>input_sequence_73253
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--------------------------------ATGGCTCGGCCGCAGCAGCGGTACCGTGGCGTGCGGCAGCGCCACTGG
GGCTCCTGGGTCTCCGAGATCCGC------CACCCCCTCCTGTGCGTACCTAC--CTACCTAGCC-ATGCACGCGTGCGA
CTTCGTCGATCTCTCT----GACGCGCTTACGGTGATTCTT---GGTCGCTGGTGGCTCACCGTGATCAGGACTGACGGT
GATGACGGTG----GTTGCAG---------GAAGACGCGGATCTGGCTGGGCACCTTCGAGACGGCGGAGGACGCGGCGC
GGGCGTACGACGAGGCGG--CAAGGATCATGTGCGGCCAGCGCGC-GCGCACCAACTTCCCCGCCGTTGCCGCCG---CC
GGCAGCG------TCTCCTCCTCCTCCTCC------GCGGCCGTGGCGTCCTCGTTCCTCTCCGCCGCCCTCGTCGCGAA
GCTGCACCGGTTCAACATGGCGTCCGTGCAGGCGGCGCAGCGGCAGAGGGAGGCCGCCGCCGCCGCGGCCTCGGCGGCGG
CGGCCACGGCAGCCGCAATGCCGCCGGGCGGCGCCCACGCGGGGCCGACGCTGCCGTCATCGACGGGGTGGGTCGGGACG
CTCCTCGAG------GAGCAGCACGTGGAGCAGATGATCGCGGAGCTGCTCGACTCCGACTTCTCCATGGAGATCTGCCA
TTAG----------------------------------------------------------------------------
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>chr6D_1_TraesCS6D01G343800
GATAGCGCGTACTACGCCGGCTGGATCCGGTTGCATGCACGGTGCTGG--CTGCATGTGAGCTTGTTTGTCCGGCCTGCA
CGTTGCTGATCCTAGCTATGGCCACAGAAAACGCCATGCCCAGTCTTTA---------GCAGCAGCAGGGCATGCATGCA
TAGACGGGAAAAGGGCAAGGAGAACCCGTGCATGGCTATCTATCTAGGAGTACATGTCAATACATATCTACTA---GTAT
ATGTCTATATCTTA----------------------------------------------------------TTTCTCTG
TATAAGAAAAAGTC----TCCCTCCATACTTAACA-----ATTGCCTTGGCTCAACTT-TTGCTGTTAAACATGGCAACT
TTGTCCCAGTTCGTTTTTCTTGTCAGAAAATTGCTATGTTTGCCAACCTCGCGTGAACTAAAATTGTCATGAAAAATATT
CGGATTGCCATGCTTAAAATCCGAACGTTTGGGATTTATCATTTCCGCAACTTTTTTTCTCTCAAGAGACATGTCAGAAG
AAAGCTGAGAAAAAAATTGCGCA---------------------------------------------------------
----------------------------ATATGAAATTTCGAATTTCAAGCATGAACGAACGATGTCGAACCCAAGCCAC
ACGTTTCGTTGGAACAAAAGGATAACCCAAGCC-ACATGCATGGAGAGTCGCCGCAGGAAGAACAGTCGAGCCAAAACGA
GCTAAACAAAGATATCGGGTGGGTCCGACGGTGTCCTCCCCGGGCCCGGCGAACATGCACCCAACGCCGTC---------
-----GTAGCGCCTAGTCGCTTGCGCGGGGCCCATCCAAACACCCCGCAGATTCCCACTTCCACAGTCCCGCCGCACTTT
AATCTCCCCTG-----TTATTTATACCTCCCGCGCCCGCGCCATGGCTCACGCACCGCCGCCAC-------AACGCAGAA
