>input_sequence_73354
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----------------------------------------------------------ATGTATAATCAGCTGAAGCGTC
TGCATTCCTTACCAGGAAATCTAGAGACACTACATCTAAAAGATCGCATGCCTACTATTCCAAACTGGATTGGTCAACTC
GGTAATCTGTATGACATAAATCTTTATGGAATCGAGAGGT--------TGAACCCGCAAGGTATTGATATCCTTGCAAAG
TTGCCAGCCCTTCTCTACCTCAAGATGTACATCCCGATACGCATCGCTGAAACAATCGTCATCCGTTGTGGGAGTGGGAG
TGGGAGTAGGGCAGCTTTCCCAGCACTCAAGCATTTCAACCTCATTTGTTCGCCGCCATGGGTGGCTTTTGAGCAAGGGT
CAATGCCCAAGCTCCAGAGACTCGAAATAGAATTTGAGGCGGACAGATGGGAGGAACGTGGAAGAGCACCTGCAGGCATT
CACAACCTGGGTGAGTTGCAGGTAATCTCGGTACAACTGATGTACGGTGGTGAGGAGTCTGACAAGGAAGCTGCTAAATC
TGCGCTGCGTGGTGCAATCGACGGCCATCCATGTGACCCTCGTGTTGACATCAGCCAAGGAACAGAACGTCCCTATGG--
-TATTTATACGGAGGAGCAATATAGGCATCTCAATT---TGGA------CGATGATATGGACATCTCCGACTGA------
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>chr5D_1_TraesCS5D01G300500
CCTGAGCTACATGCATCTTCCTCATCATTTGAGGGCATGCTTCCTTCATCTTGGTATATATCCAGAGGACCGGAAGATCA
TGACAGATGATTTGGTGAAGCAATGGGTTGCTGAAGATTTTGTGCCTTGCTGCCCACATAGGCGAGATCGAGAGGATGTT
GCAAGGGGCTATTTCAATGAGCTTGTCAACAGGAGCATCCTCCAACCTGTAGATATAGACTACAAGGATGAGGTGATGTC
ATGTCGATTACATGACATGATGCTCGAGTTCATCTTGGACAAATCCGCGGATGAGAATTTCATTACTGTAATGGATAAAT
TTGGAGTCCGGAGTGGAGGCACCAGTAAGATCCGTCGGCTCTCTCTGCAATCTGACCAAGAGAATCATGTCTCGGTACCA
GGAGCAATTACTCTGACACAAGTTCGATCGCTTGCAACATTTGGTTATTCTGGTGATTCTGTTGACAGGGTATGCTCAAG
GCTAAAGTTTGTTCGAGTCCTAGTGGTTGAAGGACGTGGTATCACTCTGGACGACATGGCTGGAGTTTGCCTGCTGCTCC
AGCTGAGATACCTGAAGATTACTTCTCATA---TGGATTATGAGGATGATGCAGTACTACTACCTCCTGAAATTCTGAAT
CTACGGTTTCTGGAAACGCTGGATATAGCAGATGTGTATGATG---CTACCCTTCCAGAAGAAATAGCTCACTTGTCCAG
CTTGCGGCATCTGCTTCTCCCATCAGAGGTAGTCTTGCCTGATGACATAGGCCGTATGAAGTCCCTGCGTACCATACGCA
AGTTTGATATGTCCCAGAATTCCGTAGCCTGTATAAACGGCCTCGGG------ACCAATCTCAGAGATCTTGAACTCTGT
TTTGATACAGACACTTGCTACCCTGGCGAGGG------CAATGTAGCTCTATGCTCTGCTCTCCAAAAGCTTGCTGGTGA
AAACCTTAAACATCTAGCTATCGTTTCGGAAGATATGTAAGGCGACCAATCTCTACCAATGTATAATCAGCTGAAGCGTC
TGCATTCCTTACCAGGAAATCTAGAGACACTACATCTAAAAGATCGCATGCCTACTATTCCAAACTGGATTGGTCAACTC
GGTAATCTGTATGACATAAATCTTTATGGAATCGAGAGGT--------TGAACCCGCAAGGTATTGATATCCTTGCAAAG
TTGCCAGCCCTTCTCTACCTCAAGATGTACATCCCGATACGCATCGCTGAAACAATCGTCATCCGTTGTGGGAGTGGGAG
TGGGAGTAGGGCAGCTTTCCCAGCACTCAAGCATTTCAACCTCATTTGTTCGCCGCCATGGGTGGCTTTTGAGCAAGGGT
CAATGCCCAAGCTCCAGAGACTCGAAATAGAATTTGAGGCGGACAGATGGGAGGAACGTGGAAGAGCACCTGCAGGCATT
CACAACCTGGGTGAGTTGCAGGTAATCTCGGTACAACTGATGTACGGTGGTGAGGAGTCTGACAAGGAAGCTGCTAAATC
TGCGCTGCGTGGTGCAATCGACGGCCATCCATGTGACCCTCGTGTTGACATCAGCCAAGGAACAGAACGTCCCTATGG--
-TATTTATACGGAGGAGCAATATAGGCATCTCAATT---TGGA------CGATGATATGGACATCTCCGACTGAGCACAA
ATAGCGGTATGGCTTATTTCATCCTCCCAGT------------CAGCTGTAAATCTCTTTTCTTTCTTCT------AGTA
GTATGAACGATCTGGAAGCTAG----------------------------------------------------------
