>input_sequence_73291
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------------------------------------------------------------ATGGGTGTGGCTGGAACACG
GGGGGACATCGTGGCATGGGGATGGAGCATGACCGGCCGTAGGTTGGAAGAAGCTGGGAGCGAGGCAGCTCGTAGGCTGG
ATGGAGAAGAGGATGAGCGGCGCTGGCTGGTGGATAA--GGTCAAGGGAGAAGGAGCGATGGTGATGTGTGGAGAAGAGG
CACAAAGTGGTCAAATGGAGCTCTCGGTGGGG------ATTGCTACTGCTATTTTTTAATGAACTGTTGCTAGATATGGC
TGCTGCTAGATGTCGCTTTGCATACAATTGCGACGCTGCTGTTTGTCTGGACTGCCATGGTTTAATGTTTCTGCTAGAAG
ATGATGCTCTATTGCCATTGTTGCCAAGTACAACATATAAAGTAAATTTCATGGGCATTGGTGTACGCTTAAGTTTCATT
ATCATATGAAGTGTGCACATGCTTCAAAAAGTCATTTTTTTTCTTCCTGTCAGATAAATTATCTGCAACAGTGATTGAAT
CTTTGCAAAAAGTAAATATTTTCTCGGGAAGTATTTATGTTCTATCTGAATATGTGATGTCGCGCGTAGCACTATAGTCT
TCGATGGAGTTTTTATACTGAAAGACGCTTTGTGATTATTTTTTGTGCAGGGATACACTTTGTGA---------------
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>chr3A_1_TraesCS3A01G396700
GACCAAAAATTAGCATGTATGTACCATTGCTCATAATTCAAATAATATCTGAAAATCCTTTAAATTAGTAATTAAATTCT
TGAAGAATATGCTTCGAAGTTGAGAAAATAGGCACCCGACATGAAGTTCTCCCCTTCCTCTCCAACCGCAGCCCTTCTAC
CATATGTTTATCCCACTCAAAAACTCTTCCACGCACAACTCAAATTCAACCCTAGGGTAGCGGGGTTCTTGAAGGAGGCA
TCGTTTGAGGGAATGAGTACAATTCTTCACATCTATGGCCCATGGTCCAGATAATGGCAATCCTAAATGGGCCACCGCCA
AAATGAAGACTGAACTCCGGTTAAATTCTCCGGCCAAAACATCCAAATAAATCAACCCGTAGCAATGCACGGGCCCTTTT
GCTAGTAATAAAGCACGGATTGAGTCTCCGGGTTCACCGTCGCGCACCTTTTGCAAAAAAGCCCCTGGTATTCCCTGGAA
TTAACCCGCACTCCGTGATGTTCTTCTGCAAAAG-ACACGATTCGACAATCCCTGTGTCTTCCGCAAGATAACTCGAGAC
G-CCTGGTGTTTGGGTTGCCTCCGCCGCCACGCCCCCATCCCTCCCACACCGCGGTA-----------------------
-----------------------------------------------------------------------GGGCAAGCT
CCTGTAGGTATGCGCCAAACCAGAGAGAGAGGGATTGAGAGAAAGAGAGATGCAGGAGAGAGAGAGAGAGAGAGAGAGAG
AGAGAGAGAGAGAGAGAGAGAGAGACTGGAGGGAAGGAGAGGACGAGGAGCAGGAGAAGTGAGGCGCATGATAGAGAGAG
GACCGAGGGAAGGAGGAAGAGGAGAGATGG-AGGGACGGCCGGTGTGGTTGCTCCGGTAACGGAGTCCGGCGGGATCGGC
GGCGTTTATCGCCCTTGCCGCGGTCGGGGAAGAGGAACGGAGCCATGGGTGTGGCTAGAACACGGGCG---GGCGGGGGG
AGCACGGGGATCGTGCGGCAGCAATCGCCCTGGCAATGGTCGGGGTAGAGGAACGGAGCTATGGGTGTGGCTGGAACACG
GGGGGACATCGTGGCATGGGGATGGAGCATGACCGGCCGTAGGTTGGAAGAAGCTGGGAGCGAGGCAGCTCGTAGGCTGG
ATGGAGAAGAGGATGAGCGGCGCTGGCTGGTGGATAA--GGTCAAGGGAGAAGGAGCGATGGTGATGTGTGGAGAAGAGG
CACAAAGTGGTCAAATGGAGCTCTCGGTGGGG------ATTGCTACTGCTATTTTTTAATGAACTGTTGCTAGATATGGC
TGCTGCTAGATGTCGCTTTGCATACAATTGCGACGCTGCTGTTTGTCTGGACTGCCATGGTTTAATGTTTCTGCTAGAAG
ATGATGCTCTATTGCCATTGTTGCCAAGTACAACATATAAAGTAAATTTCATGGGCATTGGTGTACGCTTAAGTTTCATT
