>input_sequence_73332
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------------------ATGACAGATGTCAATGACGAGGGACAAGTTATAGGGCATCAAACAAACTTGCCAAATGGATT
TTATCGAGATATTGTCACCGTCACATTTAAAGGGTTTGGCCTTACTTTCAGCAAAATCCTTACCACTTTCAAAGTGATTG
ATTTCTCAAACAACTCATTTTATGGTCCTGTTCCGGAGTCAATTGGAAGGCTTGTTTCACTGCATGGACTTAACATGTCA
CATAACAACTTTACAGGGGAAATTCCGTCCGATTTTGGAAACTTGTCTCAGCTAGAGTCATTGGAACTAT--CTTGGAAC
CGGATCTCAGGGAAGATACCAAAAGAGTTAGCCTCTCTTACCTCTCTTGAATGGTTGAATCTTTCATACAACAACTTGTC
CGGAAGAATTCCGCATGGGAACCAGTTCTTGACATTTTCTAACAGCTCATTAAAAGGGAATGGTGGCCTCTGTGGACTTC
CACTCTCCAAACAATGTGGATCTCCAGGTT---------CAAATGCAGTGGCTCCTCCTGAATCCAACAGTTTGTGGCAG
GACAAACTTGGTATCATCCTCCTGTTTGCTTTTGTTGGCCTCGGGTTTGGAGTGGGCTTCGCATTGTCATGCATGTTACG
ATTGTTCTGCCACCAAGAAGGATGA-------------------------------------------------------
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>chr3D_1_TraesCS3D01G102000
GAGATCATTTGGGTTAAGGCTATTCTCAAGGAGCTTGGTTTTCATCATACACAAACTCCTTGTCTTTGGTGTGATAATCT
GGGTGCCACATATCTAGCTACAAATCTTGTCTTTCATGCCAGAACCAAACACATTGAGATAGACTATCACTTTGTCAGAG
AAAGAGTTGCGAACAACGAACTGGACATTCGTTTTGTGCATTCAAGAGATCAAGTTGCAGATGGATTCACAAAAGCCTTG
GCTACGAAACCTTTTGAGGAGTTTAGATGTAATCTCAACTTGCAAAGTTTAGATTAAGGAAGTGTGTTAACCATGTAATA
TTGTGTGG---------------------GCCGGACTAGTTCCTTGGGCGCCACACATTGGGGTAGATTTTTTCTGTTTA
AGTATGTTTAAGTATCTATCTCTATTCCCTAAATCTCTCTCTCT----------------GTAATCTCCT-CAACCGAAC
ATGTATATCCCCTCGAGAGGGTTGTCTCACCATCTAATATATATACATGCGGGCTCCCTGAAGGGAGTTGAGACGCTTCA
TCAATAGCTTTCAGTGCAAGCAAGCTGATTATCATGGACTTATCTTACAATAATTTAAGTGGATCGGTCCCATCATGTCT
AGTAGAAAATGGAGA---CTTAAGGGTACTGAAGTTGACAGAAAATCATTTCCATGGGATATTGCCTGAAAATATTAGAG
AAGGATAAAT--TTGAAACACTAGATTTGAATGGAAATCAAATTGAAGGTAAACTACCTAGATCACTATCAAATTGTCGT
GACCTAGAGCTCATTGATGTTGGTAACAATCAAATGGCCGATTCTTTTCCATCATGGTTAGGTGTTCTTCCACAGCTCCA
AGTTCTTGTCTTAAGATCAAACCAATTCAATGGCACAATAAGAGATAATAAAGGTGATAATCATAGCAGAAATCATTTCT
CAT---------------GTTTGCAAATACTTGATTTGTCCTCCAACAATTTTTCTGGATATCTTCCAACAGGATGGTTT
AATGAACTGAAAGCAATGATGACAGATGTCAATGACGAGGGACAAGTTATAGGGCATCAAACAAACTTGCCAAATGGATT
TTATCGAGATATTGTCACCGTCACATTTAAAGGGTTTGGCCTTACTTTCAGCAAAATCCTTACCACTTTCAAAGTGATTG
ATTTCTCAAACAACTCATTTTATGGTCCTGTTCCGGAGTCAATTGGAAGGCTTGTTTCACTGCATGGACTTAACATGTCA
CATAACAACTTTACAGGGGAAATTCCGTCCGATTTTGGAAACTTGTCTCAGCTAGAGTCATTGGAACTAT--CTTGGAAC
CGGATCTCAGGGAAGATACCAAAAGAGTTAGCCTCTCTTACCTCTCTTGAATGGTTGAATCTTTCATACAACAACTTGTC
