>input_sequence_73348
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----------ATGGTCAAGGTTCGTTGCTAATCAAGCAAAACTTT-----------------------------------
--AGTGTCTATTGCTCAGTTTTGTGCGTCGGTCTGAACGTGTTTTTGCTCTGTGTTGCAGCAAAAGATTGTTCTCAAGTT
GCCGTTGGATGGCGAGAGGAACAAGAGGAAGGCCTTCAAGGCCGCTGTTGGCATGGCAGGTATGAAGAAGCCAAGCCACT
GATCATGACAAACAACAGTTTATCTTCTTATGTTCGT---------------------T-------GGTTCTTAAAGGAA
GGTGGTG------AATTCTACAGGTGTGACATCCGCGACGTTGGAGGGGGACAAGATCATCATCCTCGGCGACGGCGTCG
ACCCGATCGCGCTGACGACGATGCTCCGGCGCAACCTAGGAAAAGCCGAGCTCGTCAGCGTGTCGTCCGGCGATGACAAG
AAGAAAGATGGC---GGCTACGGCTACG------------------GCGGAGAAAAGAAAAAGGACGGCTACGGCTACGG
CAGCGCCGACGGTGGCGGCCGCAAGGACACCAAGGGTAACGGCGGTTACCA------------------------TCAGA
ATGAGGTGGCGCCGATCCCGTACCCCGCGTACCACCAGTACAACGCCATGCCGTCCTACCCTGCTTACGCATACGCTCCG
TATCAGCAACAGCAACAGGATCCCGGTTGCAGCATAATGTAA--------------------------------------
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>chr5B_1_TraesCS5B01G169100
AAACCGGAGGCTAGGAAACCATGATTTCACGCCACCTTCACCTCTGACCCCTCTTATTTTTCCCTTGACGGCACATCTCT
TTCACCCCACCTTGAGTGCTAGAGGACAAGTCTATCGCTAACCACAGGAAA-ACGTACACAGCAGCATCCAAATCACAGC
ATAATAATGTATGGTGAACATGCCACTCGACCGCCCAGCACAGTTGTCACTGCACATATCAAACACTTCTGTGAGCAATC
AAGGATGAAAATTGTCACTGGTCTCTTTCTTGGAATGACTTTCCTAACAAATCTCCCTGGACGAACTAGTCACAACAACG
ACGCAAACCATT-AAGGCCTTGTTCGGTTAGGCAGGGTTTGGAGAGGTTTGAAAGGGATTGGAGGGGATTAAATTCCTTG
CAAGTCAAAATCCTTGTCAAACCTCTCCAATCCCTGTGGCGAGGGGATTAAACGAACAGGGCCTAAAGAGTTCCATGATG
AGCTACTAAGTAGGACCTCCATATTCGATAAGCTCGACAGACTGAATCTGCTAGTGCCAGCAGATCTTTGAGGAAGATCT
TCTCTGTTTCTCTCTCTACTACAC---TAGTATACTTGTCACTGGCCAAGCCAGACATGTCTTTCGTCTGG---------
------------------------------------AGCCTACCAGCCAAAGCCAATCACTCGACGTTGAGCTTCCGGGA
ACAGCAGCGCCGGGTCCATGGTGAGCTGGGCGTTTGGCACAGTGCCAGGCATGCCAATTATTCTCCCACCATTCTGTTGG
CTGATTGGTGGTTTGTTCCGTTTGTTAACTTTCTGTCTCTATAGCCTTCCGCGCTGCTTCCCTCTGACCCTCTCTCCCTC
CTTTGTGTGTGTCCTCTACTCTACTCTCTGTCTGCATATAAATAGGCCACCCGGGGCAACTTGTTGCTGATAAGAGGTAG
TAGCTCATCTTGCACTGTCAAATTGCACAGGGCAACTCTACTGACAAGCTAGACAAGGCTACAGCTCGTGAGAAACATTG
TGCAAGCAAGATGGTCAAGGTTCGTTGCTAATCAAGCAAAACTTT-----------------------------------
--AGTGTCTATTGCTCAGTTTTGTGCGTCGGTCTGAACGTGTTTTTGCTCTGTGTTGCAGCAAAAGATTGTTCTCAAGTT
GCCGTTGGATGGCGAGAGGAACAAGAGGAAGGCCTTCAAGGCCGCTGTTGGCATGGCAGGTATGAAGAAGCCAAGCCACT
GATCATGACAAACAACAGTTTATCTTCTTATGTTCGT---------------------T-------GGTTCTTAAAGGAA
GGTGGTG------AATTCTACAGGTGTGACATCCGCGACGTTGGAGGGGGACAAGATCATCATCCTCGGCGACGGCGTCG
ACCCGATCGCGCTGACGACGATGCTCCGGCGCAACCTAGGAAAAGCCGAGCTCGTCAGCGTGTCGTCCGGCGATGACAAG
AAGAAAGATGGC---GGCTACGGCTACG------------------GCGGAGAAAAGAAAAAGGACGGCTACGGCTACGG
CAGCGCCGACGGTGGCGGCCGCAAGGACACCAAGGGTAACGGCGGTTACCA------------------------TCAGA
ATGAGGTGGCGCCGATCCCGTACCCCGCGTACCACCAGTACAACGCCATGCCGTCCTACCCTGCTTACGCATACGCTCCG