ATCATATGAAGTGTGCACATGCTTCAAAAAGTCATTTTTTTTCTTCCTGTCAGATAAATTATCTGCAACAGTGATTGAAT
CTTTGCAAAAAGTAAATATTTTCTCGGGAAGTATTTATGTTCTATCTGAATATGTGATGTCGCGCGTAGCACTATAGTCT
TCGATGGAGTTTTTATACTGAAAGACGCTTTGTGATTATTTTTTGTGCAGGGATACACTTTGTGAACTCTTCATATTTTC
ATTTACCTGAAGTTTGTAGCCCTCAAGCTAAAAGTAAATACTTATTCCTCTCTGTCTGAAGAAATTTTTATCATCAATCT
TACAGCCTTTTTACTTCTGGCGACGTCCTTTTTCTTGCAGGGATACACTTCGTGAAGTCTTCATATTTTCATTTACCCGA
AGTGTGTAGCCCTCAAGCTAAAAGTAAAAACTTATTCCTCTGTCTGAAGAAGTTTTTAATCAGCAATCTTGCAGCTTTTT
ACCGAGGTCCCTTTGTGAGTTGTAAACTTTAAAATGTCCTTTGTTTGTTTGAAGATATTAACAGTTTCATCTTCCGGCTT
TCCAAATTGTAACATTTCTTAGTTAGTGAATTACTTAGTTAAATAACTTGTGCATTTTGTATACCCAAGGGTGATGGTTC
CTCGCACAAATGTTGCTTAGCTTTGGCTGAACTTGCTCGGAGGGGTTTCTGTTGCCTTGTAACTTTTCTGATGTTTGAAG
CCCATGCTCCTGCTATAACCACATCCACATCTCCCTGGACGGTCAGT--GTTTTTTTGCTAACTTTCTTTTCTAAGAATA
TATA----------------------------------------------------------------------------
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------------------------------------------------------------------------ATATACAC
ACTGGATGACCAGCTGCACATCCACATGAGTTGTTCCACCCATAATAATTTATAAATTGCAACATTTGAAATTCAAATAT
-ATACTTACTTGAACGATATAGTTGATTGAATTTTGCAGTGCATATTTGGTTAATTTTATATACACATCAAAAAAATTGT
TCCGTTGCAACACACGGGCATATGTGCTAATATCACCTATAAGTCTACCATTTTTGTATCTCAAGTATATAAGAGCAACT
CTAACGCATCCCCACTACTAGGGAAAAGGCTAGCAGCAGCGCGGGTGCCCGCGCTACCAATAAGACGCTACAGCTAACTT
TTAGTAGTAGCGCTGCCTGTACCCGCGCTACCACTATTGACTATAGCAGCATCGCTTTTCAGGAACGCGCTGCTATTACT
TAGCTGTAGCGATTTC
>chr2A_402
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-CTAATAATAAAGCACGGATTGAGTCTCCGGGTTCATCGTCGCGCACCTTTTGCAAAAAAGCTCTTGGTATTCCCTGGAA
TTAACCCGCACTCCATGATGTTCTTCTGCAAAAAAACACGATTCGACAATCCCTGTGTCTTCCGCAAGATAACTTGAGAC
G-CCTGGTGTTTGGGTTGCCTCCGCCGCCATGCCCCCATCCCTCCCACACTGCGGTGCACGGGGCAGGGGGAACCGGGCG
A----------------------------------------------------------GGTTTCCGGCAGGGGCAAGCT
CTTGTAGGTATGCGCCAAATCGA--AGAGAGGGATTGAGAGAAAGAGAGATGCAGGG-----------------------
-----------GAGAGAGAGAGAGACTGGAGGGAAGGAGAGGACGAGGAGCAGGAGAAGTGAGGCGCATGATAGAGAGAG
TACCGAGGGAAGGAGGAAGAGGAGAGATGGT-GGGACGACCGGTGTGGTTGCTCCGGTGACGGAGTCCGGCGGGATCGGC
GGCGTTTATTGCCCTTGCCGCGGTCGGGGAAGAGGAACGGAGCCATGGGTGTGGCTAGAACACGGGCG---GGC-GGGGG
AGCACGGGGATCGTGCGGCAGCAATCACCCTGGAAACGGTCGGGGTAGAGGAACGGAGCTATGGGTGTGGCTGGAACACG
GGGGGACGTCGTGGCATGGGGATGGAGCATGACCGGCCGTAGGTTGGAAGAAGCTGGGAGCGAGGCAGCTCGTAGGCTGG
ATGGAGAAGAGGATGAGCGGCACTGGCTGGTGGACAA--GGTCAAGGGAGAAGCAGCGATGGTGATGTGTGGAGAAGAGG
CACAGACTGGTCAAATGGAGCTCTCGGTGGGG------ATTGCTACTGCTATTTTTTAATGAACTGTTGCTAGATATGGC
