>input_sequence_73362
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----ATGGGTGATATAAACAAGAGGAAGAAATTAGCGCAAGAGAGTTGTAATTTTGGAATCTCAGACCTCCCGGATGATA
TGCTTGAGCACATAGTATCCTTCCTATCATTGAATGAGGCCGTGAGGACTTGTGTTCTTTCCAAGAATTGGAGCTACATA
TGGAAATTTGTGCCTACCCTACGTATTTCTGATACAATCGATAAATGTAACAACTTAATAGACAATTTTTTGCGTGGCCG
TGGAAACACCGCAATCATTGTTTGTGATATCGAGTTGACTAATCTCGAGAAGGTAGAAATGCATGACATGATAGACACAT
GGATCTTTCATATCGTGAATCTTTGCCATGTTCAGGAGCTCAGAGTCATTAGCTGTATAGAGGATGATTTCCTACAGTTC
AGGGATCAAGCTCTCATCTCCAAGCACTTGAAGAGGTTAGAGCTTGATAAGGTTTGCTTAAAAGCTAGCACTATTGATTT
CTCAAGCTGCCCTGCATTGGAAGAAATAGATCTGATGTTTTGTTGGATTGAAGCAAATTACATTATATCAAAGTCATTAA
AGCGCCTGATTGCAGTGGAATGTGAATTTGATA--GTGGGTGCACGCACTCACATTTCTGTCCCCAACCTCATCTTTCTT
AA------------------------------------------------------------------------------
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>chr6D_1_TraesCS6D01G032500
CACGATCTTCTCAGCCTCCTCCTCTCATTCAGTCCCCTCGACCATCCACGATCCCCTGTTACTACTCNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNTCCTCCACCCAGATCTACTATAT-------------------------------------------------
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-----------------------------------------------------CTCCGAGATCTCGCCCCTTCT------
---------------ACCGCCACGATCCGCTCTGTCTCCT-CTCCCTCGCCCCTCCAATCTACTCCACCTAGATCTACAC
TTCAATCGAGATCTTCTAGTGGGTGGTAGGTCTTTCCGTCATCTGACCTCCTAATCGGCATACTTTTGGAGCTACCACGC
CATGGAGCAGCACTTACCCTAATCCACTGCGCCACCCGTGGAGCACCCAGGTTATTTTTCTCCACAATTTCATCCTCTCA
TCACTATCACACCTCCCCTGATTTATTTCATAAATTGCTTGGTTTGTTCCCCCACATCACTATCACCTCCTACCAATTTG
CAGAATGGGTGATATAAACAAGAGGAAGAAATTAGCGCAAGAGAGTTGTAATTTTGGAATCTCAGACCTCCCGGATGATA
TGCTTGAGCACATAGTATCCTTCCTATCATTGAATGAGGCCGTGAGGACTTGTGTTCTTTCCAAGAATTGGAGCTACATA
TGGAAATTTGTGCCTACCCTACGTATTTCTGATACAATCGATAAATGTAACAACTTAATAGACAATTTTTTGCGTGGCCG
TGGAAACACCGCAATCATTGTTTGTGATATCGAGTTGACTAATCTCGAGAAGGTAGAAATGCATGACATGATAGACACAT
GGATCTTTCATATCGTGAATCTTTGCCATGTTCAGGAGCTCAGAGTCATTAGCTGTATAGAGGATGATTTCCTACAGTTC
AGGGATCAAGCTCTCATCTCCAAGCACTTGAAGAGGTTAGAGCTTGATAAGGTTTGCTTAAAAGCTAGCACTATTGATTT
CTCAAGCTGCCCTGCATTGGAAGAAATAGATCTGATGTTTTGTTGGATTGAAGCAAATTACATTATATCAAAGTCATTAA
AGCGCCTGATTGCAGTGGAATGTGAATTTGATA--GTGGGTGCACGCACTCACATTTCTGTCCCCAACCTCATCTTTCTT
AAGTTAACTGATATTTGGCATTATACTCCTTTATTTGAAGCCATGCCTTCACTTGAAGTTGGATATGTCAGTCTAGGCGA
GGACTGTTTAGACTATTGTAACAATAATAAATCTTGGGGATGTGATAATGTGGACTGCGGTTTTGGTTGCACTGATGGTT
ACAAATATGATAGCATTCTTCTGGAAGGTTTATCAAATGCCAGTTACTTGGAGTTGCTAAGTGAACCAAGCATGGTATGT
TTGCACTTTTTGGGCGTCCCTATTGCTCATATTTCCTTGCTCTTGCAATCTATGGTAGATTATCCACCAATTGAATTACT
TATATTGTTTTGTAACCTTTTCTATTGAAGTAACATGCAATCAAAATGTATATATGCATTACTCTAACACTAGAAACAAC
ATACATGTCGATTTCTACTATTATGTTCTAGTGGGCTGTTATTTTGGATTTGTTGGAACACCATACAAGAATATTAATCT
ATAGAGCCCTGAACACTATGTAACTTGAAACCATATATTAGAGTTATTATATTTTAAAAATTAGGACTTCTTTGCATATT
GCCAACATTGGTATGTCTAATTATTTATTAGAGATAAGAAATGCATATTTCTTTATTGCTTTCACCAATTTACTATAATC