CGCACTCCCCTGCTGCTCCCGCCAAGCTTGCT----------------------------C-TCACGCCTCCGGCGTGT-
---CCATGCACAGCAGCATAATCAGGAGCACGAAG-----ACGAAGACGGAGGCCTGCGCCGGTCCGTTTCTGGTCGCCG
CGATCGGCGGAGGCAGCGTCGCCGCGGCGCAAATGGCTCGGCCGCAGCAGCGGTACCGTGGCGTGCGGCAGCGCCACTGG
GGCTCCTGGGTCTCCGAGATCCGC------CACCCCCTCCTGTGCGTACCTAC--CTACCTAGCC-ATGCACGCGTGCGA
CTTCGTCGATCTCTCT----GACGCGCTTACGGTGATTCTT---GGTCGCTGGTGGCTCACCGTGATCAGGACTGACGGT
GATGACGGTG----GTTGCAG---------GAAGACGCGGATCTGGCTGGGCACCTTCGAGACGGCGGAGGACGCGGCGC
GGGCGTACGACGAGGCGG--CAAGGATCATGTGCGGCCAGCGCGC-GCGCACCAACTTCCCCGCCGTTGCCGCCG---CC
GGCAGCG------TCTCCTCCTCCTCCTCC------GCGGCCGTGGCGTCCTCGTTCCTCTCCGCCGCCCTCGTCGCGAA
GCTGCACCGGTTCAACATGGCGTCCGTGCAGGCGGCGCAGCGGCAGAGGGAGGCCGCCGCCGCCGCGGCCTCGGCGGCGG
CGGCCACGGCAGCCGCAATGCCGCCGGGCGGCGCCCACGCGGGGCCGACGCTGCCGTCATCGACGGGGTGGGTCGGGACG
CTCCTCGAG------GAGCAGCACGTGGAGCAGATGATCGCGGAGCTGCTCGACTCCGACTTCTCCATGGAGATCTGCCA
TTAGCCAAGCCAGCCATGCAGC-----GTGCTCTGCTTCCTCTGCCTCTGCTCGA-CTCCCTCTCTGTTTCTTGGCGCGA
ACGATCGATCACTGGTCACCGCGCGCGTCCAGTGTAGCGTAGCGTAGTGTAGTAGCTGCATATTACAGTCAGTGAGCTAT
GTGATGTGAACACCGGAGAAGAGCTCGTATTATTAGTTCAGTCAAGAGTTCTTCTACGCTAGTGATCGTACAGAATAACT
GTACGACGTATTTAGCATCTATATATCCATTTAGCATCTATATATCCAAAGCCTATACACCCTACGGTAACAAGTCTAAT
CCTCTCTGTTTTTACTAGTACCTTTTACGGTGCTCGGCTCAGCTCTGATTCTAGTCTACGTGCTTTGTGTAGATTTTGTT
TTAGCCAGCCATCTGATCTGC------CGCCCTCGAGAGTCAAGACATCAAATCAAACATAAAAATAGCACAAGGTAACG
TGCGATGCTTAACTGAAGCGAAACCGATCAATGGCGTGCTAAACTGAAACGA---AACCAATCAGTGGCGTGCTCCTGGA
TTTGCTAGCCG-----GATAATAAATCAGCCAGACACGCCTACGA-ATGAACCATC-TCCTGGGAAATCAATGCA-----
--------------CACGCACATGGCTCGATCGTCGACAGAATTATCCCCATACCATACATGCCATGGACTGAATTTCTC
TGTGTCGTTAGTTGGCTCCTCATTGCAGTGGTGCT-ATCAGATAGTGGGCGCAGCATTTCTTTGTGGTGTGTTTGCG-AC
ATGATTGTGCTGATGCTGCATATCTAGAGAGGATTAGCCCCATCATGGCCGGCCACATGACCCTGCCAATACCGGGCAGC
ACCACCCCTGAAGGGACATCAGGGAGTATCAGGCGTCGTGTGTCCGTCGAAA-CCTCACACCCACCACCTTCAGCTTGGA
TGTG--------TTCAGGTCCACCGAGGA---ATGGCTGATTGGTTGGCGGGCCAAGGGAGACCGGAGGAGATGAGCTGG
TGTCCCAGTTGGTGGTCTG
>chr6B_14
-------------ACGCCGGCCGGACCCGGTTGCATGCACGGTGCTGCGCCTGCATGTGAGCTTGTTTGTCCGGCCTGCA