TGTTGCTAGATGTCACTTTGCATACAATTGCGACGCTGCTGTTTGTCTGGACTGCCATGGTTTAATGTTTCTGCTAGAAG
ATGATGCTCTATTGCCATTGTTGCCA-------CATATAAAGTAAATTTCATGGGCATTGGTGTATGCTTAAGTTTCATT
ATCATATGAAGTGTGCACATGCTTCAAAAAGTC-A-TTTTTTCTTCCTGTCAGATAAATTATCTGCAACAGTGATTGAAT
CTTTGCAAAAAGTAAATATTTTCTCGGGAAGTATTTATGTTCTATCCGAATATGTGATGTCGCGCGTAGCACTATAGTCT
TCGATGGAGTTTTTATACTGAAAGACGCTTTGTGAT----TTTTTTGCAGGGATACACTTTGTGAACTCTTCATATTTTC
ATTTACCTGAAGTTTGTAGCCCTCAAGCTAAAAGTAAATACTTATTCCTCTCTGTCTGAAGAAATTTTTATCATCAATCT
TACAGCCTTTTTACTTCTGGCGACGTCCTTTTTCTTGCAGGGATACACTTCGTGAAGTCTTCATATTTTCATTTACCCGA
AGTGTGTAGCCCTCAAGCTAAAATTAAATACTTATTCCTCTGTCTGAAGAAGTTTTTAATCAGCAATCTTGCAGCTTTTT
ACCGAGGTCCCTTTGTGAGTTGTAAACTTTAAAATGTCCTTTGTTTGTTTGAAGATATTAACAGTTTCATCTTCCGGCTT
TCCAAATTGTAACATTTCTTAGTTAGTGAATTACTTAATTAAATAACTTGTGCATTTTGTATACCCAAGGGTGATGGTTC
CTCGCACAAATGTTGCTTAGCTTTGGCTGAACTTGCTCGGAGGGGTTTCTGTTG--------------------------
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>chr7D_504
TTCTGATAAAAG--------------------------------------------------------------------
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------------------------------------CATGATTTGGCAAGCCCTCTGTCTTCCGCACGATAACACGAGAC
GCCCTGGCGTTAGGGTTGCCTCCGCCGCCACGCCCCCATCCCTCCCACACTGCGGTGCACGGGGCAGGGGGAACCGGGCG
ACGGCGGCGGCGGCGTGATCTACGGCATGTCGACGGTTTCATTCCCTGTGGTGGAAGGAGGTTTCTGGCAGAGGCAAGCT
CCTATAGGTATGCGGCGAACCGGAGAGAGAGGAATTGAGAGAAAGAGAGATGCAGGG-----------------------
-------------GAGAGAGAGAGACTGGAGGGAAGGAGAGGACGAGGAGCGAGGGAAGTGAGGCGCAGGAGAGAGAGAG
GACCGAGGGAAGGAGGAGAAGGAGAGATGACAGGGACGGCCGGTGTGGTTGCTCCGGTGACGGCGTCCGGCGGGATCAGC
GGCGTTTATCGCCCTTGCCGCGGTCGAGGA--------------------------------------------------
--------------------------------------GTCAGGGTAGAGGAACGGAGCTGTGGGTGTGGCTGGAACATG
GGGAGACGTCGTGGCATGGGGATGGAGCACGACCGGCCGTAGGTTGGAAGGAGCTGGGGGCGGGGCAGCTCGTAGGCTGG
ATGGAGAAGAGGATGAGCGGCGCTGGCTGGTGGATAAAAAGTC-CGGGAGGAGGAGCGATGGTGATGTGTGGAGAAGAGG
CACACACTGGTCAAAAGGAGCTCTCGGTGGGGATTGCTATTGCTACTGCTACTTTTTAATGAACGGTTGCTAGATCTGGC
TGCTGCTAGATGTCGCTTTGCATACAATTGCGACACTGCTGTTTGTCTGGACTGCCATGGTTTGATGTTTCTGCTAGAAG
ATGATGCTCCATTGCCATTGTTGCCAAGTACATCATATAAAGTAAATTTCATGGGCATTGGTGTACGCTTAAGTTTCATT
ATCATATGAAGCGTGAACATGCTTCAAAAAGTCAA-TTTTTTGTTCCTATCAGATAAATTATCTGCAACAGTGATTGAAT
ATTTGCAAAAAGTACATATTTTCTCACTAAGTATTTATGTTTTATCCGAATATGCGATGTCGTGCGTAGCACTATAGTCT
CCGATGGAGTTTTTATACTGAAAGACAC----------------------------------------------------
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-------------------------------------------------------------------------------C