CGGAAGAATTCCGCATGGGAACCAGTTCTTGACATTTTCTAACAGCTCATTAAAAGGGAATGGTGGCCTCTGTGGACTTC
CACTCTCCAAACAATGTGGATCTCCAGGTT---------CAAATGCAGTGGCTCCTCCTGAATCCAACAGTTTGTGGCAG
GACAAACTTGGTATCATCCTCCTGTTTGCTTTTGTTGGCCTCGGGTTTGGAGTGGGCTTCGCATTGTCATGCATGTTACG
ATTGTTCTGCCACCAAGAAGGATGAGACTGCAAGCACTGATCAATCCGTATGTGATCCTATTGCACATAATATGTATTAT
TGTATTGAATATTTCTTCCCAAAAAGAGAAATGTCCTGTGTATATATGTTGTACTTACCTGAGACAGCTTAATATGTTGT
CTGGTTGATTTGGCTGAACCGGATTGCAAGTATTGCGAACTTTACATGCTATCCAGTGTGTTAATTATTTCTGATGCCGA
TTTTTCATGAGCCCTACTTGTCAGATAACCAGGAGAGTATAATAAACTTTAAGAAACTCGTTTTATTTTGGTTGAAACTA
GCAACTTTCTTCATTATTTACTACTCTCTCTGTAAACTAATATAAGAGCGTTTAGAATACTAAAGTAGTGATCTAAACGC
TCTTATATTAGTTTACAGAGGGAGTACTATATATGTTCAAATATAATTGGGCTGTCAAAAAATAGTGAAGGGAGTTGGTT
TTAGGCTTTAGCGACCTGGGCTGTCTCTGATGTCTATCTCCCTAAGCAGATCGACAGGACAGTACACGCTCAGGTTTGCT
TTTGAGCGTCTGCTGTGGTGGAATCATCAGGAGCAACGGCGATCAAGCCAAGGATCGGCTGCGAGGGAGATAGTGTGCTC
GTTATGTGTATAGCACTCGACAATTGGTCGGCCGTGAAGTGTACGTGAGAAGATATGTGTGTGCGGTTGCATCAGGTATA
TATGTACGATTGGTCTGCGTTACAACTTCCAAGCCCTTCCCTGCACGGCAGGCAGCTGGTCTGTCTCAGTCAGTACATGT
TTCGTGCTGTTACATAAACCCCTTCGTCTGCATGCGTACAAAAAAAGATATGTACGTCCGAGTGCGTCGACCGCAATGAA
GCTTTCTTGTACCGCAGTACAGGAATCCCGGGGTCGCATGGTCACGACAATGGCAAAACGCCCAGATGATAGTTTCGAGA
GTACTCCTCGGCCCTCATATCTCACATCTTTCTTGTCCTGTATGCACTCCCTGCTTCATGCCGAC
>chr3A_1
GAGATCATTTGGGTTAAAGCTATTCTCAAGGAGCTTGGTTTTCATCATACACAAACTCCTTGTCTTTGGTGTGATAATCT
TGGTGCCACATATCTAGCTGCAAATCCCGTCTTTCGTGCCAGAACCAAACACATTGAGATAGACTATCACTTTGTCAGAG
AAAGAGTTGCAAACAAAGAACTGGACATTCGTTTTGTTCATTCAAGAGATCAAGTTGCAGATGGATTCACAAAAGCTTTG
GCTACAAAACCTTTTGAGGAGTTTAGACGTAATCTCAACTTGCAAAGTTTAGATTAAGGGAGGGTGTTAACCATGTAATA
TTGTG--G---------------------GCCAGACTAGTTCCTTGGGCGCCACACATTAGGGTAGATCTTTTC------
----TGTTTAAGTATCTATCTCTATTCCC-----------------------CTTTCTCTGTAATCTCTCCAAATCGAAC
ATGTATATCCCCTGGAGAGGGTTATCTTGCAATCTAATATATATACATGCGGGCTCCCTGAAGGGAGTTGAGACGCTTCA
TCAATAGCTTTCA-------------------------------------------------------------------
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>chr1B_1
GAGATCATTTGGGTTAAGGCTATTCTTGAGGAGCTTGA-TTTCATCATACACAAACTCCTTGTCTTTGGTGTGATAATCT
TGGTGCCACATATCTAGCTGCAAATCCTGTCTTTCATGCCAGAACCAAACACATTGAGATAAATTATCACTTTGTCAGAG
AAAGAGTTGCAAACAAAGAACTGGACATCCGTTT-GTGCATTCAAGAGATCAAGTTGTAGATGGATTCACAAAAGCCTTG
