>input_sequence_73317
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------------------------------------------------------------------ATGTGCGGCTGCGA
CGACTGCTGCGGCTGCATCTCTTACAGGACCAGGGAGAACATCAAGTACGGCTGCATCTGCTTCGGCGTCGTCGCCGTCG
TGGTCGTCTTCGCCGTCCTCCTGGCCGCCTACGCCTTCCTCCGCCACGTCAGCATCATCGTGGAGGACGCCTCGCTGACC
AGGTTTGCACTGCTGACGACCCCGGCGACGGCGCTCGCGTACAACCTCTCGCTGTCTCTCAACGTCCGCAACCCGAACTG
GGCGATGAGCATCAAGAACACGGAGCCGTTCGAGGCCGCCTACAAGTTCGACGGCCAGCAGTTCGACCGCGTGCAGGTCT
CTGACAAGGGCGACAAGCATCCCCCCAGGAAGACCATGGTTTACCGCCTTGACTCGGGATCAGACGGCGCCCTCGTGTCG
CTGGGTAACGCCGGCGTGGTGGAGTACAAGAAGGAGAACGAGACAGGTGTGTTCGAGGTGGAGGTGGCGCTGACCCGCAA
AGTGAGCTACACAGCGCGCTACACCAAGTGCAAGATCGAGGCCACCTGCAAGCTCAAGCTCAAGCTCGTGAAGCCGGAGA
CGACCACGGTGGTGTTCGAAAAAGTGAAATGCAAGCTAGAAAAGGCCGAGAAAAACTGCTAG------------------
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>chr2A_1_TraesCS2A01G379200
CGTCTGGTTCGTGTCCGCGCCGATGCATTTGCGGCTTAAAATTTGGGCTGCAAATGCGTCGGCGCAATGGCAAAACGGAC
ACGTTTTAGATTTAGGTCAGCACGTTGGGCCTTCATTTTTGTCCGCACCGACCTAAACGGAGGCAGCCGGACGATTTGGA
TGGCTGCGTTGGAGTTGCTCTTAGGGCTCAAAATCTGAAGTTAACGGCAGCAAACTCCAGATGATTAGTGAGAGTATGAG
AAAATGGGTCCCTTTGCTTCATGTGAAAGATGTGCGGCTGCGGCGACTGCTGCGGCTGCATCTCTTACAGGACCAGGGAG
AACATCAAGTACGGCTGCATCAGCTTCGGCGTCGTCGCCGTCGTGGTCGTCTTCGCCGTCCTCCTGGCCGCCTACGCCTT
CCTCCGCCACGTCAGCATCACCGTGGAGGACGCCTCGCTGACCAGGTTTGCACTGCTGACCACCTCGGCGACGGCGCTCC
ATGTGAAAGTATGAGAAAATGGGTCTCTTTGCTCCATGTGAAAGAAGGTGGGGAGCGTGAAAGGCTGGTTTATCTTATAT
CAAAATGAAACATAAATCCGGGGAGAACTAATCATCTGGAGTTTGCTGCCGTTAACTTCAGATTTTGAGCCCTAAGAGCA
ACTCCAAATCTTGAGTCACTAACGGCACCTTCTTTCACATGGAGCAAAGGGACCCATTTTCTCATACTCTCACTAACGGC
AGCAAAC-------------ACCGCGTGGAGGACGACGAATCTTGAGTCAAGTCGTCGCGCTCGGGCGTACTTGGGAAAT
TGCCGAATCGGATGATTTCTTCC--------ATGGAATATATACATGTCGGATGGTCCCAACTCCCAAGGTGTGAATAAC
AATGTTGGCCTATTTATAGGAGTGCTTCGCTTCCTCCATTCCGCCACAACGTTTGCCCAGACT-----TCAAATTCTAAA
GTCAATAGCAGGCACCACCACCACCTCATCCAAGATCTGAATAGAGAAAAACCTCCGGCGGGAACGATGTGCGGCTGCGA
CGACTGCTGCGGCTGCATCTCTTACAGGACCAGGGAGAACATCAAGTACGGCTGCATCTGCTTCGGCGTCGTCGCCGTCG
TGGTCGTCTTCGCCGTCCTCCTGGCCGCCTACGCCTTCCTCCGCCACGTCAGCATCATCGTGGAGGACGCCTCGCTGACC
AGGTTTGCACTGCTGACGACCCCGGCGACGGCGCTCGCGTACAACCTCTCGCTGTCTCTCAACGTCCGCAACCCGAACTG
GGCGATGAGCATCAAGAACACGGAGCCGTTCGAGGCCGCCTACAAGTTCGACGGCCAGCAGTTCGACCGCGTGCAGGTCT
CTGACAAGGGCGACAAGCATCCCCCCAGGAAGACCATGGTTTACCGCCTTGACTCGGGATCAGACGGCGCCCTCGTGTCG
CTGGGTAACGCCGGCGTGGTGGAGTACAAGAAGGAGAACGAGACAGGTGTGTTCGAGGTGGAGGTGGCGCTGACCCGCAA