CTCGTACAAATGTTGCTTAGCTTTGGCTGAACTTGCTCGGAGGGGTTTCTGTTGCCTTGTAACTTTTCTGATGTTTGAAG
CGCATGCTCCCGCTATAACCACATCCACATCTCCCTGGACGGTCTGTGCGTGTTTTTGCTAAC-TTCTTTTCTAAGAATA
TATATA--------------------------------------------------------------------------
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----------------------------------------------------------------------TAATATACAC
AATGGATGACCAGCTGTAAATCCACATGAGTTGTTCCACCCATAATAATTTATAAGTTGCAACATTCAAAATTCAAATAT
AATACTTACTTGAACGATATAGTTGATTGAATTTTGCAGTGCATATTTGGTTAATTTTATATACACGTCAAAAAAATTGT
CCTCTTGCAACGCACGGGCATA----------------------------------------------------------
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>chr1A_510
-------AAAAA--------------------------------------------------------------------
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------------------------------------CATGATTCAGCAAGCCCTCTGTCTTCTGCACGATAACACGAGAC
GCCTTGGCGTTAGGGTTGCCTCCGCCGCCACGCCCCCATCCCTCCCACACCACGGTGCACGGGGCAGGGGGGATCGGTCG
ACGG---CGGCGGCGTGATCTCCGACATGTCGACAGTTTCATTCCCTATGGGGGAAGGAGGTTTCTGGTGGCGGCAAGCT
CCTGTAGGTATGCGGCGAACCAGAGAGAGAGGAATTGAGAGAAAGAGAGATGCAGGG-----------------------
------------AGAGAGAGCGAGACTGGAGGTAAGGAGAGGACGAGGAGCGAGGGAAGTGAGACGCAGGAGAGAGATAG
GACCGAGGGAAGGAGGAGAAGGAGAGATCACAGGGACGGCCGGTGTGGTTGCTCCAGTAACGGCGTCCGGCGGGATCGGC
GGTGTTTA-------------------GGAAGAGGAACGGAGCCATGGGTGCGGCTGGAACACAGGCGGGCGGG-GGGGC
AT----GGGGGCGTGCTGCAGCAATCGCCCTGGCAACGGTCAGGGTAGAGGAACGGAGCTGTGGGTGTGGATGGAACACG
GGGGGACGTCGTGGCATGGGGATGGAGCATGACCGGCCGTAGGTTGGAAGGAGCTGGGGGCGGGGCAGCTCGTAGGCTGG
ATGGAGAAGAGGATGAGCGGCGCTGGCTGGTGGATAAAAGGTCACGAGAGGAGGGGCGATGGTGATGTGTGGAGAAGAGG
CACACACTGGTCAAAAGAAGCTCTCGGTTGGG------ATTGCTACTGCTACTTTTTACTGAACAGTTGCTAGATCTGGC
TGCTGCTAGATGTCGCTTTGCATACAATTGCGACGCTGCTGTTTGTCTGGACTGTCATGGTTTGATGTTTCTGCTAGAAG
ATGATGCTCCATTGCCATTGTTGCCAAGTACATCATATAAAGTAAATTCCATGGGCATTGGTGTACGGTTAAGTTTCATT
ATCATATGAAGCGTGAACATGCTTCAAAAAGTCAATTTTTTTGTTCCTATTAGATAAATTATCTACAACAGTGATTGAAT
CTTTGCAAAAAGTACATATTTTCTCAGGAAGTATTTATGTTTTATCCGAATATGTGATGTCGTGCGTAGCACTATAGTCT
CCGATGGAGTTTTTATACTGAAAGACAC----------------------------------------------------
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-------------------------------------------------------------------------------C
CTTGTACAAATGTTGCTTAGCTTTGGCTGAACTTGCTCGGAGGGGTTTCTGTTGCCTTGTAACTTTTCTGATGTTTGAAG
CGCATGCTCCCTCTATAACCACATCCACATCTCCCTGGACGGTCTGTGCGTGTTTTTGCTCACTTTCTTTTCTAAGAATA
