>input_sequence_73402
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---------------------------------------------------------------------------ATGTC
CTCCAACGCCTACTCCGGCCCCGGTGATGACGGCGCGACGCCCTACACGGCCGGGGTCGCCGTCGTCGTCAGCGTGCTCT
TCGTCCTCGCGCTCGTCAGGCTGGCCCGCTACATCCTAGGCCCGCCCAGTGACAGTGAGGCGCAGCAGCAGCCAGCCCAG
GGCCGCGGTGACGGCGAGCCTCTGGCGGAGGTGGCCGTGGAGGTGCGGTCGGTGGAGGCGGTGGTGTGCGCGTACCGGAG
GGGAGCAGTGGCGTAGCTAGCCCAACATGCCAGGGTGGTCCACCAATGCAAAATATTCACATAAATATATTTATTTATTA
TAAAAATATATTTTTCTCTATGCTATATATATTATGGGGAAATTCCAGGGTGGTCCATGGACCACCCTGTCCACCCCCTA
GATACGCCACTGGAGGGGAGACGGGTGGCGGGAGGCCACGTGCCCCGTGTGCCTGTCCGACTTCGCCGACGGCGAGACCG
TCAGGGTGCTGCCGGCATGCATGCACTACTTCCATGCAGCTTGCGTCGGCGAGTGGCTGCGCCGCAACACCACCTGCCCG
GTCTGCCGCACCGCGCCACCGCCGCCATCACCAGCAAGGTCTCCGGTCAAGGCCACCTCCACGGAGTGA-----------
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>chr4A_1_TraesCS4A01G174600
GCCGGAAGGGATCCGTGGTCCGGCCCCGAGCAACGCCGGTGCTGATCCTGCTCAGGTGCTGAAGAAGGTGCATGCGGCCG
GGCCGGTGGTGTGCGTGTACCGGAGGAGCGACGGGTGGCGGGAGGCCATGTGCCCGGTGTGCCTGTCGGACTTCGCGGAC
GGCGAGGCCGTGAGCGTGCTGCCGGCGTGCATGCACTACTTCCACGCCGCGTGCGTCGGCGAGTGGATGCGCGCGCGCGC
CACCTGCCCGCTCTGCCGCTCCGAGCCGGA---ATCCGGTGTCGTCTGAGTGACACCAC-----GT-ACATGAATGCAGT
TCCCCCTGAACCACCTGGACCGCGTCACACGAACGACACGCCCGGCGCGCGGTG---AGCGCAGGTCGCCGTGCACGCAT
TGCGCGATTGCTGTCTTT--TCTCCCCCTGTA------ATCTGTTCCTCCCGTGTAATGTAATTGTATAT---------A
TACACCAGTAACAACACAGCACCATGAATAT-------------------------------------------GTGACC
ATCGTAACATGTGCCTCGAGTTCATTCTCTAGTTTAGTAACTGGTGCCTGAGAAACGTCGTGACGTGCAGGCTTCATTTT
ATTTTTCCG-----------------------------------------------------------------------
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---------------------------ACGTTGAAATTACCAAAGAACAAGGCGACTCAAGAAGAGCAATTCCGACGACG
CGAGCTATATATGAACGTCGTGCGTGCAAGTCTGCTTGTGCTACTACTATATGTTACTACACCAGAGCAGAATATCCATC
ACATGAGATGAGATCAAT---ATAAATGCTTTGCGTATGTAACTAGCCTTCTCGTC------------------------
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------------------------------------------------------------------------------GT
AGCTAGTTTTTGACTGGCCGGATCCGACAAACTAAGAAACGGAGAGCGTTACATCACTCGATCTCGACGGATGGTGCCGA
TTATAACAAGTCGCCAGCCTCGTAGCCATCGTTACTCTTCCATTAAGTAGCGCGTACGTGTTAATCACCGCACGCCACAT
GATCGATCGGCTTAGGCTATTTAGTCTCGCAAATTAACCAAAGCAGCCAGCGGCCTTCTCGTCGGTCGTCGATCGATGTC
CTCCAACGCCTACTCCGGCCCCGGTGATGACGGCGCGACGCCCTACACGGCCGGGGTCGCCGTCGTCGTCAGCGTGCTCT
TCGTCCTCGCGCTCGTCAGGCTGGCCCGCTACATCCTAGGCCCGCCCAGTGACAGTGAGGCGCAGCAGCAGCCAGCCCAG
GGCCGCGGTGACGGCGAGCCTCTGGCGGAGGTGGCCGTGGAGGTGCGGTCGGTGGAGGCGGTGGTGTGCGCGTACCGGAG
GGGAGCAGTGGCGTAGCTAGCCCAACATGCCAGGGTGGTCCACCAATGCAAAATATTCACATAAATATATTTATTTATTA
TAAAAATATATTTTTCTCTATGCTATATATATTATGGGGAAATTCCAGGGTGGTCCATGGACCACCCTGTCCACCCCCTA