AGTGAGCTACACAGCGCGCTACACCAAGTGCAAGATCGAGGCCACCTGCAAGCTCAAGCTCAAGCTCGTGAAGCCGGAGA
CGACCACGGTGGTGTTCGAAAAAGTGAAATGCAAGCTAGAAAAGGCCGAGAAAAACTGCTAGATACTTCCTC------TG
TGTGTTTGTTTGTTTCCATTCAATGTATCTGGTATTTTTCCCACTCTTTGATGAAAGATGTGATGATACTTTTTGATGTT
GTCTTGCTAATTCAGAAACAAAGTTCGATGGTACTATTAGATTCAATTTTTTTTACGCATTTGTTCAATCTCATGAACTT
TAAAAAATTTCTGACCCTGCTTAAATTCGCAGCGAGCCCGAAGGCTGAACCAGGACTTTGCCGGAGACAGGCGTTTCAGA
AGTTTGGAACCA-TCCTCTCGCAAAACCAAAGCGGAGGCGGCGGCGCTCCAGATCCAGGGTGCACGCTGATGACTCCGCC
ACTCCCCTTCCTCTCCGGCCGCCATCTTGGCACTGCGA-GGGGAGGGGAGCCCTGGTTTCTCAGTTGGGCGTTTAGTAAT
CCTAGATTTTCTAGTTTTTTCGAGTTTCTTCCGTCGATATCATGGTGGGGCTGATGTCGATGGTGCTTTTAGGAATAATG
GTCTTCCAGCTTGTGCTCCTGCTTGTTGGTGTTGTTGTTGCCACTAATGAGAGGCTTGTGGAGTCCAAGTTGTTCGAGCG
GCTTCGATCCGGCAGTGCATCTTGGTGTGATGGCGGGGATGGGCTGTTCTTGGAGTCGAGTGGTGATGACTGCTGCAGAT
TTGCGGAAGACGATGGAGGATTCAGCCGCCTGTTGAAGGGTGGGTTGGTGTTGGCCCCGAATCCGGCGTTCAAGAGGCTC
GAAGGGCTTCTCCGGCCGATGTTCCTTATCGGGCTAGATCCAGCC-TTCCGGGATTGCTGGCTATTGCGACTCGTTAACG
CCTCATGG------------------------TGTGGACCAGCTTCTGGTGTTTTTCTTCTCCCGCGATGGCGAAGATCG
TGGGTGCTAGGTAGTTGTGGCGAAGGCGGTATGCAACAGTACAATCACTTGTTTCTTCATTGTTTTCTGTTGCTTGTATG
TATTTTATCCATGTATCATTACTATCATGAATACAAGTAATATATGCCTACGGGT
>chr2D_265
TTCTT---------------------------------------------------------------------------
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-----------------------------------CACATGGAGGAAAGGGACCCATTTTCTCATACTCCCACTAAAAGT
CAGCAGCAGTGGTAAAACAAACCGCGTGGAGGACGACGAATCTTGAGTCAAGTCGTCGCGCTCGGGCGTACTTGGGAAAT
TGCCGAATCGGATGGTTTCTTCCATGGAATAATGGAATATATACATGTCGGATGGTCCCAACTCCCAAG-TGTGAATAAC
AATGTTGGCCTATTTATAGGAGTGCTTCGCTTCCTCCATTCCACCACGACGCTTAGCTTAACCAGAGCTCAAATTCTCAA
GTCAATAGCAGGCACCACCACCTCCTCCTCCAAGATCTGAATAGAGAAAAACCTCCGGCGGGAACGATGTGCGGCTGCGA
CGATTGCTGCGGCTGCATCTCATACAGGACCAGGGAGAACATCAAGTACGGCTGCATCTGCTTCGGCGTCCTCGCCGTCC
TGGCCGTCTTTGCCGTCCTCCTGGCCGCCTACGCCTTCCTCCGCCACGTCAGCATCACCGTGGAGGACGCGTCGCTGACC
AGGTTCGCACTGCTGACCACCCCGGTGACGGCGCTGGCGTACAATCTCTCGCTGACTCTCAACGTCCGCAACCCGAACTG
GGCGATGAGCATCAAGAACACGGAGCCGTTCGAGGCCGCCTACAAGTTCGACGGCCAGCAGTTCGACCGCGTGCAGGTCT
CTGACAAGGGCGACAAGCATCCCCCTCGGAAGACCATGGTTTACCGCCTTGACTCGGGATCAGACGGCGCCCTCGTGTCG
CTGGGCAACGCCGGCGTGGTGGAGTACAAGGAGGAGAACGAGACAGGTGTGTTCGAGGTGGAGGTGGCGCTGACCCGCAA
AGTGAGCTACACAGCGCGCTACACCAAGTGCAAGATCGAGGCCACCTGCAAGCTCAAGCTCAAGCTCGTGAAGCCCGAGA
CGACCACGGTGGTGTTCGAAAAAGTGAAATGCAAGCTAGAAAAGGCCGACAAAAACTGCTAGATACTTCCTCCATGTTTG
TGTGTTTGTTTGTTTCCATTC-----------------TCCCACTCTTTGATGAAAGATGTGATGATACTTTTTGATGTC