AACTTTGGCTATTACATGTTTCAATACTAGAACACATGGCTTTCCACACTTGCATATACTTAATACACCTAAAAATACAT
CATTCTTATTCTCTTTTATCTAGTTCATTTTTGATAGGGATTTGCGGCGATGCCCTACATTTCGAAACTTGAGGACACTG
ATACTCAATGAATGGTTTTTGGTTGCTAACCTCCATGGACTTGCACGCGTTCTTCGCAACTCACCTATTCTAGAGGAGCC
GAATCTCCTACTTTTAGAGGTATGGCCACTATGACTATATCTTTTCTGAAAATTGATTGTCGGTCGATAACATTTATGAA
TTTATTTGTCTACTCTAGGAGCCTAAAGAGGTGGTCGAATCT
>chr6B_1
CACGATATTCTCAACCTCCTCCTCTCGTTCAATCCCCTCGACCATCCACGATCCCCTGTTACTACTCCTCCCCCCTCCCC
TCAACCC-------------------------------------------------------------------------
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---------CCTTCACGAAGATCTACTCTGCCGCGGTGATCTTCTTCCTCCTCCCTACTTCCCCTAGGCCCCGATCCCAT
CCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTCCGAGATCTCGCCCCTTCTCCGCAT
ACCCCAATCCCCTCTACCGCCACGATTCGCTCTGTCTCCTCCTCCCTCGCCCCTCCAATCCACTCCACCTAGATCTACAC
TGCAATCGATATCTTCTAGTGGGTGGTAGATCTTTGCGTCATCTGACCTCCTAACCGGCATACTTTTGGAGCTACCACGC
CATGGAGCAGCACTTACCCTAATCAACTGCGCCACCCGTGGAGCACCCAGGTTATTTTTCTCCACAATTTCATCCTGTCA
TCACTATCACACCTCCCCTGATTTATTTCATAAATTGCTTGGTTTGTTCCCCCACATCACTATCACCTCCTACCAATTTG
CAGAATGGGTGATATAAATAAGAGGAAGAAATTAGCGCAAGAGAGTTGTAATTTTGGAATCTCAGACCTCCCGGATGATA
TGCTTGAGCACATAGTATCCTTCTTATCATTGAATGAGGCCGTGAGGACTTGTGTTCTTTCCAAGAATTGGAGCTACATA
TGGAAATTTGTGCCTACCCTACATATTTCTGATACAGTGGATAAATGTAACAGCTTAATAGACAATTTTTTGCGTGGCCA
TGGGAACACCGCAATCATTGTTTGTGATATCGAGTTGACTAATCTCGAGAAGGTAGAAATGCATGACATGATAGACACAT
GGATCTTTCATATCGTGAATCTTTGCCATGTTCAGGAGCTCAAAGTCATTAGCTGTATAGTGGATGATTTCCTAAAGTTC
AGGGATCAAGCTCTCATCTCCAAGCACTTGAGGAGGTTAGAGCTTGATAAGGTTCGCTTACAAGCTAGCATTGTTGATTT
CTCAACCTGCCCTGCATTGGAAGAAATAGATCTGATGTTTTGTTGGATTGAAGCAAATTACATTATATCAAAGTCATTAA
AGCGCCTGATTGCAGTGGAATGTGAATTTGATAGTGTGGGTGCACGCACTCACATTTCTGTCCCCAACCTCATCTTTCTT
AAGTTAACTGATATTTGGCATTATACTCCTTTATTTGAAGCCATGCCTTCACTTGAAGTTGGATATGTTAGTCTAGGCGA
GGACTGTTTAGACTATTGTAACAACAATAAATCTTGGGGATGTGATAATGTGGACTGCGGTTTTGGTTGCACTGATGGTT
ACAAATATGATAGCATTCTTCTGGAAGGTTTATCAAATGCTAGTTACTTGGAGTTGCTAAGTGAACCAAGCATGGTATGT
TTGCACTTTTTGGGCATCCCCATTGTTGATATTGCCTTGCTCTTGCAATCTATGGTAGATTATCCACCAATTGAATTACT
TATATTGTTTTGTAACCTTTTCTATTGAAGTAACATGCAATCAAAATGTATATATGCATTACTCTAACACTAGAAACAAC
ATACATGTCGATTTCTACTATTATGTTCTAGTGGGCTGTTATTTTGGATTTCTTGGAACACCATACAAGAATATTAATCT
ATAGAGCCCTGAACACCATGTAACTTGAAACCATATATTAGAGTTATTATATTTTAAAAATTAGGA-TTCTTTGCATATT
GCCAACATTGGTATGTCTAATTATTTATTAGAGATAAGAAATGCATATAGTTTTATTGCTTTCACCAATTTACTATAATC
AACTTTGGCTATTACATGTTTCAATACTAGAACGCATGGCTTTCCACACTTGCACATAATTAATACACCTAAGAATACAT
CATTCTTATTCTCTTTTATCTAGTTCATTTTTGATAGGGATTTGCGGCGATGCCCTACATTTCGAAACTTGAGGACACTG
ATACTCAACGAATGGTTTTTGGTTGCTAACCTCCATGGACTTGCACGCGTTCTTCACAACTCACCTATTCTAGAGGAGCT
GAATCTCCTACTTTTAGAGGTATGGCCACTATGACTATATCTTTTCTGAAAATTGATTCTTGGTCGATAACATTTATGAA
TTTATTTGTCTACTCTAGGAGCCTAAAGAGGTGGTCGAATCT
>SNPs