TATCAGCAACAGCAACAGGATCCCGGTTGCAGCATAATGTAA--------GCTAAGGTGCCGACGAGAAAAGCTCGGGGA
GACTCAAAGACTTAGTCCAGGACAAGACAAGCTTTCATTTCAAAATAAGTTCAGGATAGGCTTAGAAATCCTGAACTGAT
CAAGCGAAGTACGATGAAGCAAGAGATTAGCTGGCTGCTTGAGCTGCACGTACATGTACATAGCTTGTGGAAGCATCTGC
AGTGGTTGTCTGTAAATTCAGGGCTTCAGTTCAGAGTGTCCTAGTGTTGTGGTCTGTGCAAGATT-GAAAAGGGTGGACG
GAATTAATGGAACAGAGAGATGCATGTTGCGCAAAAGCACACTGAACTTTTCAGAAAG-AAAAAACTTCCAATATATTCA
TTGCAGTACAAAGAACACCCGATGTAATAAAA----------------AGACCACCTAGCGACGAATACATGCACTAAAG
TGAGTTGAAGGCATGCCGCGTT-GTTGCCCCTCCCTCACCGGAGCCGGACAAAATTTGTTGTGGTAGACGGTTGGAAAGC
CGTCGTGCTAAGGCCGGCAAGACCAGTGCATCAGAACAACAACCGTTGCTGATGAAGAAAAATATAGATTAAAAGAATCC
AACATGTAGACACATGAAACGAAGACTGAATTCAAGCAGATCTATCGAAGACCTACACTAACTGAATTGTGTGATATCCG
TCAGAGACAGACCTCCACACGCCCTCCAACAATGCTAAATGCATTGCCGAGGCA--------------------------
---------AGGGCTCGGTGAGGAGAAACTTATCCCATCTTCAT------GGAGCCTCCACGGCCTCACCTTACTAAGCA
TGACACAA-AGCCTAAATAAACTTAGAAATACCTAAAAATGAAGTAGGAATCCTCCCACCTGCAAGGTCGGGGTCCACCA
CGCCTCAGTGGCCCTAGGGCCACCAAAGACTA---AGACCAGGAGGTAGAGGAACCCTAAACTTTTTTTCTTTGGAGAGG
AGGCGGCGACTGTGTAAAGCAACATGTTAAAAGCTCATATGAATTATATCTAAGAAAGGAAGAAGCTAATGAAA
>chr5D_1
AAACCGGAGGCCGGTGAACTATGATTTCACGCCATCTTCACCTCCGACGTCTCTTATTTTTCCCTTCACGGTACATCTCT
TTCACCCC-CCTTGAATGCTAGAGGACAAGTCTATCGCTGACCAGAGAAAA-ACGTACACAGCAGCATCCAAATCACAGC
ATAATAATGTATACTGAACATGCCAGTCGACCGCCCAGCACAGTTGTCACTGCACATATCAAACACTTCTGTGAGCAATC
AAGGATGAAAATTGTCACTGGTCTCTTTCTTGGAATGACTTTCCTAACAAATCTCCTTGGACGAACTAGTCACAACAACG
ACCCAAACCATT-AA-----------------------------------------------------------------
------------------------------------------------------------------AGAGTTCCATGATG
AGCTACTAAGTAGGACCTCCATATTCGATAAGCTCGACAGACTGAATCTGCTAGTGCCAGCAGATCTCTGAGGAAGATCT
TTTCTGTTTCTCTCTCTACACTGG-AGTAGTATACTTGTCACTGACCAAGCCAGACATGTCTTTCGTCTGGA--------
-----------------CCAAGTTAGCACCGACCGGAGCCTACCAG------CCAATCACTCGACGTTGAGCTTCCGGGA
ACAGCAGCGCCGGGTCCATGGTGAGCTGGGCGTTTGGCACAGTGCCAGGCATGCCAATTATTCTCCCACCATTTTGTTGG
CTGATTGGTGGTATGTTCCATTTGTTAGCTTTCTGTCTCTATAGCCTTCCGCGCTGCTTCCCTCTGACCCTCTCTCCCTC
CTTTGT--GTGTCCTCTCCTCTCCTCTCTGTCTGCATATAAATAGGCCTTCCGGGGTATCTTGCTTCTGATAAGAGGCAC
TAGCTCAGCTTGCACTGTCAAATTGCACAAGGCAACTCTACTGACAAGCTAGACAAGGCTACAGCTTGTGAGAAACATTG
TCCAAGCAATATGGTCAAGGTTGGTTGATAATGAAGCAAAACTTTTTA--------------------------------
TTAGTGTCTATTGCTCAGTTTTGTGCGTCGATCTGAACGTGTTTGGCACTCTTGCTGCAGCAAAAGATTGTTCTCAAGTT
GCCGTTGGATGGCGAGAGGAACAGGAGGAAGGCCTTCAAGGCCGCTGTTGGCATGGCAGGTATGAAGAAGCCG-----CT
CATCATGGCCAACAGTTGCTT-AATT-----------------------ATCTTCTTCTCTTCGCTGGTTCTCACAGAGA
GGTGGTGAATG--AATTCTGCAGGCGTGACATCCGCGACGTTGGAGGGGGACAAGATCATCATCGTCGGCGACGGCGTCG
ACCCGATCGCGCTGACGACGATGCTCCGGCGCAGCCTAGGCAAAGCCGAGCTCGTCAGCATCTCTTCCGGCGATGACAAG
AAGAAAGATGGC---GGCTACGGCTACGGG---------TA---CGGCGGAGAAAAGAAGAAGGACGGCTACGGCTACGG