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------------------GTATTAGTACAACG-GATTGATTACACTCATTGCTAGCATACTATACTAGTA----TGTTTA
AAAGAAAATCTCTAGTGCCACATAT--------TAC----AAGTAATCTTTTATAACATGGCCATCAAAACACTGATAAT
CATGCATATTGCAGTGTTTTTAAAACCTCAACGTGTTACCAGATTTCACTATGTACTTCATGTTTCCGGTTTA-------
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---------------------------------ACCTTTAGTGCATCCGTAGTTATCACAGTTGT----TACCTTCCTGA
CATGCATGGTGAACCATGAGCCGGCATTGCGCTTCAAGGGTG----ATTAATTGACGCCCTTGCAGT-----TGTACAGA
AATCTCTCCGTGATGGGAATAAAAACCCTGTGTATCACATCCAGCTAGGCCACTTAGCTCAGCTTAGCCAGATGAGTAAG
TCCCTCCAATTCACCAGAAAAATTATTCATCCCTT-AGAGACAATGTTGTTATAAGCTCATCGATGAAGCCAGCTAGGAA
CGCTACTTCAGCAAATACTAGGATCAGATTAGTAGCAAAAGGATATGAGGCTAGAACATATTGTACTACTGAGTTGCAAT
AGCTTTTTTTTGTTAGCATGCTATGTTTGTTTACAATGATCACAATTCTCATACTAATTTTTACTTTGTAGGTCAGCAAG
ATTTTGTGCAACATTGCCCCGGCTGCCGCATGTATTTGTTTCCCATCCTTAAATCCTAAGTAGGAAAATATCTAAAAGAT
AGTATGAAAAAGTTGGAAAAACAAAAAG-TAGAAAAAGATGTGTATGTGTGTGTGC--ATTATATATGTTGTTCCTTCAA
GATCAAAAGACAAAA--AAGGAATTCAAAAAGTAAAAGCACAAAAAAAATTAGAAAAAGGGTATGTGCATATATGTGCTA
CTATTTCAGTATCTTTTTCAAAAGGTGAAAATGGCGTCAAAGCA
>chr5A_1
CCTGAGCTACATGCATCTTCCTCATCATTTGAGGGCATGCTTCCTTCATCTTGGTATATATCCAGAGGATCGGGAAATCA
TGACGGATGATTTGGTGAAGCAATGGGTTGCTGAAGATTTTGTGCCTTGTAGCCCACATAGGCGAGATCGAGAGGATGTT
GCAAAGGACTATTTCAATGAGTTAGTCAATAGGAGCATCCTCCAACCTGTAGATATAGACTACAAGGATGAGGTGCTGTC
ATGTCGATTGCATGACATGATGCTCGAGTTCATCTTGAACAAATCCGCAGATGAGAATTTCATTGCTGTAATGGATAGAT
TTGGGGTCCGAAGTGGAGGCACCAGTAAGATCCGTCGGCTCTCTTTGCAATCTGACCAAGAGAATCGTGTCCCGGTACCA
GAAGCAATTATTCTGACACAAGTTCGATCGCTTGCAACATTTGGTGCTTGTA---------TTGACGGAGTATTTTCGAG
GCTGAAGTTTATTCGAGTCCTAGTGGTTGACAGATGTCGTATGACTCTGGACAACATGGTTGGAGTTTGCCTGCTGCTCC
AACTGAGATACCTGAAGATTGCCTTTGATATGTTGGATGATGAGTTTGATCTAGTAG---TACCTCCTGAAATTCTGAAT
CTACGGTCTCTGGAAACGCTGGATATAACAGATGTCCAGGATG---TTACCCTTACAAAAAAAATAGCTGACTTGTCCAG
CTTGCGGCATCTGCTTCTCCCATTAGAGGTAGTCTTGCCTGATGACATAGGCCGTATGAAGTCCCTGCGTACCATACGCA
AGTTTGATATGTCTAAGAACTCAGTAGCCTGTATAAACGGCCTCGGGGAGCTGACCAATCTCAGAGATCTTCAAGTCCGT
TTTGAT---GACACTTGGAACTCTGACCAGAAAAAG------GTAGCTCTATGCTCTGCTCTCCAAAAGCTTGCTGGTGA
AAACCTTAAACATCTAGCTATCATTTCGGAAGATGTGTGCGGTGATCAATGCCTACCAATGTGTCATCAGCTGAATTATC
TGCATTCCTTAACAGGAAATCTAGAGACACTCCGTCTAGAAGATCGCATGCCCACTATTCCAAACTGGATTGGTCAACTT
GGTAATCTGTATGACATAAATCTTGCTGGAATCGAGAGGTCGAGAGGTTGAATCCGCAAGCTATTGATATCCTTGCAAAG
TTGCCTGCCCTTCTCTACCTCAAGATGTATATTTTGATATTCATCGCTGAAACAATTGTCATCCGTGGTGGGAGTGGGAG
CGGGACT------GCTTTCCCAGCACTCAAGTATTTCGACCTCATTTGTTCGCCACCATGGGTGTCTTTTGAGCAAGGGG
CAATGCCCAAGCTCCAGAGACTCGAAATAGAATTTGATGCGGACAGATGGGAGGAACATGGAAGAGCGCCTGCAGGCATC
CACAACCTGGGTGTGCTGCAGGTACTGTCGGTACAGCTGATGTTCAGTGGTGCGGAGTCTGACAAGGAAGCTGCTAAATC
TGCGCTGCGTGCTGCAATCCACGGACATCCACGTGACCCTCGTGTTGACATCAGCCAAAGAAATTTTTCAGTACCTTTCT