------S------S------------S----S-----------------------------------SSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSS---S---SS---------S-SS-------------------------------------------------
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--------------------------S---------------------------------S-------------------
-S-------S-------------------S-----S------------------S-------------------------
------------------------S---------------------------------------------------S---
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------------------S-------------------------------------------------------------
-----------------------S--------------------------------------------------------
----------------------S-------------S-S-------------S--------------------------S
---S----------------------------------------------------------------------------
------------------------------------------S-----------------S-------------S-----
-------------------------------S----------------------S-----S---------S-S-------
-----S--------------------------------------------------------------------------
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--------------------------------------------------------------------S-----------
------------------------S-------------------------------------------------------
----------------------------------------S---------------------------------------
---------------S----S----S-S-----S----------------------------------------------
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---------------------------------------------------S----------------------------
----------------S-------------------------------------------------S-------------
------------------------------------------------SSS-----------------------------
---------------------------------S--------------------S---S-------------S-------
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--------S----------------------------------------------S-----------------------S
----------------------------------------------------------S-S-------------------
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>forward_27
-------TTCTCAGCCTCCTCCTCTCA-----------------------------------------------------
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>reverse_2006
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-----GCTGCCCTGCATTGGAAGAA-------------------------------------------------------
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>forward_1883
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-----------------------TGCCATGTTCAGGAGCTCAG-------------------------------------
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>reverse_3016
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-------------------------------------------------------GCAACTCACCTATTCTAGAGGAGC-
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