TATTTATACCTACTATTAAAGGAAATAGGTATTTTTGGTTTGGTTTAGTCTTTTTCGTTTGGTTTACACACGTTAAGCGA
TCTGGGCCAAGTACTTGTATGTTGATGGGCCTTTTATAGGCTTTCATAGAGACCGTGGAAAATAATTGGGTCTAAATAAA
TCAACATTGTGGGAATTGAACACAGGACCTACACGCCTTTTTATTTACTAATCCCAATTCACTATAAATATACGAGTAGC
AGTCATTATGTTTAGGGTGAGCTAATTAAACGAATAAGCTAATAAAGGAAGGATTGTGGGCCTAAATAGAATATTTAAAC
GGATGTGGCTAATTAAAGAAAAGATTATGGGTAAACCGGTGAAATAACTAAAAGAAAATTTGTGGTCTTAATAAATTCTA
CATGAAGGATTTGAGGTACTACCTCTGTCTCGGTGTGTGAGTCATTCGTGTACTTCTAAATCATCGATTTGAGAAATTAA
ATATGTGTTATATGCCATGAAAAGTATATCACTAGATTTCTACACGGATGTAGTTTTTAAATATATTTTTTATCATATAT
AGGTTGTGAGACATTATGCTTGCACAAAACATCAATTTTTTCCGTTGCAACGCACGGGCATATGTGCTAGTAATATACAC
AATGGATGACCAGCCGTACATCCACATGAGTTGTTCCACCCATAATAATTTATAAGTTGCAACATTCAAAATTCAAATAT
AATACTTACTTGAACGATATAGTTCATTGAATTTTGCAGTGCATATTTGGTTAATTTTATATACATGTCAAAAAAATTGT
CCTCTTGCAACGCACGGGCATATGT-------------------------------------------------------
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>chr6B_510
-------AAAAA--------------------------------------------------------------------
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------------------------------------CACGATTCGGCAAGCCCTCTATCTTCCCCATGATAGCACGAGAC
GCCCTGGCGTTAGGGTTGCCTCCGCCGCCACGCCCCCATCCCTCCCACACCGCGGTGCACGGGGCAGGAGGGACCGGGCG
ACGG---CGGCGGCGTGATCTCCGGCATGTCGACGGTTTCATTCCCTATGGTGGAAGGAGGTTTCTGGCGGCGGCAAGCT
CCTGTAGGTATGCGGCGAACCAGAGAGAGAGGAATTGAGAGAAAGAGAGATGCAGGGGAGA-------------------
-----------GAGAGAGAGAGAGACTGGAGGGAAGGAGAGGACGAGGAGCGAGGGAAGTGAGGCGCAGGATAGAGAGAG
GACCGAGGGAAGGAGGAGAAGGAGAGATGACAGGGACGGCCGGTGTGGTTGCTCCGGTGACGGCGTCCGGCGAGATCGGC
GGCGTTTATCGCCCTTGCCGCGGTCGAGGAAGAGGAACGGAGCCATGGGTGCGGCTGGAACACGGGCG---GGG-GGGGC
AC----GGGGGCGTGCTGCAGCAATCGCCCTGGCAACGGTCAGGGTAGAGGAACGGAGCTGTGGATGTGGCTGGAACACA
AGGGGACGTCGTGGCATGGGGATGGAGCACGACCGGCCGTAGGTTGGAAGGAGTTGGGGGCGGGGCAGCTCGTAGGCTGG
ATGGAGAAGAGGATGAGCGGCGCTGGCTGGTGGATAAAAGATCACGGGAGGAGGAGCGATGGTGATGTGTGGAGAAGAGG
CACACACTGGTCAAAAGGAGCTCTCGGTGAGG------ATTGCTACTGCTACTTTTTAATGAACGGTTGTTAGATCTGGC
TGCTGCTAGATGTCGCTTTGCATACAAT----------------------------------------------------
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>SNPs
SS-SS-S--SS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
S---S-------------------------------S-------------------------S-S---------------
--------------S------------------S----------------------------------------------
--------------------------------------------------------S-----------------------
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--------------------------------------------------------S----SSSSSSSSSSSSSSSSSSS
SSSSSSSSSSS---------------------------------------------------------------------
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--------------------------------------------------------------------------S-----
------------------------------------S-------------------------------------------
-------S------------------------------------------------------------------------
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----S-S-------------------------------------------------------------------------
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--------------------------------S-----------------------------------------------
----------------------------------S---------------------------------------------
----------------------------------------------S---------------------------------
------------------------------------SSSS----S-----------------------------------
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-----------------------S----S---------------------------------------------------
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-------------------------------------S------------------------------------------
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-S--------S---------------------------------S------S----------------------------
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-S--------------S--------------------------------------S----------SS------------
------------------------------------------------------------------S-------------
S-SS-------S-------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSS
>forward_291
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-------------------------------TCTATGGCCCATGGTCCAGA-----------------------------
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>reverse_1647
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----------------------------------------------TGAATATGTGATGTCGCGCG--------------
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>forward_365
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-------------------------TTCTCCGGCCAAAACATCCA-----------------------------------
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>reverse_2242
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-CCATGCTCCTGCTATAACCACA---------------------------------------------------------
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