GCTATGAAACCTTTTGAGGAGTTTAGACGTAATCTCAACTTGCAAAGTTTAGATTAAGGAAGGGTGTTAACCATGTAATA
TTGTGTGTGCCAGACTAGTTATTGTGTGCGCCGGACTAGTTCCTTGGGCGCCACACATTGGGGTAGATCTTTTC------
----TGTTTAAGTATCTATCTCTATTCTCTAAATCTCTCTCTCTCTCTCTCTCTCTCTCTGTAATCTCCT-AAACCGAAC
ATGTATATCCCCTCGAGAGGGTTATCTCGCCATCTAATATATATACATGCAGGCTCCCTGAAGGGAGTTGAGACGCTTCA
TCAATAGCTTTCA-------------------------------------------------------------------
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------------------------------------------------------------------------------AG
GACAAGCACGCT--------------------------------------------------------------------
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>chr3B_557
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----------------------------------TGGACTTATCATACAACAATTTCAGCGGTGTGGTGCCATCCTGTCT
AATGCAAGGTAGCAATAGCTTGAGTACATTGAAATTGAGAGAGAATCGTTTCCATGGGATGCTGCCTGAAAATATTGGAG
AAGGATGTATGCTTCAGACAATAGATTTGAACAACAATCTAATTGAAGGGAAAATACCCAGATCACTATCAAATTGCCAA
GGCCTAGAACTCTTTGATGTTGGTAACAATCAAATTATCGGTTCTTTTCCATCTTGGTTGGGTGTTCTTCCACGTCTTCG
AGTTCTTGTCTTGAGATTCAACCAACTAAACGGCACCATAAGGGATTTTAAAGGCGATCATACAATCAAC----------
-----AACTACTTTGCAAATTTGCAAATACTTGATTTGGCCTCCAACAACTTCTCTGGAAACCTACCAGAAGGATGGTTT
AATGAACTGAAAGCAATGATGGAAAATGTCAGTGATGGGGGAGAAGTTCTAGGACATGAGACATATTCAGGTGCACGATT
TTATCAAGATACTGTTACCATAACATTCAAAGGGTTTGATCTTAGTTTCACCAAAATCTTAAGCACTTTCAATGCAATAG
ATTTCTCAAATAACTCATTTGATGGTCCTGTTCCGGAGTCAATTGGGAGGCTTGTTGCCCTGCGCGGACTTAACATGTCA
TACAACAACTTCATGGGACAAATTCCATTTCAGTACAGAAACTTGTCTCAGCTGGAAGCAATGGATCTCT--CTTGGAAC
CAGATAACAGGGGAAATACCACAGGAGTTAACCTCACTTACTTCTCTTGAATGGTTGAATCTTTCGTACAACAACTTGTA
TGGAAGAATCCCGCAAGGAAACCAGTTCTCAACATTTTCAGACAGTTCATTTGAAGGTAATGCAGGTCTCTGTGGAGTTC
CACTCTCCAAACACTGTGACAATCAAAGTTCAATTTCTCCAACTGGAGTGGCTCCTCCGGAATCTGAGGGTTTGTGGCAG
GACAAACTCGGCATTATCCTTTTTTTCGCATTTGTTGGCTTGGGATTTGGAGTCGGCTTTGCATTGTCATTCTTGTTGCG
ACTGTATTGCCGCGTGGAAGGATGGATCTGCAAGCAAGCATGGATCCATATGTAATAATAGAGCACTTTTACTATGTACT
GTATTCAGT--TTTCTTCCTGAAAAAACATATGCCATGTGCATATGGGTTGTACTT------------------------
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>chr3D_629
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-----------------------------TGAAGTTGAGAGAGAATCATTTCCATGGGATACTGCCTGAAAATATTATAG
TAGGATGTATGCTTCAGACAATAGATTTGAACAACAATCTAATTGAAGGGGAAATACCCAGATCACTATCAAATTGCCAA