CGTTGCTAATCCTAGCTATGGCCACAGAAAACGCCATGGCCAGTCTTTA---------GCAGCAGCAGCGG-GGCGTGCG
TAGACGGGAAAAGGGCAAGGAGAACCCGTGCATGGCTACCTGTCTACTCCTACATGTCAATACATATCTACCAATACTAT
ATGTCTATATCT-------------------------------------------------------TAGTATTTCTTTC
TATAAGAAAAAGTC----TTCCTCCTACACTTAACAAGAGGTCGCCTTGGCTCAACTT-TT-------------------
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-------------------------------------------------------TTCCTCTCAAGAGGCATGCCAGTGC
AAAGTTGAGGAACAAATCGTGCCAAGTTATAGTTCGGGAGAAAAAAA--GTAGACATCTCTTGTATG--TATGTATGTCA
AAATTGCATGCTAGTAGACTCATTTGGCATATGAGATTTCAAGTTTCAACCATGAATT----ATGTCGAACCCAAGCCAC
AAATTTCGTTGGGAAAAA--GATAACCCAAGCC-ACATGCATGGAGAGTCGCCGCAGGAAGAACAGTCAAGCCAAAACGA
GCTAAACAAAGATATCGGGTGGGCCCGGCGACGTCCTCCGCGGGCCCGGCGAACATGCACCCAACGCCCGCCGTCGTAGC
GCCTAG-------TAGTCGCTTGCGCGGGCCCCATCCAAACACCCCGCAGATTCCCACTTCCGCAGTCGCGCAGCACTTC
AATTTAATTTCCCTCCTTATTTATACCT------CCCGCGCCATGGCTCACGCACCGCCGCCAC-------AACGCACTT
CC--CTCCCCTCCTGCTCCCGCCAAGCTTGCT----------------------------CGCCACGCCTCCGGCCTGCC
TGCCCATGCACGGCAGCATAATCAGGAGCACGAAG-----ACGAAGACGGAGGCCTGCGCCGGCCAGTTTCTGGTCGCCG
CGATCGGCGGAGGCAGCGTCGCCGCGGCGCAAATGGCTCGGCCGCAGCAGCGGTACCGCGGCGTGCGGCAGCGCCACTGG
GGCTCCTGGGTCTCCGAGATCCGC------CACCCTCTCCTGTGCGTTCCTAC--CTACCTAGCCCATGCACAGCACG--
--------ATCTGTCTGATCGATGCGCTTACGGTGATTCTT---GATCGCTCGTGGCTC----------------ACGGT
GATGACGGTG----GTTGCAG---------GAAGACGCGGATATGGCTGGGCACCTTCGAGACGGCGGAGGACGCGGCGC
GGGCGTACGACGAGGCGG--CGAGGATCATGTGCGGCCAGCGCGC-GCGCACCAACTTCCCCGCCGCTGCCGCTGCCACC
GGCAGCG------TCTCCTCCTCCTCC---------GCGGCCGTGGCGTCCTCGTTCCTCTCCGCCGCGCTCGTCGCGAA
GCTGCACCGGTTCAACATGGCGTCCGTGCAGGCCGCGCAACGGCAGCGAGAGGCCGCCGCGGCCGCGGCCTCGGCGGCGG
CAGCCACAGCGGCCGCAATGCCGCCGGGCGGCGCCCACGCCGTGTCGCCGCTGCCGTCGTCGACGGGGTGGGTCGGGACG
CTCCTGGAG------GAGCAGCACGTGGAGCAGATGATCGCGGAGCTGCTCGACTCCGACTTCTCCATGGAGATCTGCCA
TTAGCCCTACCTTAGCTAGCCAGCGTGGTGCTCTGCTTCCTCTGCCTCTGCTCTACCTCCGTCTCCGTTTCCTGGCGCGA
ACGGTCGATCGCCGCTTAGTGTAGT------------------GTAGCGTAGTAGCTGCGTATTACAGTCAGTGAGCTAT