CGGAAGCGACGGTGGCGGCGGCAAGGACTCCAAGGGCAACGGCGGTTACCA------------------------TCAGA
ATGAGGTCGCGCCGATCCCGTACCCCGCGTACCACCAGTACAACGCCATGCCGTCCTACCCTGCTTACGCGTACGCTCCG
TATCAGCAACAGCAACAGGATCCCGGTTGCAGCATAATGTAA--------GCTAAGGTGCCGACGAGAAGAGCTCGGGGA
GACTCAAAGACTTGGTCCAG-----GACAAGCTTTCATTTCAAAATAAGTTCAGGACAAGCTTAGAAATCCTGAACTGAT
CAAGCGAACTACGATGAAGCAAGAGATGCGCTGGCTGCTTGAGCTGCACGTACATGTACATAGCTTGTGGAATCATCTGC
AGTTGTTGTCTGTAAATTCAGGGCTTCAGTTCAGAGTGTACTAGTGTTGTGGTTTGAGCAAGATT-GAAAAGGGTGGACG
GAATT---------------------------------------------------------------------------
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>chr5A_10
---------GCTAGGAAACCATGATTTCACGCCACCTTCACCTCTGACCTCTCTTTTTTTTCACTTGACGGCACATCTCT
TTCACCCCACCTTGAGTGCCAGAGGAGC---CTACCGCTAACCAGAGAAAAAACGCACACAGCAGTATCCAAATCACAGC
ATAATAATGTATGCTGAACATGCCACTCGACCGCCCAGCACAGTTGTCACTGCACATATCAAACACTTCTATGATCGATC
AAGGACGAAAATTGTCACTGGTCTCTTTCTTGGAATGACTTTCCTAACAAATCTCCCTGGACGAACTAGTCACAACAACG
ACGCTAACCATTAAA-----------------------------------------------------------------
------------------------------------------------------------------AGAGTTCCATGATG
AGCTGCTAAGTAGGTCCTCCATATTCGATAAGCTCGACAGACTGAATCTGCTAGTGCCAGCAGATCTCTGAGGAAGATCT
TTTCTGTTTCTCTCTCTACTACACTAGTAGTATACTTGTCACTGACCAAGCCAGACATGTCTTTCGTCTGGACCAAGTTA
ATGTGTGGAAACTCTGGCCAAGCTAGCACCGACCGGAGCCTACCAC------CCAATCACTCGACGTTGAGCTTCCGGGA
ACAGCAGCGCCGGGTCCATGGTGAGCTGGGCGTTTGGCACAGTGCCAGGCATGCCAATTATTCTCCCACCATTTTGTTGG
CTGATTGGTAGTTTGTTCCATTTGTTAGCTTTCTGTCTCTATAGCCTTCCGCGCTGCTTCCCTCTGACCCTCTCCCCCTC
CTTTCT--GTGTCG-----TCTACTCTCTGTCTGCATATAAATAGGG---CCGGGGTATCTTGCTGCTGATAAGACGCAG
AAGCTCATC-----------------------CAACTCTACTGTCAAGCTAGACAAGACTAGAGCTCGTGTGAAACATTG
TCCAAGCAAGATGGTTAAGGTTGGTTGCTAATCT-GCAAACCTTTTACCAATTTAGCTCGTCGTGTTCTAGCTACGAGTG
TTAGTGTTTATCGCTCAGTTTTGTGCGTCGATCTGACCGTGTTTC-GCTCTGTGTTGCAGCAAAAGATTGTTCTCAAGTT
GCCGTTGGACGGCGAGAGGAACAGGAGGAAGGCCTTCAAGGCCGCCGTTGGCATGGCAGGTACGAAGAAG--AAGCCACT
GATCATGACTACCACCTGTTTAAATT-----------------------ATCTTCTTCTCTTCGTTGGTTCTCAGGGAGA
GGTGGTGAATG--AATTCTGCAGGCGTGACATCCGCGACGTTGGAGGGGGACAAGATCATCATCCTCGGCGACGGCGTCG
ACCCGATCGCGCTGACGACGATGCTCCGGCGCAGCCTAGGCAAAGCCGAGCTCGTCAGCGTGTCGTCCGGCGACGACAAG
AAGAAAGATGGC---GGCTACGGCTATGGCGGCTACGGCTA---CGGCGGAGAAAAGAAGAAGGACGGCTACGGCTACGG
TGGAGCTGACGGCGGCGGCGGCAAGGACTCCAAGGGTAACGGCGGTTACCA------------------------TCAGA
ACGCGGTGACGCCGATTCCCTACCCGGCGTACCAGCAGTACAACGCCATGCCGTCCTACCCTGCTTACGCCTACGCTCCG
TATCAGCAACAGCAACAGGATCCCGGCTGCAGCATAATGTAAGCTAAGCTGCTAAGGTGCCGACGAGAAGAGCTCGGGGA
GACTCAA-----------------------GCTTTCATCTCAAAATAAGTTCAGGACAAGCTTATAAATCCTGAACTGAT
CAAGCGAGCTACGATGAAGCAAGAGATGCGCTGGCTGCTTGAGCTGCACGTACATGTACATAGCTTGTGGAATCATCTGG
AATGGTTGTCTGTAAATTCAGGGTTTCAGTTCAGAGTGTACTAGTGTTGTGGTTTGTGCAAGATTGGAAAAGGGTGGACA