GGCCTAGAGCTCCTTGATGTTGGTAACAACCAAATTGTCGGTTCTTTTCCATCTTGGTTCGGTATTCTTCCACATCTTCG
AGTTCTTGTCTTGAGATCCAACCAACTAAACGGCACCATAAGGGATATTAAACATGATCAGACAATCAAC----------
-----AATTACTTTGCAAGTTTGCAAATACTTGATTTGGCCTCCAACAACTTCTCTGGAAACCTACCAAAAGGATGGTTT
AATGAACTGAAAGCAATGATGGAAAATGTTAGTGATGAGGGACAAGTTCTAGGACATGAGACATCTTCAAGTGCAGGATT
TTATCAAGATACTGTTACCATCACATTCAAAGGATCTGATCTAAGTTTCATAAAAATCCTAAGCACTTTCAATGCAATAG
ATATCTCAAATAATTCATTTGATGGTCATGTTCCGGAGTCAATTGGGATGCTTGTCTCCCTACGCGGACTTAACATGTCA
TACAACAACTTCACGGGACAAATTCCATTTCAGTACAGAAACTTATCTCAGCTGGAACCGATGGA--TCT--CTTGGAAC
CAGATAACAGGGGAAATACCACAAGAGTTAACCTCACTTACTTCTCTTGAATGGTTGAATCTTTCATGCAACAACTTGTA
TGGAAGAATCCCACAAGGCAACCAGTTCTCAACATTTTCTGACAGTTCATTTGAAGGTAATGCAGGGCTCTGTGGAGTTC
CACTCTCCAAGCACTGTGACAATCAAAGTTCAATTGCTCCAAGTGAAGTGGCTCCTCCAGAATCTGACAACTTGTGGCAG
GACAAACTCGGCGTTATCCTTTTGTTCGCGTTTGTTGGCTTGGGATTTGGAGTCGGCTTTGCACTGTCATTCTTGTTGCG
ACTGTATTGCCGCATGGAAGTATGGGTCTACAGGAAATCATGAATCCATATGCAATACTATTCGCATACAATGTA-----
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>chr3B_629
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-----------------------------TGAAGTTAAGGGAGAATCATTTCCATGGGATGCTGCCTGAAAATATTGGAG
AAGGATGTGCGCTTCAGACAATAGATTTGAACAACAACCGAATTGAAGGGAAAATACCCAGATCGCTATCAAATTGCCAA
CAGCTAGAGCTCCTTGATGTTGGTAACAATCAAATTGTTGGTTCTTTTCCATCTTGGTTGGGGGTTCTTCCACAACTTCG
AGTTCTTGTCTTAAGATCCAACCAACTCAACGGAACCATAAGGGATATTAAAGGTGACCATACAGTCAGAAACTATACAG
TCAGAAACTACTTTGGAAGTTTGCAAATACTTGATTTAGCCTCCAACAACTTCTATGGAAACCTACCAAAAGGATGGTTT
AATGAACTGAAAGCAATGATGGAAAACGTCAGTGATGAGGGACAAGTTCTGGGGCATGAGACAAATTCAAGGGAAGGATT
TTACCGAGATACTGTTACCATCACATTCAAAGGGTTTGGTCTCAGTTTCACCAAAATCCTAAGCACTTTCAAAGTAATAG
ATTTCTCAAATAACTCATTTGGTGGTCATGTTCCAGAGTCAATTGGGAGGCTTGTTTCCCTACGTGGGCTTAACATGTCA
TACAACAACTTCACAGGACAAATTCCATTTCAGTACAGAAACTTGTCTCAGCTGGAATCGATGGA--TCTCTCTTGGAAC
CAGATAACAGGGGGAATACCACATGAGTTAACCTCACTTACTTCTCTTGAATGGTTGAATCTTTCATACAACAACTTGTA
TGGAAGAATCCCGCAAGGCAACCAGTTCTCAACATTTTCAGACAGTTCATTTGAAGGTAATGCAGGCCTCTGTGGAGTTC
CACTCTCCAAACACTGTGACAATCAAAGTTCAATTTCTCCAACTGGAGTGGCTCTTCCGGAATCTGAGGGTTTGTGGCAG
GACAAACTCGGTGTTATCCTTTTGTTCGCATTTGTTGGCTTGGGATTTGGAGTCGGCTTTGCATTGTCATTCTTGTTGCG
ACTGTATTGCCGCATGGAAGGATGGATCTGCAAGCAAGCATGAATCCATATGTAATAATAGAGCACTTTTACTATGTACT
GTATTCAGT--TTTCTTCCTGAAAAAACATATGCCGTGTGCATATGGGTTGTAC--------------------------
