>input_sequence_73387
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---------------------------------------ATGCATGTAGATAGCACCTCTA-----------------TA
TATGTGAGTGACATTCATATCCCAGTAGACATGGCTTCAACGATGGGTTTGAAGAAAGCTCTGCGTTGGATGCCACGTTC
CTCTGCCAGCCCCCGGCTGGAGGAAGACGAAGACAACAACGAGAGGAACGGGCTGCTGAGGAGCCACCGGGATCAGAACC
GGGTCGTGCCCGTGACGGATCTCCATGTTGACGAGCAACCCAAGGCAGGTGCGCATGTGGAGCCCAAGGTAAGCTAGCGC
GTGATTCCGGAAACGCAAGCGGAAGCGGAAATTTACCTCGAGATGTGGCCGTAACTTGTGGCACCTAATGTTTCCCTTGC
ATTGGCATG-CATGGCGCAGACCGTGGCCCTGAAGGTGTCGATGCACTGCCATGGCTGTGCGAGGAAGGTCGAGAAGCAG
ATCTCCAAGCTCCACGGTAGGCGATCAAGTGTACTACTACAAGTGTACATACTATGAGAGTATGAGTTGCCTCTTGTTGT
GCAGGAGTTGTGTCCATCAGAATAGAGCTGGGGATGAAGACGGTGACCGTGGTTGGCAATGTGACCCCCATGCAAGTCCT
GGAGACCGTCTCCAAGGTGATCAAGTACGCGCACATTCTGCCGCTGCCCTAG----------------------------
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>chr3D_1_TraesCS3D01G216100
TTCTTCTCTGCTCTGCATACTCATCGTGACATGCGCTCATCTTATGCAGGCCCTGTTGTAGGCCCTTTGTGATCTCTGGT
TATGATCTGAGCACTTTGGGTGGCTTGGTGTCCTAAATTATATTAGGTACTGTTCTGTTCTGGCATTTTTGGTTCTTAAG
TTTCCAAGATAAATGTATTTTAATTGAGCAAAGCACCGTTCCTCCGAGATGTTCCCCCTTTTCTCTTGTTTTCTCCTTTA
CCCTTCTATCCCCCGCGTGCATTATCTCCCAATCATGTAAATCCTGACTTGGAGGTTGGATACCTGGGTTAACTATGATT
TATGTTGTGGCAGGTCTTATAGATGCCTGCTCGTGCTGTAGTTATCTGATGGGGGTCGCTTCACAGCAGAGCAGGGGGTG
CATTTGTTGCTTGAGTTGTGGTAAGCCTGTTTTTCAAGAGCAGCACTTGAGAAATGCACTTTAGAGTTTTGGTGAGAATG
CAACTAATTGCGCATCATGAAATTTTAGGTGTTGCTTGGTCGAAATGTCTAATTTGTTGGTGGCATCTGAAGACGTGAGC
GGTTGTTGAGGAGAGGTTTGAATAATGATCTGTGTTGATTGATAAAGAAAAGCAAGAAGGGCTTTTAGTACATTTTGTTA
GTGACTTGAATTTATGTCAGTATAAC-TCTGATGTACCTATCTATCTATCCTCCAATAGTGGTATTGGCAAGAGCAAGTG
GCTTTGTTGCTGCAGTTTGTATCTTTTGGAGTATGTGGGAATGGGGGTGAGATTTGTCAATTTTGTGCCTGATGAGT--G
CCCAA--------TCAATTGTGTGC-------------------------------------------------------
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------------TACTTCGGTTCGATATGATCACATTACTAAGTTGACGGCAGTGTTGCCTCAGTCACAACCACAGTCAC
TCAACTAATCGCCTAATCGTTTAGTTGGACGGATAGATCTACCAGCGACTTTGCTAAGGATTTTTTC-TCTAGGTTGGTG
GTTGATCTTCTTCGTATCCCTAATAGTATTGGTTGCCTGATGCATGTAGATAGCACCTCTA-----------------TA
TATGTGAGTGACATTCATATCCCAGTAGACATGGCTTCAACGATGGGTTTGAAGAAAGCTCTGCGTTGGATGCCACGTTC
CTCTGCCAGCCCCCGGCTGGAGGAAGACGAAGACAACAACGAGAGGAACGGGCTGCTGAGGAGCCACCGGGATCAGAACC
GGGTCGTGCCCGTGACGGATCTCCATGTTGACGAGCAACCCAAGGCAGGTGCGCATGTGGAGCCCAAGGTAAGCTAGCGC