GAATAAATGGAACAGAGAGATGCATGCTGCGCAAAAGCACACTGAATTTTTAAGAAAG-AAAAAACTTCCAATATATTCA
TGGCAGTACAA-GAACACCAGATGTAATAAAGAAACATTCACGTCCGGAGACCACCTAGTGACGACCACAAACACTGAAA
TGAGTTGGAGGCGTACCGCCGTCATCGCCCCTCCCTCATCTAAGCCGGACAAAATTTATTATAGTAGACAGTTGGAAAGT
CATCGTGCTAAGCCCC-CAAGACCAGTGCACCAGAAG--CAACCGTTACTGATGAAGAAAAGTGTAGATTGAAAGAATCC
AACCTGCAGACACATGAAACGAAGATTGGATCCAAGCAAATTCATCAAAGACATGCACCGATTGAATTGCGCGAGATCCG
TCAGAGACACACCTCCA-----------------------------------CA--------------------------
---------AGGGCTAGGTGAGGAGAAACTTGTCCCATCTCCAA------GGAGCCTCCACGGCCTCACCTTACTAAGGA
GGACACCATACCCTAAATAAACTTAGAAATACCTAAAAACGGAGCAGGAATCCT--------------------------
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>chr5D_1044
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----------TTGCTCAATTTTGTGCGTCGTTCTGAATTTTTTGTAT----TTGTTGCAGCAAAAGATTGTTCTCAAGTT
GGCTCTGGATGACGAGAGGAAGAGGAGGAAGGCCTTCAAGGCTGCCGTTGGCATGTCAGGTATGAACAAGCCA-------
--------CAGATAACAGTTAATCGGTTAATCCATAATCCGTCGTTCCAATCTTCTTCT-------TGTGCTTACGAGGA
GGTGCTCAATTTCAATTCTGCAGGCGTGACATCCGCGGCGATGGAGGGGGAAAAGATCATCATCGTCGGGGACAGTGTCG
ACCCGATCACGCTGACGACGGTGCTCCGGCGCAGCCTAGGCTACGCAGAGCTCCTCAGCGTGTCGTCCGGCGACGACAAG
AAGAAGGATGGCTACGGCGCCGCCTATGGG---------TACGGCGCCGGCGAGAAGAAGAAGGACGGCTATGGATACGG
CGG---CGACGGCGGCGGGAGCTTTGGCGGCAAGGAGGATGGCGGTTCCAAAGGTGGCGGCGGGGGCGGCTACTCTCAGA
ACGCGGTTGCGCCGATCACGTACCCCGCCTATCAGCAGTACAACGCCATGCCGTCCTACCCGGTTTAC------------
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>chr5D_1905
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-------------------------------------------------------------------------------G
GAATAAATGGAACAGAGAGATGCATGCTGCGCAAAAGCACACTGAATTTTTAAGAAAGAAAAAAACTTCCAATATATTCA
TTGCAGTACAGGGAG---------------AA----------------AGACCACCTAGCGACAACTACATGCACTAAAG
TGAGTTGAAGGCATGCCTCTGTCGTCGCCCCTCCCTCACCAGAGCCGGACAAAATTTGTTGTAGTAGACGGTTGGAAAGT
CGTCGTGCTAAGGCCGGCAGGACCAGTGCACCAGAACATCAACCGTTGCTGATGAAGAAAAGT--AGATTAAAAGAATCC
AACCTGTAGACACATAAAACCAAGACCGGATTCAAGCAGATGTATCGAAGATCTGCACTAACTGAATTGCGTGATATCCG
TCAGAGACAGACCTCCA-----------------------------------CACGCCCTCCAACAATGCTAAACGCATT
GCCGAGGCAAGGGCTAGGTGAGGAGAAACTTATCCATTCTTCAGCTTTAGGGAGTCTCCACGGCCTTACCTTACTAAGCA
GGACACAA-ACCCTAAATGAACTTAGAAAGACCTAAAAACAGAGCAGGAATCCTCCCACCTGCAAGGTCGGGGTCCACCA
CGCCTCAACGGCCCTAGGGCCACCGAAGACGAGGCAGACCAGGAGGTAGAGGAACCCTAAACTTTTTTCTTTGA-AGAGG
AGGCGACGGCTACGTAAAGCAACATGTTAAAAGCATATTTGAATTATATCTAAGAAATGAAGAACCTAATGAAA
>SNPs
-------------------------------------------------S------------------------------
--------------------------------------------S--S--------------------------------
-------------S------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--------------
-------------------------------------------------------------------S------------