GTCTTGCTAATTCAACAGCGAGCCCCAAGGCGG------GATTCAATTTTGTAAACACATTTGTTCAATCTCATGTACTT
TAAACTTCTTCTAGCGCTACTTGAATTCGCAGCGAGCCCCAAGGC-----------------------------------
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>chr1A_1042
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---------------------------GACGAGGGATGAAGTCAAGTACCTCTTCATCTGCTTCGGCGTCGTCGCGGTCG
TGGTCCTCCTCGCCGTCCTCCTGGCCGCCTTCGTCTACCTCCGCCACGTCACCATCACCGTGGAGGACGCCTCGCTCACC
AGGTTCGACCTGCTCACCTCCCCGGTGACGGGGATCGCCTACAACCTCTCGCTCACCCTCAAGGTCCGCAACCCCAACTG
GGCGATGAGCATGAAGAACGTGGAGCCGTTCGTCGCCGCCTACAGGTTCGACGGCCAGCAGTTCGACCGCGTGCAGGTCG
CCGCCACGGGCGACAAGCACCCCGCCGGCGCCACCAGGGTGTACCACCTCACCTCCTCCTCCCAAGGCGCCTTCGTGTCG
CTGGGCAGCGCCGGCGAGCAGGAGTACAAGAAGGAGAGCAAGACGGGGACGTTCGACGTGGAGGTGGCGCTGTCCCGCAA
GGTGAGCTACACGGCGCGCTACACCAAGTGCAAGATCGAGGCCGTCTGCCCGCTCAAGCTGCAGCTCGTCAAGCCCGACG
CCACCACCGTCGTCTTCCAGAAGGTGACGTGCAAGCTACACAAGGCCGAGAAGAACTGCTAGCTA---------------
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>chr1D_1042
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---------------------------GACGAGGGACGAAGTCAAGTACCTCTTCATCTGCTTCGGCGTCGTCGCGGTCG
TGGTCCTCCTCGCCGTCCTCCTGGCCGCCTTCGTCTACCTCCGCCACGTCACCATCACCGTGGAGGACGCCTCGCTCACC
AGGTTCGACCTGCTCACCTCCCCGGTGACGGGGATCGCCTACAACCTCTCGCTCACCCTCAAGGTCCGCAACCCCAACTG
GGCCATGAGCATGAAGAACGTGGAGCCCTTCGTGGCCGCCTACAGGTTCGACGGCCAGCAGTTCGACCGCGTGCAGATCG
CCGCCACGGGCGACAAGCACCCCGCCGGCGCCACCAGGGTGTACCACCTCACCTCCTCGTCCCAAGGCGCCTTCGTGTCC
CTGGGCAGCGCCGGCGAGCAGGAGTACAAGAAGGAGAGCAAGACGGGGACGTTCGACGTCGAGGTGGCGCTGACCCGCAA
GGTGAGCTACACGGCCCGCTACACCAAGTGCAAGATCGAGGCCGTCTGCCCGCTCAAGCTGCAGCTCGTCAAGCCCGACT
CCACCACCGTCGTCTTCCAGAAGGTGAAGTGCAAGCTCCAAAAGGCCGAGAAGAACTGCTAGCTACT-------------
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-------------------------------------------------------
>chr1B_1042
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---------------------------GACGAGGGATGAAGTCAAGTACCTCTTCATCTGCTTCGGCGTCGTCGCGGTCG
TGGTCCTCCTCGCCGTCCTCCTGGCCGCCTTCGTCTACCTCCGCCACGTCACCATCACCGTCGAGGACGCCTCGCTCACC
AGGTTCGACCTGCTCACCTCCCCGGTGACGGGGATCGCCTACAACCTCTCGCTCACCCTCAAGGTCCGCAACCCCAACTG
GGCGATGAGCATGAAGAACGTGGAGCCGTTCGTGGCCGCCTATCGGTTCGACGGCCAGCAGTTCGACCGCGTGCAGGTCG
CCGCCACGGGCGACAAGCACCCCGCCGGCGCCACCAGGGTGTACCACCTCACCTCCTCGTCCCAAGGCGCCTTCGTGTCC
CTGGGCAGCGCCGGCGAGCAGGAGTACACGAAGGAGAGCAAGACCGGGACGTTCGACGTGGAGGTGGCGCTGACCCGCAA
GGTGAGCTACACGGCGCGCTACACCAAGTGCAAGATCGAGGCCGTGTGCCCGCTCAAGCTGCAGCTTGTCAAGCCGGACT