GT-----------------------------------------------------ACACGAGTGATTGTACAGAATAACT
GTACCTCGTATTAGCGTCTATCCATAGCT--------------------------TATACCCTACGGTAACAAATTTGAT
CCTCTCTGTTTTTAC------CTTTTACAGTGCTCGACTCACCTCTGATTCTAGTCTACGTGCTTTGCGTAGCTTTTGTT
TTAGCCAGCCATCTGATCTGCCGCCCTCGACCTCGAGAGTCAAGACATA-----AAACATAAAAATAGCACAAGGTAACG
TGCGATGCCGAATAGATCAG---CCAATCAGTGGCGTGCTA-ACTGAGACGA---AACCAATCAGTGGCGTGCTCCTGGA
TTTGCTAGCCG-----GATAATGAATCAACCAGACGAGCCTTGTCGATGAACCATCTTCCTGGGAAATCAGTGCACTGCG
ACTAGGTACGCACGCACGCACATGGCTCGATCGTCGACAGAGTCCCCCCCATACCATACATGCCATGGACTGAATTTCGC
TGTGTC----GTTGGCTCTTCAGTGCGGGGGGTACCATCAACTCGTGGGCGCAGCATTTCGTTGTGGTGTGTTTGTTAAC
ATGATTGTGCTGATGCTGCATATCTGGATTGGATTAGCCACATCATGGCCGGCCACATGACCCTGCCAATTCCGGGCAGC
GAAGACGAAGGGGAC------------ATCAGGCGTCGTGTGTCCGTCGAAAGCCCCACCGCCACCACCTTCAGTTTGGA
TGCGTTCTGGGCTTCAGGTCCACCGAGGATGAATGGCTGATTAGTTGGGGGGCCAAGGGAGACTGGAGGAGATGAGCTG-
-------------------
>chr6A_23
----------------------GGATCCGGTTGCATGCATGGT----G--CTGCATGTGAGCTTGTTTGTCCGGCCTGCA
CGTTCCTAATCCTAGCTATGGCCACAGAAAACGCCATGCCCAGTCTTTATTAGCAGCAGCAGCAGCAGCAG-TGCATGCA
TAGACGGGAAAAGGGCAAGGAGAACCCGTGCATGGCTATCTAT------CTACATGTCAATACATATCTACTACTAGTAT
ATGTCTATAACTTACTCCCTCCTTAAACTAACATAAGAGCGTTTAGATCACTACTTTACAGAGGGAGTAGTATTTATCTC
TATAAGAAAAAAAGGTCTTCCTCCTATACTCAACA-----GTCGCCTTGGCTCAACTTGTT-------------------
--------------------------------------------------------------------------------
-------------------------------------------------------TTCCCCTCAAGAGGCATGCCAGTGC
AAAACTGAGGAAAAAGCTGTGCCAAGTTATAGTTTGGTGGGGGGTGGGGGTAGACATCTCTTGTATGTATATGTATGTCA
AAATTGCATGCTAGAA---TCATTTGGCATATGAAGTTTCAGGTTTCAACCATGAA----------------------AC
ACATTTCGTTGGAACAAAAGGATAACCCAAGCGAACATGCAGAGAGAGTCGCCGCAGGAAGAACAGTCAAGCCAAAACGA
GCTAAACAAAGATATCGGGTGGGCCCGACGACGTCCTCCGCGGGCCCGGCGAACATGCACCCAACGCCGTC---------
-----G-------TACTCGCTTGCGCGGGCCCCATCCAAACACCCCGCAGATTCCCACTTCCGCAGTCCCGCCGCACTTT
AATTTCCCCTG-----CTATTTATACCTCCCGCGCCATGGCG--GGCTCAGGCACCGCCGCCACGACGCAGAACGCACT-
------CCCCTCCTGCTCCAGCCAAGCTCGCT----------------------------C-GCTCGCCTCCGGT---CC