GTGATTCCGGAAACGCAAGCGGAAGCGGAAATTTACCTCGAGATGTGGCCGTAACTTGTGGCACCTAATGTTTCCCTTGC
ATTGGCATG-CATGGCGCAGACCGTGGCCCTGAAGGTGTCGATGCACTGCCATGGCTGTGCGAGGAAGGTCGAGAAGCAG
ATCTCCAAGCTCCACGGTAGGCGATCAAGTGTACTACTACAAGTGTACATACTATGAGAGTATGAGTTGCCTCTTGTTGT
GCAGGAGTTGTGTCCATCAGAATAGAGCTGGGGATGAAGACGGTGACCGTGGTTGGCAATGTGACCCCCATGCAAGTCCT
GGAGACCGTCTCCAAGGTGATCAAGTACGCGCACATTCTGCCGCTGCCCTAGCGATGCTGTTTCCCGGTCCACTGTGTGG
TGATCGCACTTTTCTTTGATGAAAACGATGAGCGCTATCCCTCTTTTTACTC----------------------------
------CTTTTAGCGCTCAATCTGTATCCTGAAAACAGAAAATCATATGTAGATTGTCATTTCAGGAGCCACCCGTGCCC
TGGGCTCCTGGCAACTCGATCGTCTCA-----------------------------------------------------
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-------------------------TCAATCTAAAATATGTTGTTTGTGGTGGA-----------ATCAGGGTCCACGTG
TGCTTGCA-TTTTTCTGAATTTATTTCAGACTTCCGGTGATGTCTGTTCAGTGGGAGAGAGGAGACAGTTATGTCGACTA
TGGAGACGCGTGCAATGACTTCGTCAATCTCAAGATGATGTGTCGGCTTTATTTCTCGAAAGTGCTCATAGGGGTAGGGC
GTACGTTCGTGCGCATAGGATGAGTGTATGCTCGTATATATGAGCGCCTATGTTGGTGCCGTGTTAAAAATAATCTCAAA
AA-TGTATTCCGTCTTAGGGCATCTCCAACATTGGC--------------------------------------------
--------------CCTCGAATCGCGCGCATCTGTCTGGACCGAGTGGTCCGGATGCA-TTTGACATCCAACACGGTACC
TCATCGATCCGTGGACCGGTCCGGAGGTTCGTTTTCCCACAAACCAGAGGCAAAGCAGGGAGCTTTACGGGCGTCTGGAC
CGCTGCCATGCATGCACCAAAAACTCGGACGGGACGTCGATCCCAATCATGATAGCAAATAGGATAACTCCTCGGGTCGC
ACACCTCGTTGATCACCACATAGTGGAACCACAGGCCGTTCCCGGGGGCTGCATAGACAACCCAATACGACGCGTCGAAG
TACTCCGTGGAGATATCGACGACTTCCTTCGACTTTACGCCATAATAAGCATTGATGTCCACTTGTGTCTTTGGACAATA
GCTGGGTTGTCTGGCTCCTATATTTACTCCCTACGTTTCTGCTTGTTTGGCTAACGGCATACCGGGAGCACCTCTGTGAT
TGTTATTTCTGGTTGAACCAGTTAAGTACCTTAGGT
>chr3A_1
TTCTTCTCTGCTCTGCATACTCATTGTGACATGAGCTCATCTTATGCAGGCCCTGTTGTAGGCCCTTTGTGATCTCTGGT
TATGATCTGAGCACTTTGGGTGGCTTGGTGTCCTAAATTATATTAGGTACTGTTCTGTTCTGGCATTTTTGGTTCTTAAC
TTTCCAAGATAAATGCATTTTAAGTGAGCAAGGCACTGTTCCTCCGAGATGTTCCCCCTTTTCTCTGCTTTTCTCCTTCA
CCCTTCTATCCCCCGCATGCATCATCTCCCAATCATGTAAATCCTGACTTGGTGTTTGGATACCTGGGTTAACTATGATT
TATGTTGTGGCAGGTCTTATAGATGCCTGCTCGTGCTGTAGTTATCTGATGGGGGTTGCTTCACAGCAGAGCAGGGGGTG
CATTTGTTGCTTGAGTTGTGGTAAGCCTGTTTTTCAAGAGCAGCACTTGAGAAATGCACTTTAGAGTTTTGGTGAGAATG
CAACTAATTGCGCATCATGAAGTTTTAGGTGTTGCTTGGTCGAAATGTCTTATTTGTTGGTGGCATCTGAAGACATGAGC
GGTTGTTGAAGAGAGGTTTGAATAATGATCTGTGTTGATTGATAAAGAAAGGCAAGAAGGGCTTTTAGTACATTTTGTTA
GTGACTCGAGTTTATGTCGGTATGAGTCA-GATGTACCTATCTATCTATCCTCCAATAGTGGTATTGGCAAGAGCAA--G