GATACGCCACTGGAGGGGAGACGGGTGGCGGGAGGCCACGTGCCCCGTGTGCCTGTCCGACTTCGCCGACGGCGAGACCG
TCAGGGTGCTGCCGGCATGCATGCACTACTTCCATGCAGCTTGCGTCGGCGAGTGGCTGCGCCGCAACACCACCTGCCCG
GTCTGCCGCACCGCGCCACCGCCGCCATCACCAGCAAGGTCTCCGGTCAAGGCCACCTCCACGGAGTGACGGCAGTCGTT
GTGTGTTTGCTTCGAGTGCAAGTAGAGAAACCAGTTTGAAAGTTGTCTGTTTAATGAGGATTTATGAATTCTTACTTGTG
ATACACCATGATGCCGAGTA--ACGCTACATTCACAGATCATTACAAGGATTTTACAGGGTCGTTATGACTTGGCAGATG
GTGATTGGTTCAAGAGGGAGGGAGGAGCCCCACCCACCTAAAAATTAGA-----------------GGGGGCGGAGAGAA
TTAGAGGAAGGAGCCCATGAACTCCGGTCCGTGGGATTAGCAATTTCGCCCTGATTGCCATTTATCGCTCGCCTCATTAG
AACTCATGGCCAACAAAATAAGGAAGATGAGTAATACTCCTTCTCTAAAGAAATATAAAAGCGTTTAGGGGATAACGATT
TGTGGCTCTCGGGTGCCACACAATGACACACCCTATATGAATATAGCACTAGAAAACGTATTAAGAATATTTTGTTTGAG
ATTTTGGATATAAAACGCGGGTGCCTGTTGTACACACGGGTTCAGTTTCGTGAGGAATGGGTGACCGTGATAATGCCAGT
AAAAAAGACAAAAAAGTTGTATGTGTAGAAAAAAAACTAAATGTAATGTATGTCGGGATGTAATTCCTACGCCACTCAGA
TTTCATATTCCAAAATTCGAGATTTTTTCGAAATTTCCTGATATTTTTTTTAAATGCTATTTTCATATAGGGGTGTGTTG
CACCCGAGAGCTGCAATGCATTTTCCACCGTTTAGGTCACTACTTTCCTGCTATTTCATCTCAATGTTCAGAATCATGAC
GAGATAGAGGCAAATGGAGCTAGAAAGACCAAGCCTAGTATGTGATTTATTGAAAATATGATGATATGTCTATATACAGA
TGGTCAATGCCAAACACACTGCAAATGATACGTCAATAGATTTGCCGGAGTGGCATTTATGGTACAAAACTACAGGCAGA
GAATTGCGGGCGTGGACAATCCGTCAGAGTCCAGTGCTCACATCTTCC
>chr4D_1
GCCGGAAGGGGTCCGTGGTCCGGCCCCGAACAACGCTGGTGCTGACCCTGCTCAAGTGCTGAAGAAGGTACATGCGGCGG
GGCCGGTGGTGTGCGTGTACCGGAGGAGCGACGGGTGGCTGGAGGCCATGTGCCCGGTGTGCCTGTCGGACTTCGCGGAC
GGCGAGGCCGTGAGCGTGCTGCCGGCGTGCATGCACTACTTCCACGCCGCGTGTGTCGGCGAGTGGCTGCGCGCGCGCGC
CACCTGCCCGCTCTGCCGCGCCGCGCCGGCAACATCCGGTGTCGTCTGAGCGACACGAAGCAGAGT-ACATGAATGCAGC
TCCTCCTGAACCACCTG----------------------------------------AGCGCAGGTCGCCGTGCACGCAT
TGCGCGATTGCTGTCTTTTCTCGCCCCCTTTA------ATTTGTTCCTCCCG-----TGTAATTGTATAT---------A
TACACCA---------CAACACCATGAATATCTGTACATCCACAGCGTCCCTCACTCATCTCACTTATCTGGAGGTGACC
ATCGTAACATGTGCCTCGAGTTCATTGTCTAGTTTAATAACTGGTGCCTCAGAAACGTCGTGACGTGCAGGCTTCATTTT
ATTTTTCCG-----------------------------------------------------------------------
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---------------------------ACGTTGAAATTACCAAAGAACAAGGCGACTCAACAAGAGCAATTCCGACGACG
CGAGCTATATATGAACGTCGAGCGTGCAAGTCTGCTTGTGCTACT-------------ACACCAGACCAGAATATCCATC
CCATGAGATCAAT---AT---ATAAATGCTTTGCGTATGTAACTAGTCTTCTCATC------------------------
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------------------------------------------------------------------------------GT
AGCTAGTTTTTGACTGGCCGGATCCGACAAACTAAGAAACGGAGAGCGTTACATCACTCGATCTCGACGGATGGTGCCGA
TTATAACAAGTCGTCAGCCTCGTAGCCATCGTTACTCTTCCATTAAGTAGCGCGTACGTGTTAATCACCGCACGCCACAT
G---------CTTAGGCTATTTAGTCTCGCAAACTAACTAAGGCAGCTAGCAGCCTTCTCGTCGGTCGTCGGTCGATGTC
