACCGCGGGCTCCTTCGACGAGGCGAGCGTGCTGATCGACGGCGCGCAGTCGGTGGTGACG
CTGTGCCAGCGGTCGTGCGAGGGGGTGCCGCAGGGGGAGCTCACGGCGTGCACCAAAGGCGTCGTCGACCAACTCTGCAC
CAATGCCGCATCAGTCACTCGGTTGGTCGTTCAGAAGTAATTATAACATCTGGGTTCTGCGATGTA--------TACCCA
CCGACATCGTTCAGCTGGTCAGTTATTTGATACTGACGGCCAGCGGCGGAGGTCCCCGTGGGCCAACAGGGATCGGTGAC
CACACCTTTGTTTGCGATCCTTTCATGTATATATATAGCAGAGAAAT-TAGTACGTGCTAGCTTTTGTGGAAACTCGAGG
TCTGCCTGGCCACACATGAGCCGGGCTAAGACGACGGTTTTTGTATTTTATTTAGGGAAATACACACTTAAATGGTGGAA
TACTATGTGTACATGAGATTTCTGGTAC-AAAAATGTTACATTTGGTTTCTGTGGCTTGTGCAAAAACGCACTGTTAATT
TGGTGAATAGAAGACGGCAC-------------GATGGAGAAGTGAGGAATAAATAGCAAAAAACTACCACATTAAAGGT
TAAGATTATGAAAAACTATCATTTTTCTTAATTTCACAAAATGCTACCACAAATTTGATTGGTTATTCCAAAAAACCT--
----AAGTGACCGAA-TGGTTAAAATTTAAGTGCGGTTATGACATCTCTAGCCCACCCGTCGGGTCCACGTGGGTTCTAG
CAGACGGCGCGTGTGCTAACGGCCATCAGGGCGCAACCGTTCCGACTGGGTCAAGACGACCCGAGCCGGTTCACTCCCGC
TCACTCTGTCTCCTCTCTCTCTCCCTCGATCTGGTAGACCTAAGCAATGGCGGCGACGACGAAAGCACTCGACGACGGCG
ACCCTATGGGGGGAGGCGGCAC------GGGGGGATGGGGCGGAGATTATTCGGAAGTGGATAACTGGCCGGGCGGCGGT
AGCTTCGCAACGTAGCCGCCGCCACAGCCTACACTACCGCGGCAGGAGCAGACTA----------------CACGAGAGG
CACAACCTACGCCCTCTCCACCGGAGAATCAGGAGCCGTCGCTTGAGTAGAAAGCGATCAGGGCTCTT------------
----------------------
>chr1D_85
TCG-----------------------------------------------------------------------------
-------TTTACACAACGGTACAATTTACAACCCGCTTACTTATTAGTGTTCATGACATTTAAACACGTTTTGAAAAGTT
CAAATTCAAGTTAGTAAACAACATTATAAATTATATGAAATATGAAATGAAGCAGTAATGAAACCTAGAATAAATTATTA
TGGAAAAAACGTAGAAGTGTGTCTATTAAACATTTTTTTAATATGGTACTATCAAAAATGCTCACATACACACACAAAAC
AACATTAAAAACATGTAAAATTAGGATGACATATACATATAAAACTACAACAAAAACGTGTTTAAAAAAGGCATTTTTGG
AACCGAGGCGAAACCTTGAAAAAAATTAAACCAAATAATATGAAAACTTATTTTGAAGAAATATATAATAGAAATGAACT
TGTAAGAAACAAGGAAAACATGATAAATCAGTAGAACTTAAAATTTCGAATGAAACGAGTCAAAATGATAATTTAGTTTC
AT-ATAGTGTCACAATTTGCATTT-TTTT-AAATGTGTCTAAGATTGATTTTTGAACATCACAATCCAAATGGAACATAA
ATCAGGCATTTGGTTCAAAAGATAAAAATGGTATAAACTTTAAAATCAAATAAAAGGCGTGGGTGGCTGTGAGCAAAATT
TCCTTTTGGCTCAAAACATACTCACTACCTACTTACCATGGGACCCCCAAGCTAGCTGGCCCACACGTCATTCTTTATGT
TTTAAGAAGAACGTGATTCAATCCATTTCTTCTTCACCTTAAAACAAGCACAGCCATCGAAAGCGAGCGCACCCACACCC
TGTAATTGCCGTTGCTGAACGACAAGCAACCATTCTAAAATTAGCAAAAGCCTCGCAAGGATAAATACCCTGCTCACGCC
TCTCGTCTGATAATAGTAACAACATTTTCCATACCTACGCACCAATGGCGTCCTCGTCCATGATCACCTTCGCAGCCACC
TTGTGCCTTGTGGCCGCTTCCGCCGTCGCCGTTCCGCCGGCCACCCTCCAGGAGACGTGCCAGAGCGCTGGCGAGCAGGA
GGCGCTGTGCGTGCAGCTGCTGTCGTCGAGCCCGGCGGCCCAGAAGACGCCGGTGGACACGCCCGGGCTCGCCCAGGCGG
CCGTGATGGCGGCGGGGTCGAACGCGACGGAGACGGCGGCGCACCTGCAACGGCTCTTCGAATCCGAAGACCTCAAGAAG
ATGAGCCCGGAGCTCCAGCGCTGCGTCGAGGACTGCACCGAGAGGTAGTACCCTTACCAAAGATGAAGAGCTAGCCATTA
CTAATCCAAGGTAGTAATCTCTGCATGCGATGTGTTTGATCTGGCCGTTGGCAGGTACCAGTCGGCCGCGAAGTTCCTGG
GCCAAGCATCGGAGAAGATGACCGCGGGCTCCTTCGACGAGGCGAGCGTGCTGATCGACGGCGCGCAGTCGGTGGTGACG
CTGTGCCAGCGGTCGTGCGAGGGGGTGCCGCAGGGGGAGCTCACGGCGTGCACCAAAGGCGTCG---ACCAACTCTGCAC
CATTGCCGCATCAGTCACTCGGTTGGTCGTTCAGAAGTAATTATAACATCTGGGTTCTGCGATGTA--------TGCCCA
CCGACATCGTTCAGCTGGTCAGTTATTTGGTACTGACGGCCAGCGGCGGAGCTCCCCGTGGGCCAACAGGGATCGGTGAC
CTCACCTTTGTTTGCGATCCTTTCATGTATATATAGAATAGAAATTAGTACTACGTGCTAGCTTTTGTGGAAACTCGAGG
TCTGCCTGGCCACACATGAGCCGGGCTAAGACGACAGTTTTTGTATTTTATTTAGGGAAATACACACTTAAATGGTGGAA
TACTATGCGTACATGAGATTTCTTGTAC-AAAAATGTTACATTTGGTTTCTGTGGCTTGTGCAAAAACGCACTGTTAATT
TGGTGAATAGAAGACGGCAC-------------GATGGAGAAGTGAGGAATAAATAGCAAAAAACTACCACATTACG---
------TATGAAAAACTACCATTTTTCTTAATTTCACAAAATGCTACCACAAATTTGATTGGTTATTCCAAAAAA-----