GCTTTGTTGCTGCAGTTTGTATCTTTTGGAGTATGTGGGAATGTGGGTGAGATTCGTCAATTTTGTGCCTGATGAGTGCG
CCCAA--------TCAATTGTGTGC-------------------------------------------------------
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------------TACTTCGGTTCGATATGATCACATTACTAAGTTGACGGCAGTGTTGTCTCAGTCACAACCA-AGTCAC
TCAACTGCTCGCCTAATCGTTTAGTTGGACGGATAGATCTACCAGCGACTTTGCTAAGGATCTTTTC-TCTAGGTCGGTG
GTTGATCTT---CGTATCCCTAACAATATTGGTTGCCTGATGCATGTAGATAGTACCTCTA-----------------TA
TATGTGAGTGACATTCATATCCCAGTAGACATGGCTTCAAAGATGGGTTTGAAGAAAGCTCTGCGTTGGATGCCACGTTC
CTCTGCCAGCCCCCGGCTGGAGGAAGACGAAGACAACAACGAGAGGAACGGGCTGCTGAGGAGCCACCGGGATCAGAACC
GGGTCGTGCCCGTGACGGATCTCCATGTTGACGAGCAACCCAAGGCAGGTGCGCATGTGGAGCCCAAGGTAAGCTAGCGC
GTGATTCTGGAAACGCAAGCGGAA------ATTTACCTCGAGATGTGGCCGTAACTTGTGGCACCTAATG----CCTTGC
ATTGGCATGGCATGGCGCAGACCGTGGCTCTGAAGGTGTCGATGCACTGCCATGGCTGTGCGAGGAAGGTCGAGAAGCAG
ATCTCCAAGTTCCACGGTAGGCGATCA-GTGTAATACTACAAGTGTACATACTATGAGAGTATGAGTTGCCTCTTGTTGT
GCAGGAGTTGTGTCCATCAAAATAGAGCTGGGGATGAAGACGGTGACCGTGGTTGGCAACGTGACCCCCATGCAAGTCCT
GGAGACCGTCTCCAAGGTGATCAAGTACGCGCACATTCTGCCGCCGCCCTAGCGATGCTGTTTCCCGGTCCACTGTGTGG
TGATTGCACTTTTCTTTGATGAAAACGATGAGCGCTATCCCTCTTTTCTCCCTTCTTCTTTTTTTTTAAACATTTTCTCC
CTTCTTCTTTTAGCGCTCAATCTGTATCCCGAAAACAGAAAATCATATGTAGATTGCCATTTGAGGAGCCACCCGTGTCC
TGGGCTCCTGGCAACTCGATAGTCTCATCTTTATCTTTACCTAATAATAAAGCAAATTGAGTTTTTTTCGTCTGTCATGA
CATTTTTCAAAAATGTCCCTCTATTTCAGAGAATTCAACCCGCTGTCCTGTGTTAAGTTAAAACGACGTTATTTTCATAT
TTTATACAATAGTCTCTGTCTTTTCTTAAAATCAACCCGCCATCCGGATTTAAGTCACACCTAAGCCGTTATTTTACATT
TTTCGAAATCCCTCCTGATGTTTTAGGTAATTCATCTATGGATCATATTTAAGTCAAACAAATGCTTTTTAAAATAATCC
ATATCTTTTAGACCATAACTCCGATTTGAACATGTTATATATGTAATTTGATTAGAAAAATATATAGAATATGAATATGA
TATTATTTTTACCTGTTAAGTATTTTTAAATATTGTTTTAGAATATATTTGAGTCAAACCAAATGATTTTCTAAATTATC
TGTATCTTTTAAATCGTAACTTCGATTTTAACATATTATATATGAAATTTTATTAGAAAAATATGTGGAATCTAAATATG
ATGTTAATTTTACCTGTTAAATATTTTTAAAATATTGTTATGAAAACAAACTTATAATTTATAGCGCAAGATTTTTTTAT
ACCGATGATGATCCGGATTGCAAATAAACACCCTACTATAACCATGTAAAAAAAAGAAAACATCGATAACTACACATGCA
TACCTCTGAAAAATATCGCAGGGGAAAACAACATATTTCTCATCGCAAGAGTGAGAGAGAGAAAGCGAGCGAGAGAGAGA
GAGAGAGGAAGGAGAGAGAGAGGAAGGAGAGAGGGAGAGAGAGACGCCTTAGGATTAACCATATTCAACACACGTTTTTT
GTTGTTTTGTGTGAACACCGAGGCTATCGCCGGCGAGGGTGAGAAGAAGGATAAGCGGCAACACAAATATGATGCCTCGC
AAAAATAAAGGAGATGGACCTATTGTGGTCTTGAGTGATGGTTGTTGAGTTAAGAGCGTGTGTTATGTTTTCTCTCCCAT