CCACCACCGTCGTCTTCCAGAAGGTGACGTGCAAGCTCCAGAAGGCCGAGAAGAACTGCTAGCTAATTACTC------T-
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>chr6A_1073
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----------------------------------------------------------TGCTTCACCGCCCTCGCCGCCG
TCATCATCATCGTCGTCATGGTCGCCGCCTACAGCTTCGCCATCCAGCCATCCATCACCGTCGAGGACGCCTCGCTGGCC
AGGTTCGCGCTGGCGACCACCCCGACGACGTCGCTCGGGTACAACCTCTCGCTGCGGCTCGTCGTCCGCAACCGCAACTG
GGCGACGACCATGAAGAACACGGAGCCGCTTGAGGCGGCGTACAAGTTCGACGGCCAGCAGTTCGACCGCGTGCAGGTCG
CCGACAAGGGCGACAAGCACGGCCCCAGGAAGACCCGGGTGTACCGCCTCGTCACGGGCCAAGAGAGCGGCTACGTGGCG
CTGGGCAACGCCGGCGTCGCCGCGTACAAGGAGCAGAACAAGACGGGGGAGTTCGAGCTGGAGGTGGCGGTCACCGGCGA
GGTGCGGTACACGCTGCAGCTGAAGAAGAACAAGCTGGCGGGGACCTGCAAACTCAAGCTTAAGCTCGACTCGCCGGCGA
CGGCCTCCGTTGTGTTCGAGAGGGTGAAATGCAAGCTCGAGAAGG-----------------------------------
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>chr3A_1889
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AGTCTGGAACCGCTCCTCTTGTGAAACCAAAGCGGAGGTGGCGGCGCTCCAGATACAGGGCGCCCGCTCGTGACTCCGCC
GCTCCCCTCCCTCTCCCGTCGCCATCTTGGCGCTGCGAGGGGGAGGGGAGCCCCAGTTTCTTAGTTGGGCATTTAACAGT
CCTAGATTTTCTAGGTTTTTCAAGTTTCCTCTTT-GGTGTCATGGTGGGGCTGATGCCGATGGTGCTCTTAGGAATAATG
GTCTTCCAGCCCATGCTCCTGCTCGTTGGTGGTGTTGCGGCCACTAATGAGAGGCTTGTGGAGTCCAAGTTGTTTGAGCG
GCTTCGATCCGGTAGTGCGTCTTGGCGTGATGGCGGGGATGGGCTGTTCTTTGAGTCGAGTGGTGATGACTGTTGTGGAT
CTGCGGAAGAGGGTGGAGGATTCGGCCGCCTGTTGAAGGGCGGGTTGGTGTTGGCCCCGGATCCGGCGTTGAAGAGGCTC
CGAGGGCTCCTCCGGCCGATGTTCCTTATCGGGCTAGATCCAGCC-TTCC-GGGGTGGTGGATATCGTGGCTCGTTGACA
CATCATGGCTAGGGGTTTCTTCAGTGTCAAGATGTGGACCAGCTTCTGGTGTTTTTCTTCTCCGGCGATGGCAAAGATCT
TGGGTGCTAGGTAGTTGCAGCGAAGGCGGTATGCAACAGTACAACCACTTGTTTCTTCATTGTTTTCTATTGCTTGTATG
CATTTTATCTCTGTATCATTACAATCATGAATACAAGTAATGTATG---------
>chr3A_1893
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----TGGAACCGCTCCTCTTACGAAACCAAAGCGGAGGCAACGGCGCTCCAGATCCAAGGCGCCCGCTGGTGACTCCGCC
GTTCCCCTTCCTCTCCGACAGCCATCTTGGCGCCGCGAGGGGGAGGGGAGCCCCAGTTTCTCAGTTGGCTGTTTAGTAGT
CCTAGGTTTTCTAGGTTTTTCGAGTTTCCTTCATCGGTGTCATGGTGGGGCTGATGCCGATGGTGCTCTTAGAAATAATG
GTCTTCCAGCCCGTGCTCCTACTCGTTGGTGGTGTTGCTGGCACTGATGAGAGGCTCGTGGAGTCCAAGTTGTTCGAGCG
GCTTTGATCCGGCGCTGCGTTTTGGCGTGATGGCGGGGATGGGCTGTTCTTGGAGTCGAGTGGTGATGGTTGTTGCAGAT
TTGCGGAAGACAGTGGAGGATTCGGCCGCCTGTTGAAGGGAGGGTTGGTGTTCGCCCCGGATCCAGCGTTGAAGCGGCTC
GGAGCCCTCCTCCGGCTGATGTTCTTTATCCGTCTAGATCCAGCATTTCG-GGGTTGGTGGCTATCGTGGCTGGTTAACG
CCTCATGGCTAGGGGTTTCTTCAACGTCAAGATGTAGACCAGCTTCTGGTGTTTTTCTTCTCCAGTGATGACAAAGACCG