CTATTCATACGGAGGAGCAATATAATATGGAATTCATTTGACCTCTCATCGATGATACGGACATCTCTGACTGAGCACAA
ATAGCGGTACGGCTTATTTCTTCCTCCTAGTTACCTCCCACGGCAGCTGTAAGTCTCGTTTATCTG--------------
GTAGGAACAATCTGGAAGCTAG----------------------------------------------------------
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------------------GTATTGGTACAACA-GATTGATTACACCCATTGTTAGCGTACTATACTAGTA----TCTTTA
ACAGAAAATTTCTAGTGCCACATATTTCCATTCTAC----AATTAATCTTTTATAACATGGCCATCAAAACTCCGATAAT
CGTGCATATTGCAATGTTTTTAAAACCTCACCGTGTTACGACATTTCACTATGTACTTCGTGTTTTCGGTTTA-------
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---------------------------------ATCTTTAGTGCATCAGTAGTTAATCAC--AGTATTATACCTTCCTGC
C-----------------------------------------------------ACGCCCTTGCAGT-----TGTACAGA
AATCTCTCCGTGATGGGAAAT-----CCTGTGTATCACATCCAGCTAGGCCACCTAGCTCGATTTAGCCAGATGAGTAAG
CCACTCCAATTCACCCGAAAAAATCTTGATCCCTTCAGAGACAATGTTGTTATAAGCTCATCGATGAAGCCAGCTAGGAA
------------------------CAGATTAGTAGCAAAAGGATATGAGGCTAGAACATATTATACTACTGAATTGCAAT
AGCTTTTTTTTGTTAGCATGCTATGTTTGTTTACAATGATCACAATTCTCATATTAATTTTCACTTTGTAGGTCAGTAAA
ATTATGTGCAACATTGCCCCGGCTCCCGTGTGTATTTGTTTCCCATCCTTAAATCCTAGGTAGCTAAATATATAAAAGA-
--TATGAAACAGTTGGAAAAACAAAAAA-TAGAAAAAGATGTGTATGTGTA--TGC--ATTATATATGTTGTTCCTTCAA
GATCAAAAGACAAAAAAAAGGAAATCAAAAAGTAAAAGCACAAAAAAATT-AGGAAAAGGGTATGTGTGTATATGTGCTA
CTATTTCAGTATCTTTTTCAAAAGGTGAAAATGGCATCAAAACA
>chr5B_1
CCTGAGCTACATGCATCTTCCTCATCATTTGAGGGCATGCTTCCTTCATCTTGGTATATATCCAGAGGATCGGGAAATCA
TGACGGATGATTTGGTGAAGCAATGGCTTGCTGAAGATTTTGTGCCTTGCAGCCCACATAGGCAAGATCGAGAGGACGTT
GCAAGGGACTATTTCAACGAGTTAGTCAACAGGAGCATCCTCCAACCTGTAGATATAGACTACAAGGATGAGGTGATGTC
ATGTCGATTACATGACATGATGCTCGAGTTCATCTTGGACAAATCAGCGGATGAGAATTTCATAACTGTAATGGATAAAT
TTGGAGTCCGGAGTGGAGGCACCAGTAAGATCCGTCGGCTCTCTTTGCAATCTGACTACGAGAATCATGCCTTGGTACCA
GGAGCAATTATTCTGACACAAGTTCGGTCGCTTGCAACCTTTGGTGCTTGTG---------TTGACGGAGCGTTCTCGAG
GCTAAAGTTTATTCGAGTCCTAGTGGTTGACCAAGGTAGTATGACTGAGGACGACATGGCTGGAGTTTGCCTGCTGCTCC
ATTTGAGATACCTGAAGATTATTTCTTATACAATCCATGGGTA---TGATCTAGTAG---TACCTCCTGAAATTCTGAAT
CTATGGTCTCTGGAAACGCTGGATCTAAGAGATTTCGATGGCATACCTACCCTTCCAGAAGAAATAGCTCATTTGTCCAG
CTTGCGGCATCTGCTTCTCCCATCAAATGTAGTCTTGCCTGATGACATAGGCCGTATGAAGTCACTGCATACAATACGCA
GTTTTGATATGTGCAAGAATTCCGTAGCCTGTATAAACGGCCTCGGGGAGCTGACCAATCTCAGAGATCTTCAACTCCGT
TTTGAT---GACACTTTGTACGACTCTGACAAGGGCAACAATGTAGCTCTATGCTCTGCTCTCCAAAAGCTTGCTGGTGG
AAACCTTAAACATCTAGCAATCGTTTCGGAAGATCCATGCGGCAACCAATCTCTACCAAGGCGTCATCACCTGGATTGTC
TGCATTCCTTACCAGGAAATCTAGAGACACTACATCTACAAGATCGCATGCCTACTATTCCAAACTGGATTGGTCAACTC
GGTAATCTGTATGACATAAATCTTGAAGGAATCGAGAGGT--------TGAACCCGCAAGGTATTGATATCCTTGCAAAG
TTGCCCGCCCTTCTCTACCTGAAGATGTATATCTCGATATGCATCGCTGAAACAATTGCCATCCGTGGTGGGAGTGGGAG
TGGG------GCCGCTTTCCCATCACTCAAGTATTTCCACCTCATTTGCTCACCGCCATGGGTGGCCTTTGAGCAAGGGG