TGCAGCGCACGGGCTCTTTTGCTAGTCAATCTAAAATATGTTGTTTGTGGCAGACTCAGCCCACCATCAGGGTTTACTTG
TGCTTGCA-CTTTTCTGAATTTATTTCATACTTCCGGTGATGTTCGTTCAGTGGGAGAGGGGAGACGTTTCTGTCGACTA
TGAAGACGCGTGCGATGACTTCGTCAATCTCAAAATGATGTGTCGGCTTTATCTCACAAAGGTGCTCATAGGGGTAGGGC
GTACGTTTGTGCACATAGGATGAGTGTATGTTCGTATATATGAGCGTCTATGTTGGTGCCGTGTTAAAAATAATCTCAAA
AAATGTATTCCGTGTTAGGTCATCTCCAACGCTGAC--------------------------------------------
--------------CCTCGAATCACACGCATCCGTCTGGACCGAGTGGTCCGGACGCATTTTGACATCCAACACGGTACC
TCATCGATCCGTGGACCGATTCGGACGTCCGTTTTCCCGCAAACTAGGGGCAAAGCAGGGAGCTTTATGGGCGTATGGAC
CACTGCCATGCACGCGCCAAAAACTTGGACGGGACTGCATAAACAATCCAATACAACGTGTCGCACACCTC---GGTCAC
ACACCTCGTCGATCACCACATAGTGGAACCACATGCCGTTCCTGTGGGCTGCATAAACAATCCAATACAACGTGTCG---
--CTCCGTGGAGATACCGACGACTTCCTCAGACTTTACGCCATTATATGCATTGATGTCCACTTGTATCTTTGGACAATA
GCTGGGTTGTCTGACTCCTATATTTACTCCCTACATTTCCGCTTGTTTGGCTAAGGGTGTACCGGGAACACTTCTATGAT
TGTTATTTCTGGTTGAACCAGTTAAGTACTTTAGGT
>chr3B_1
TTCTTCTCTGCTCTGCAAACTCATTGTGACATGCGCTCAACTTATGCAGGCCCTGTTGTAGGCCCTTTGTGATCTCTGGT
TATGATCTGAGCATTTTGGGTGGCTTGGTGTCCTAAATTATATTAGGTACTGTTCTGTTCTGGCATTTTTGGTTGTTAAC
TTTCCAAGATAAATGCATTTTAAGTGAGCAAGGCACCGTTCCTCCGAGATGTTCCCCCTTTTCTCTGGTTCTCTCCTTTA
CCCTTCTATCCCCCGCATGCATTATCTCCCAATCATGTAAATCCTGATTTGGAGGTTGGATACCTGGGTTAACTATGATT
TATGTTGTGGCAGGTCTTATAGATGCCTGCTCGTGCTGTAGTTATCTGATGGGGGTCGCTTCACAGCAGAGCAGGGGGTG
CATTTGTTGCTTGAGTTGTGGTAAGCCTGTTTTTCAGGAGCAGCGA---AGAAATGCACTTTAGAGTTTTGGTGAGAATG
CAACTAATTGCACATCATGAAATTTTAGGTGTTGCTTGGTCGAAATGGCTAATTTGTTGGTGGCATCTGAAGACGTGAGC
GGTTGTTGAAGAGAGGTTTGAATAATGATCTGTGTTGATTGATAAAGAAAGGCAAGAATGGCTTTTAGTACATTTTGTTA
GTGACTCGAGTTTATGTCGGTCTGAGTTCTGATGTACCTATGTATCTATCCTCCAATAGTGGTATTGGCAAGAGCAAGTG
GCTTTGTTGCTGCAGTTTGTATCTTTTGGAGTATGTGGGAATGTGGGTGAGATTTGTCAATTTTGTGCCTGATGAGTGCC
CAATCGATTGTGTTCAATTGTGTGCTACTCCCTCCGTCCGAAAATACTTCCAGATTCCAAATGAAGAAATGGAAACTCGA
AAAGGATCCTTCTGATTCTTAAAGAATGAGTCATCAAAATGGACAAAAAGGATGTATCTAGAACTAAAATACATCTAGAT
ACATCTCCTTTTATTCATTCTGATGACAAGTATTTTCTTTATTCATTCTGATGACAAGTATTTTCGGACGGAGTATTTCC
GGACGGAGGGAGTACTTCGGTTCGATATTATCACATTACTAAATTGACGGCAGT-TTGTCTTAGTCACAACCA-AATCAT
TCAACTGCTCGCCTAACCGTTTAGTTGGACGGATGGATCTACCAGCGACTT-GCTGAGGATCTTTTCTTCTAGGTTGGTG
GTTGATCTAA---GTATCCCTGATAATATTGGTTGCCTGATGCATGTAGATTAGCACATGACGCGCCTGCAGTACCTCTA
TATGTGAGTGACATTCATATCCCAGTAGACATGGCTTCAACGATGGGTTTGAACAAAGCTCTGCGTTGGCTGCCACGTTC
CTCTGCCAGTCCCCGTCTGGAGGAAGACGAAGACAACAACGAGAGGAACGGGCTGCTGAGGAGCCACCGGGATCAGAACC