CTCCAACGCCTACTCCGGCCCCGGTGATGACGGCGGGACGCCCTACGAGGCGGGGGTGGCCGTCGTCGTCAGCGTGCTCT
TCGTCCTCGCGCTCGTCAGGCTGGCCCGCTACATCCTAGGCCCGCCCAGTGACGGTGAGGCGCAGCAGCAGCCAGCCCAG
GGCCGCGGTGACGGCGAGCCTCAGCCGGAGGTGGCCGTGGAGGTGCGGTCGGTGGAGGCGCTGGTGTGCGCGTACC----
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-----------GGAGGGGAGACGGGTGGCGGGAGGCCACATGCCCCGTGTGCCTGTCCGACTTCGCCGACGGCGAGACCG
TCAGGGTGCTGCCGGCGTGCATGCACTACTTCCACGCAGCGTGCGTCGGCGAGTGGCTGCGCCGCAACACCACTTGCCCG
GTCTGCCGCACCACGCCACCGCCGCCTTCACCAGCAAGGTCTCCGGTCAAGGCCACCTCCATGGCGTGACGGCAGTCGTT
GTGTGTTTGCTTCGAGTGCAAGTAGGGAAACCAGCTTGAAAATTGTCTGTTTAATGAGGATTTCTGAATTCTTACTTGTG
ATACACCCTGATGCCGAGTA--ATGCTACATTCA----------------------------------------------
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>chr4B_1
GCCGGAAGGGATTCGTGTTCCGGCCCCGAACAACGCCGGTGCTGATCCTGCTCAAGTGCTGAAGAAGGTGCATGCGGCCG
GGCCGGTGGTGTGCGTGCACCGGAGGAGCGACGGGTGGCGGGAGGCTATGTGCCCGGTGTGCCTGTCGGACTTCGCGGAC
GGCGAGGCCGTCAGCGTGCTGCCGGCGTGCATGCACTACTTCCACGCCGCGTGCGTCGGCGAGTGGATGCGCGCGCGCGC
CACCTGCCCGCTCTGCCGCGCCGAGCCGGC---GTCCGGTGTCGTCTGAGTGACACCAAGTATAATAACATGAACGCAGC
TCTTCATGAAACACCTGCACCTTGTCAAACGAATGTCACGCCCGGCGGGCGGTGGTGAGCGCAGGTCGCCGTGCACGCAT
TGCGCGATTGCTGTCTTTTCTTTCTCCCCTCTTTAAAGATTTTTGCCACTCA-----TGTAAGTGTATAAGTGTATATAA
TACTCCA---------CAACACCATGAGTACTA-----------------------------------------------
-------------CCTCGAGTTCATTGTCTAGTTTGGTACGTCTGGTGCAATGATTCTTTTACAGTTTGTTTAATTCACA
TCTAGATATTTTTTAAATATGTCACATCTAACTCCCACAAATATATAATGCAGCAACAAGAAACAAAAAATCTTAGAAAA
AAAAGACAACAACCAGATTGAAAATCAGCATGTCACATCCAGATATGTCTTAAACAGACCCATTCTTTTAACACAGTGCT
AACGCGTTTTGTTTTCACGAGCCTGTCACGTTGAAATTACCAAAGCACAAGAACAAGAACAAGTAG-------------G
CGAGCTATATATGAACGTCGTGCGTCCAAGTCTGTTTGTACTACTACTATACTTGTTAC------ACCAGAATATCCTTC
ATATGAGATGAGATCAATATAATAAATGCTTTGCGTATCTAACTAGTCTTCTCATCATACTCCCTCCGTCTAGGTGAGTA
AGTCATCTTAGGTTGTGCACCGTGACCAAGGAGGAGGAGAAAACGAGAGAACTTAATGTTCATTTGCTAATTAATAGCAT
TGCATGCAATGAACTAACCACTGCATGTCGTGTTTGATAGTCTCAAGTCATTAAAAGCATGCACACCCCACATCTCTTAG
AGCATGGTTAATAGCACAGCCTGCTGCTGGCTATAACCCCCTGCCACATCATCTATAAAGCCTTCACACACAGTAAGCTG
GCTTATAGGTTGGCTCTAAGACTGACCCTAATAAAGACATGGACATTTAATATTTGCATGTGTATATCACCTGTTGTGAT
CCAATACAAACAACATCTTTGTGGCCATTTCAATCAGCATATATCTATCATTCATGCCAAGAGAATATACCAAAAGAAAC
TGATCAATATTCAAGCAGTTTCGATAATTATATATACATATATGCCATTCATGCCAATAGAACAGACCCAGAAAAACTGA
TTAATAAACAATCAACAAACAGGTGTGCATAGCAGATAGCACCATGACACCACACTTGAACATTGCTTGAGTCTTCCCAA
GGAAGCATTAACCAAACATAGAACTAAATAAGACGCCCGGCAAACAAGCCGTTAGTTTTAATCATAACGAACAAACTGAT
GGCACATAACACCATGACATTGACACTTAAACATCACACCAGTCTTTTTAAGAGAACATTAAGCAAACAAGAGACAATGC
AAACAAGCCATTAGTTTTGATCTTGACGATGATAAGTTGGAATTTCAATAGAAAAGAGCGACGAATCCATCTGCATCAAT