CAATGCCCAAGCTCCAGAGACTCGATATAGAATTTGAGGCGGACAGATGGGAGGAACGTGGAAGAGCGCCTGCAGGCATC
CACAACCTGGGTGCCTTGCAGGTACTCTTGGTACAACTGATGAACGGCGGTGAGGAGTCTGACAAGGAAGCTGCTAAATC
TGCGCTGCGTGCTGCAATCGACGGCCATCCACGTGGCCCTCGCATTGACGTCAGCCAAGGATCTTA------CTATCA--
-TATTTATACGGAGGAGGAATATAATACAGTTTTCAAAATGGA------CGATGATATGGACATCTCCGACTGAGCACAA
ATAGCGGTATGGCTTATTTCATCCTCCCAGTTACCTCCAGTGGCAGCTGTAAATCTCGTTTCTTTCTTCTACTCCTAGTA
GCAGGAGCTATCTGGAAGCTACTACCTCCGTCCTGGTTTATTGGTCCCCTTCGTAATTTGTGTCAAATTTTGATCATAAA
TTTAACTAACAAAATGTTAATGCATGTCACAAAAAATTATATCATTTGATTCGTATTTAAACATAGTTTCCAATGGTATA
ATTTTCGGTGACATGCACTGACATTTTGTTAGTTAACCCTATGGTCAAAATGTGACACTAAATACAACCAATAAACCAAG
ACGGAGGTAGTAGGTATAGTATTAGTACAACGGGATTCATTATGGCCATTGTTAGCGTACTATACTACTAGTATTCTTTA
ACAGAAAATTTCTAGTGCCACATATTTCCATTCTACAATTAATTGATCTTTTATAACATGGCCTTCAAAACACTAATGAT
CGTGCATTTTGCAGTGTTTTTGAAACCTCACCGTGTTATGACATTTCACTATGTACCTCGTGTTTCCGGTTTCTATATCT
ATACTCCTATATAGTGCATCAGTTTTGAACTTCAAACTCACTTCTCAGAATATTCAATCACAGCCGTTAACTATGTTGAT
CTGACCATTGAGAACCCCTGGATTCGCCTTCTACAGTAGCTGGTGCCTTTTCTACTATCTTCCAGAACAATCCTGGCGTT
GTGCCTCTGCATGCTACTTTTTAGTCAACAAGTAGCCGGATCTTCTATGGCTTGAAAGGAAAGCAGTGGCTTGACATGTT
GATGTTGAAGTTAATACAGATGTGTTGGCTCTTTGTACTTTATTTAGGAAAATAAAACTGTGCGTAGGAGATACTTACCG
CGATAGGATTGGGCTCCTCTCAATTTTGCCCCCAGTAATTGCTTTTTATATGGAATTAGGATGCGGCTTCCTGTACGTAA
AACTTTCTTCTGTTCTTGTGTTTGGAATGAGTTTTTTTTTAGTAACTAAGGATCATTATCTTAATTGCTGAGCACGGGGC
ATATAATCAATTAGTAAAGTTTGTCCAGTAGTTATCTTTAGTGCATCAGTAGTTATCACAGTAGTATTATACCTTCCTGC
CATGCATGGTGAACCATAAGCCGGCATTGCGCTTCAAGGATGGTTAATTAATTGACGCCCTTGCAGTTGTACTGTACAGA
AATCACTCCGTGATGGGAATAAAAAACCTGTGTATCACATCCAGCTAGGCCACTTAGCTCAGTTTAGCCAGTTAAGTAAG
CCACTCCAATTCACCGGAAAAATTCTCGATCCCTTCAGAGACAATGTAGTTATAAGCTCGTCGATGAAGCCAGCTAGGAA
CGCTACTTCAGCAAACACTAAGATCAGATTAGTAGCAAGCGGATACGAGGCTAGAACATATTGTACT-CTGAGTTGCAAT
AGCTTTTTTT-GTTAGCATGCTATGTTTGTTTACAATGATCACAATTCTCATACTAA-TTTTACTTTGTAGGTCAGCAAA
ATTTTGTGCAACATTGCCCCGGCTGCCGTGTGTATTTGTTTCCCATCCTTAAATCCTAGGTATG--------TAAAAGA-
--TATGAAAAAGTTGGAAAAACAAAAAAATAGAAAAAGATGTGTATGCGTG--TGTGTATTATATATGTTGTTCCTTCAA
GATCAAAAGACAAAAAAAGGGAATTCAAAAAGTAAAAGCACAAAAAAAAT-AGGAAAAGGGTATGTGTGTATATGCACTA
CTATTTCAGTATCTTTTTCAAAAGGTGAAAATGGCATCAAAACA
>SNPs
---------------------------------------------------------------------S---S-S----
----S---------------------------------------------S-----------------------------
-------S-------------S-S--------------------------------------------------------
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--------------------------------------------S-----------------------------------
----------S----------------------------------SS--S--SSSSSSSSS-----S-S----S---S--
----------S-------------------SS--S--S----S-------------------------------------
-S------------------------S-----------S-----SS----SS----SSSS--------------------