GGGTGGTGCCCGTGACGGGTCTCCATGTTGACGAGCAACCCGAGGCAGGTGCGCATGTGGAGCCCAAGGTAAGCTAGCGC
TTGATTCCGGAAATGCAAGCGGAA------ATTTACCTCAAGACGTGGCCGTAACTTGTGGCACCTAATGTTTCCCTTGC
ATTGGCATGGCATGGCGCAGACCGTGGCCCTGAAGGTGTCGATGCACTGCCATGGCTGTGCGAGGAAGGTCGAGAAGCAG
ATCTCCAAGCTCCACGGTAGGCGATCAAGTGTACTACTACAAGTGTACATACTATGAGAGTATGAGTTGCCTCTTGTTGT
GCAGGAGTTGTGTCCATCAGAATAGAGCTGGGGATGAAGACGGTGACCGTGGTTGGCAACGTGACTCCCATGCAAGTCCT
GGAGACCGTCTCCAAGGTGATCAAGTACGCGCACATTCTGCCGCTGCCCTAGCGATGCTGTTTCCCGGTCCACCGTGTGG
TGATAGCACTTCTCTTTGATGAAAACGATGAGCGCTATCCCTCTTTTTTCTC----------------------------
---CTTCTTTTAGCGCTCAATCTGTATCCTGAAAACAGAAAATCATATGTAGATTGTCATTTCAGGAGCCACCCGTGTCC
TGGGCTCCTGGCAACTCGATCGTCTCA-----------------------------------------------------
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-------------------------TCAATCTGAAATATGTTGTTTGTGGTGGAATCAGCCCACCATCAGGGTCTACTTG
TGCTTGCATTTTTTCTGAATTTTTTTCAGACTTCCGGTGATGTTTGTTCAGTGGGAGAGAGGAGACATTTCTGTCGACTA
TGGAGAGGCGTGCGATGACTTCGTCAATCTCAAGATGACGTGTCGGCTTTATCTCTCAAAGGTGCTCATAGGGGCAGCGC
GTATGTTCGTGCGCATAGGATGAATGTATGTTCGTATATATGAGCGCCTATGTTGGTGCCGTGTTAAAAATAATCTCAAA
AA-TGTTTTCCGTCTTAGGGCATCTCCAATGCTGATCCTCGTGTTAAAAATAATCTAAAAAATGTATTCGTCTTAGGGCA
TCTCCAATGCCGATCCTCGAATCACGCGCATCCGTCTGGATCGAGTGGTCCGAACGCATTTTGACATCCAACACGGTACC
TCATCGATCCGTGGACCGGTCCGGACGTCCGTTTTCCCGCAAACCAAAGGCAAAGCAGGGAGCTTTACGGGCGTCTGGAC
AGCTGCCATGCACACGCCAAAAACTCGGACGGGACGTCCATCCCAGTCATGATAGCAATCAGGATAACTCCTCGGGCCGC
ACACCTCATCGATCATCACATAGTGGAACCACATGCCGTTCCCGGGGGCTGCATAGACAACCCAATACGACGCGTCGAAG
TACTCCGTGGAGATACCGACGACTTCCTTGGACTTTACGCCATTATATGCATTGATGTCCACTTGTGTCTTTGGACAATA
GCTGGGTTGTCTGGCTCCTATATTTACTCCCTACGTTTCCGCTTGTTTGGCTAAGGGCATACCGGGAGCACCTCTGTGAT
TGTTATTTCTGGTTGAAC-AGTTAAGTACCTTAGGT
>SNPs
------------------------S-------------------------------------------------------
-------------------------------------------------------------------------------S
---------------S-------S-------S----------------------------------S-------------
----------------S---------------------------------------------------------------
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---------S----------------------------------------S-----------------------------
------S--S--------S----S-S------------------------------------------------------
-------------------------------------------S------------------------------------
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----------------------------------------------------------S--------------S------
------SS-----------------------------------------------------S------------------
---------SSS-------------S---------------------------S--------------------------
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------------------------SSSSSS--------------------------------------------------
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-----------------------------------------------------------S--------------------
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----S-------------------------------------------S-------------------------------
-----------------------------------------------------------------------------S--
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--------------------------------------------------------------------------S--S--
-------------------------------------------S-----------------------S--S---------
-------------S--------------------------------------S----S--S-------------------
------------------------------S-------------------------------------------------
------------------------------SS--S---------------------------------------------
-----------------------S--------S---------------------S-------------------------
-------------------------S--S---------S-----------------------------------------
------------S--S----------------------S-------------------SS--------------------
---------S-----------------------S----------------------------------------------
---------------S-------------S-------------S---S--------------------------------
---------------------------------------S--------------S-------------------------
------------------------------------
>forward_570
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----------------------------------------------------------------------AGACGTGAGC
GGTTGTTGAG----------------------------------------------------------------------
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>reverse_3271
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----------------------------------------------------------------------ATGTCGACTA
TGGAGACGCG----------------------------------------------------------------------
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