AATCTCCAGCCACTGTATGAAAAAATGGAAACATAGCGGATGGTAAACATTTCCACATGAATGCTAATGATGATGAGATG
AAGATAGCATGCTCATGACAGTAAGACTCAGATGCATTAGACTTATATTTCAGCACATGAGAATTTCAGCAGTGATGGTT
TGATAAAAAAGTCAAATTTAACTAAGGCAATGGACAATAGGAAATACCTTAGTCAGTTTTGCCAAATAGCTTCTCCCGGA
AACACTTCAATGCCAACACGTCCTCACATCTCACATCTTCAGACATCCTAGTTGTGTCTTGCATCATCAACGAGCGGTAT
GTTTCTAGCATGACTGACTCCTTGTGATCTTTTGCTGCAAGGCATGGAAGCTTCCGAGCCTCAAGATTGTGAAAGGCTTG
GCGTGTTGTTAAATAAACCAAGGAACCCACCAGGTGGGTGAGAATCCACTCCCCTGCCAAGACAATACTAGTTGATCAAA
CAATCGACTTCATATTACAACATGGTTTAATAAATAAAAAAGAAATCACATTTTAGCAAAGAACATTTCTGTAGATAGGA
ACTATCAGAACATACTGTAGTACAGATCATACAAACACACACAAACTAGTTATCACATTATAATAAGCTAAGTGCTACAA
TATTCTTACAAACGAATCCTGGAAATCATTATACATAACTGTACACGAAACGTTATTTCCCTTTGCATATTTTAAGATTC
CCAGTTATATGAACATTATTTAATTCATTAGAGAAACTTCTGAATGTTCAGAGTTTCAGATAAGATGATACACTTATTTT
CTGTTTCTGTCATATCCATTTTTAAATTACAACAGCTGAGCATCATATCAAATACATATGGTTATCCGTAGGTACTAATA
CTTTATCGATTCATATCATAGAAAAACGCATGCTGCATATCATGTAAATATCTGACAGTTTGACACCAACAAAGACCATC
TGAATGTTCAGAGTTCAGATAAGCAGGGAAAGAAATGTAAGCAGGAAAGCATTGCATGACAATACCAACTTACCAGAGAT
GCATAAACAGGTGAACAAATGTATCAAATAGAAGGCTAGCATGGCAAGACCGAACTAGTAAACAGGGGGGTGGGGGCACA
TACCATGCTTCTGGAGTCAAATTGTCAATATCCCTGTACCACAAGGGGCCTTGCGTCTGGGGGAGCCAGCATGGTGTAGA
GGCCGCCGCTGCCTTTGGTGGGCTGGCGTGGTGGTGGGACAAGGTGAGGTGCCAGCGGCGGGACGAGGTGCAGCGCCGAT
GGCAGGATTAGCTGTGGCGCCGACGGCCGGACGAGATGATGCATCAACGGCGGAACGAACTGAGGCAGCGACGACGGGGC
GAGTGCCGGTGCACCCGTCCTTTTGGACTGCTGAGTGCTGACCATCTCGTTGATGCGGCGCCGCCGGCTGTTCTAGGGTT
CGGGAGCGGTGGCGATTTCGGGGAAGCTGGAGGCGATTTGGCGCGCATCAAGCAATTTGGAGTGAGGCAAGGATTGATTT
CGCGCGCAGAGCTGGAAGAACAAGCGCACGAGGCAAGGGAGACGCAGGGGATCGAAAGCGGCGGCGCTAGCGCTCGCATC
AGGCTGCAAGCGGGCGGAAAGTTCTCGAGTTCTGTGTCTTAGCCCGGCGACTCACGAAGAGCCCGCTCCTTCTCTCTCCT
TTCTCCAGCTCAGATTTTTGCTGACGTGGACTTCGTTATAGCCTGCTGAATAGGACTATTGTACTTGCTCATGGGGGAGT
AGCTAGTTTTTG-------GGATCCGACAAACTAAGAAACGGAGAGCGTTACGTCACTCGATCTCGATGGACGGTGCCGA
TTATAACAAGTCGCCAGCCTCGTAGCCATCGTTACTCTTCCATTAAGTAGCGCGTACGTGTTAATCACTGCACGCCACAT
G---------CTTAGGCTATTTAGTCTCGCAAATTAACTAAGGCAGCTAGCGGCCTTCTCGTCAGTCGTCGATCGATGTC
CTCCAACGCCTACTCCGGCCCCGGTGATGATGGCGGGACGCCCTACACGGCCGGGGTCGCCGTCGTCGTTAGCGTGCTCT
TCGTCATCGCGCTCGTCAGGCTGGCCCGCTACATCCTAGGCCCGCCCAGTGACAGTGAGGCGCAGCAGCAGCCAGCCCAG
GGCCGCGGTGACGGCGAGCCTCAGCCAGAGGTAGCCGTGGAGGTGCGGTCGGCGGAGCCGGTGGTGTGCGCGTACC----
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-----------GGAGGGAAGACGGGTGGCGGGAGGCCACATGCCCCGTGTGCTTGTCCGACTTCGCCGACGGCGAGACCG
TCAGGGTGCTGCCGGCGTGCATGCACTACTTCCATGCAGCGTGCGTCGGCGAGTGGCTGCGCCGCAACACCACTTGCCCG
GTCTGCCGCACCGCGCCACCGCCGCCATCACCAGCAAGGTCTCCGGTCAAGGCCACCTCCACGGCGTGAGGGCAGTCGTT
GTGTGTTTGCTTCGAGTGCAAGTAGAGAAACCAGCTTGAAAATTGTCTGTTTGATGAGGATTTCTGAATTCTGACTCGTG