-------S-------------------S-------SS-------------------------------------------
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--------------S--------------------------------------------------------S-----S--
------SSS--------S---S---S----SS------------------------------------------------
----------------------------------S---SS----------------------S-S----------SS---
--------------------------------------S-----------------------------------------
------------------------S-------------------------------------------------------
-----S-----------------------S---S-----S----------------S---------S-------------
-----S-SSS--S------------------S-----S-----------------------------------------S
-------------------------------------------------------------------S-----------S
-------------S----------S-------------------------------------------------------
-----------S-------------------S-------------------------------SS-SSSSSS----SS--
------------------------SSSSSS-SSSSS--------------------------------------------
---------------------------------------------------------S----------------------
---S----S-----------------------------------------------------------------------
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---------------------------------------------S-----S----S------------------S----
-S-------S--------------------------------S-------------------------------------
-S----------------------------S--------S-S-----------------S--------------------
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----------------------------------S------------S--------------S----------------S
-----------------S---------------------S----------------------------------------
-------------------------S------------------------------------S-----------------
S-S------------S--------S--S----------------------------------------------------
---------------S----S-----------------------------------------------------------
-------------------------------------------------------------------------------S
----------------------------SS----------------------------S-----S------S-------S
SS-------------------------S-----------------------SS---------------------------
--------------------------------------------------S--S-------------SS-----------
-----------------------------------S-----S--
>forward_906
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------ACAGACACTTGCTACCCTGG------------------------------------------------------
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>reverse_2840
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---------------------------------------GTGATTAATTGACGCCCTTGCA-------------------
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