TGGGTGCTAGTTAGCTGCGGCCAAGGTGGTATGCGGCAGTACAACCGCTTGTTTCTTTATTGTTTTCTGTTGCTTGTATG
CGTTTTATCTTTGTATCGTTACTATTATGAATACAAGTAATGTATGCCTACGGG-
>SNPs
SSSS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---------S------------------------S------SS-S
SSSS-S--------------------------------------------------------------------------
--------------S------------------------------------------------------S----------
------------------------------------------S----S---S--SS-SSS--S--------------S--
----------------------S----S----------------------------------------------------
---S-----------------S----------------------------------------------------------
---------------------------------------------------------S----------------------
-----S-----------S------------------------------------S-------------------------
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-----S--------------------------------------------------------------------------
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---------------------SSSSSSSSSSSSSSSSS-----------------------------------------S
--------------SS-S-S-SSSS-S-S-SSSSSSSSS-----------S-SS--S------------------S----
----SSSS----SS-S--S---S----------------S-----SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
---S-------S-------S--S-------------------------------------S--S-----S----------
S------------------------------S---------------------SS-----------------------S-
--------------S-------------S---S---S-S-----------------S----------S------------
----------SS-----------S-------S-----S------------------------------------------
------------------S------S----------------------------------------------S-------
------------S----------S----------------S------------------S----------S---------
-S------S-----------------------------------------S--S---S-------S-S-S----------
---------------------------------------------------------------S--------S-------
-----------------S--------------------------S-----------------------------------
S--------SS------------------------------S------------S
>forward_119
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-------------------GCACGTTGGGCCTTCATTTT-----------------------------------------
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>reverse_2054
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-----------------------------------------------------TGGTTTCTCAGTTGGGCGTT-------
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