ATACACCCTGATGCCGAGTATAATGCTACATTCATGGATCATTACGGGGGTTTTACATGGTCATTGTGACTTGGCAGATG
GTGATTGGGTCAACAGAGAGGGAGGGCTT-CACCCACCTAAAAATCAAGAAGAGGTGTGTGTGTTGGGGGGCCAAGAGAA
TT-------------------------------GGTTTAGCAATTTCGCCCTAAT-GCCATTTATCGCTCGCCTCAGTAG
AATTCATGGCCAACAAAACAAGGAAGACGAGTAATGCTCCCTCTATAAAGAAATATAA----------------------
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>SNPs
-----------------------------S------------------------S-------------------------
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-------------------S---------S----------------------------S--------------------S
---S-------------S---SS----S-----S-S-----------S--------------------------------
-----------------------------S----------S-----------SSSSS-----------------------
-------SSSSSSSSS--S-------------------------------------------------------------
--------------------------S----------------------S------------------------------
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------------------------------------------------------------S-------------------
---------------------------------------------------SS-SSSS--------S-------------
----------------------------------------------S------S--------------------------
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-SSSSSSSSS----------------------------S--S-----S--------------------------------
-----------------------------------S--------------------------------------------
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----------------------S-S---------------------------------------------------SSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSS----------------------------S----------------------------------------
----------------S-----------------------S--------------------------------S------
----------------------------------------------------------------S---------------
----------------------------------S------S---------------------S----------------
-------S---------------S----------SS---------SS--S-------S----S--S--------------
--------S----S--S--------SSSSS---------------S-SS-----------------------SS------
--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--S----------------S--S--------------------S---
--S---------------S--------S-------S----S---S-------------SSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_299
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---------------------------------------TGTCGTCTGAGTGACACCAC---------------------
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>reverse_4997
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------------------------------------CGGGTTCAGTTTCGTGAGGA------------------------
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