-S------------------------------------------S-----------------------------------
----------------------------------------------SSSSSS----------------------------
-------------------------------------------------------------------------S------
-------------------S-------S----------------------------------------------------
------SS---------S------------------------------SS------S-S----S-------------S--
-----------------------------S--------------------------------------------------
-S--------------------S---------------------------------------------------------
------------------------------S--------------S----------------------------------
-----------------------S--------------------------------------------------------
--------------------------S-S--SSSSSS-------------------------------------S---S-
-------------------S----S-------------------------------------------------------
---------------------------------S------S---------------------------------------
-----------------------------------------------------------S--------------------
-S-S---------------S--------S---------------------------------------------------
----------------------------------------------------------------------S---------
---------------------------------------------------------------------S----------
-------------S------SSSSS-------------------------------S-S---------------------
--------S------------------SS-------------------------------------------S-------
---------------------------------------S-------------S--------------------------
--------------------------S-------------------S----S----------------------------
-----------S-------S---------------------------------------------S--------------
-------------------SS----S--------------S---------------------S----------------S
------------------------------S-------S----------------------S-S----------------
---S------------------------S------------S------------S--------------S----------
-----------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----------------------------
---------------S---------------------------S------------------------------------
S---------S----------------------------S-S--S-----------------------------------
-------SS---------------S-----S-------------------------------------SS--SSS-----
-----S--S--SS---------------------SS--S------------------S------S---------
>forward_358
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------------------CTTGTTCGGTTAGGCAGGGT------------------------------------------
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>reverse_2499
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------------------ACGCCCTCCAACAATGCTAA------------------------------------------
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