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>SNPs
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S------------------S------S-----------------------------------------------------
----------S-----S---------------------------------------------------------------
---------------------------S----------------------------------S-----------------
--------------------------------------------------------------------S-----SSSSSS
SSSS-------------------------------------------------------------------S--------
-----------------------S----S---------------------------------------------------
-------------SSSSSSSSSSSSSSSSSSSSS----------S-----S-----S--S--SSS---S-----S-----
-S-SS--SS-S-SS-------S--SSS-S---------S---S------------------S------------------
------SS------S-S---S----------SSSS----S---------S---S----S-----------------S-SS
------------S----------------------S-S--S------------S-----S--------------S--S-S
------------------S------S----S-----S-----S----S----------S--SSS-S------SS--SSSS
SSS-----------------------------------S----------S--S------S-S--S----S----------
---------------------SS-S------S---S------------S--------S-S-----S-SSSSSS-S-----
-----------S---S---S-------S-----------S----S-----S---------S-S------------S--S-
----------S---------S-------------------------S-----------S----S----------------
S-S--------S-----SS-------S-SSS-S-SSS----------------S--S---S----S--S-----------
-S---SS-----S-S------S--------S----S-----S-------------------------------------S
S--------S-----S--S----------SS---------S----S-----SS----S----SS------------S---
-------------S----SSSS--S-S---------------S--S------------S-----SS--------------
--------S-----S-----SS----S--S---------S-S--S--------S-----S----------S-S----S--
-S---SS----S-SSS--------S-S---------S-S--S-----S-----S--S---------S-S-SS-S-S-SS-
SSSS-SSSSSS--------SS----S-S-S---S-S----S----SS---------SSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_586
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------GCTTTCAGTGCAAGCAAGCT------------------------------------------------------
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>reverse_2301
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------------------------------------------------------------GCGAGGGAGATAGTGTGCTC
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