-ACCAAGTGACCGAA-CGGTTAAAATTTAAGTGCGGTTATGACATCTCTAGCCCACCCGTGAGGTCCACGTCGGTTCTGG
CAGACGA-GCATGTGCTGACGTCCATTAGGGCGCAACCGTTCCGACCGGGTCAAGACGACCCGAGCCGGTTCACTCCCGC
TCACTCTGTTTC--CTCTCTCTCCCTTGATCTGGTAGACCTAAGCGATGGCGGCGGCGACGACCCTATG-----------
-------GGGGGGAGGTGGCAC------GTGGGGAGAGGGTGGAGATTATTCGGAAGTGGATAATTGGCCGGGCGGTGGC
AGCTTCGCAACACAGCCGCCGCCACAGCCTACACCGCCGAGGCAGAAGCAGACTACACCAGAGGCAGAACCCACCAGAGG
CACAACCTACGCCCTCTCCACCGGAGAATCAGGAGCCGTCGCTTGAGTACAAAGCGACCAGGGCTCTTGCTG--------
----------------------
>SNPs
-----------------------------------------------------------------------S--------
-------------------------------S-----------------------------S------------------
----------------------------------S---------------S-----------------------------
-----------------------------------------------------S--------------------------
--------------------------------------------------S------------------------S----
------S-S----------------S-------------------S----------------------------------
-----------------------------S-----------------S------------------S-------------
------------S----------------S----------------------------------------S---------
---S---------------SSSS---------------------------------------------------------
---------------------------------------------SS---------------------------------
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----------S--------------S------------------------------------------------------
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-----------------------------S--------------------------------------------------
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------S--------------------------------------------------------------S----------
-------------------------------------S------S---------------------------------SS
------------------S-------------------------------------------------------------
-----------------------------------------------S--------S---------SSSSSSSS------
S--------------------------------------------------------S-------S------S-------
---------------------------------------------------------S-----------------S----
------------S------------S----------------------------------------S-------------
----------------------------S---------------------------------------------------
----------------SS-SSSSSSSSSSSSSS-----------------------S-----------------------
--S-S---S------------S------------S-S-------------------SS------S---S------SSSSS
S--------------S-----------------S----S-----------------------------------------
-------S------------S---S--------SSS--S----S-----------------S-----S------------
-----S-----S-------------------S-------S---------SS-------S-----------S---S---S-
----------------------SSSSSS----S---------S----------------S-----------S--S-----
------S---S---SSS----------------S---------S-------S----------------------------
----S---------------------------------------------------S-----------S---SSSSSSSS
SSSSSSSSSSSSSSSSSSSSSS
>forward_891
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TGTAATTGCCT---------------------------------------------------------------------
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>reverse_2524
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-------------------------------------------GGAAGCAGCCTACACCAGAG-----------------
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