TGCCCATGCACGGCAGCATAATCAGGGGCACGAAG-----ACGAAGACGGAGGCCTGCGCCGGCCAGTTTCTGGTTGCCA
CGATCGGCGGAGGCAGCGTCGCCGCGGCGCAAATGGCCCGGCCGCAGCAGCGGTACCGCGGCGTGCGGCAGCGCCACTGG
GGCTCCTGGGTCTCCGAGATCCGC------CACCCTCTCCTGTGCGTACCTACTCCTACCTAGCCCATGCACAGCACG--
--------GTCTGCCTGATCGATGCGCTTACGGTGATTCTT---GGTCGCTCGTGGCTCACGGTGA--------------
--TGACGGTGTGGCGTTGCAG---------GAAGACGCGGATATGGCTGGGCACTTTCGAGACGGCGGAGGACGCGGCGC
GGGCGTACGACGAGGCGG--CAAGGATCATGTGCGGCCAGCGCGC-GCGCACCAACTTCCCCGCCGC-------------
--CACCGGCAGCGTCTCCTCC------TCC------GCGGCCGTGGCGTCCTCGTTCCTCTCCGCCGCCCTCGTCGCGAA
GCTGCACCGGTTCAACATGGCGTCCGTGCAGGCCGCGCAGCGGCAGAGGGAGGCCGCCGCGGCCTCGGCCTCGGCGGCGG
CTGCCACAGCGGCCGCAATGCCGCCGGGCGCCGCCCACGCGGGGCCGACGCTGCCGTCGTCGACGGGGTGGGTCGGGACG
CTCCTCGAG------GAGAAGCACGTGGAGCAGATGATCGCGGAGCTGCTCGACTCCGACTTCTCCATGGAGATCTGCCA
TTAGCCAAGCCAGCCATGGAGC-----GTGCCCTGCTTCCTCTGCCTCTGCATGCTCCTCTCTGTG--TTCTTGGCGCGA
ACGACCGATCACCGGTCACCGCGCGGGTCTAGTGTAGCGTAGCGTAGTGTAGTAGCTGCATATTACAGTCAGTGAGCTAT
GTGATGTGACCACCGGAGAAGAGCTCGTATTAGTTCGGC---CAAGAGTTCTTCTACGCTAGTGATCGTACAGCATAACT
GTACCTCGTATTTAGCATCTATATATCCATTTAGCATCTATATATCCAAAGCCTATACACCCTACGGTAACAAGTTTAAT
CCTCTCTGTGTTTAC---TACCTTTTACGGTGCTCGGCTCAGCTCTGGTTCTAGTCTACGTGCTTTGTGTAGAATTCTTT
TTAGCCAGCCATCTGATCTGCCGCCA------TCGAGAGTCAAGACATC-----AAACATAAAAATAGCACAAGGTAACG
TGCGATGCTTAACTGAAACGAGACCGATCAATGGCGTGCTAACTGCAACGAAACCAATCAATCAGTGGCGTGCTCCAGGA
TTTGCTAGCCGCGTAGGATAATAAACCAGCTAGACGCGCCTGGTTGATGAAGAGCCAACGACACAGGGAAATTCGGTCCA
TGGCCTGTATGGTATGGGGGGAAACTTTGTCGACGATCGAGCCATGTGCGTGCGTACGTAGTCGC---------------
------------------------------GGTACCATCAGATCGTGGGCGCAGCATTTCTTTGTGGTGTGTTTGTTAAC
ATGACTGTGCTGATGCTGCATATCTGGATTGGATTAGCCCCATCATGGCCGGCCACATGACCCTGCCAACTCCGGGCAGC
GCCCACCCTGA---------------------------------------------------------------------
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>chr6D_808
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----------------------------------CCCGCGCCATGGCTCACGCACCGCCGCCAC-------AACGCACT-
------CCCCTCCTGCTCCCGCCAAGCTTTGCTCAGCTGCTCTCCGTTCTCACGGTCTCACGTCACGCCTCCGGCCTCT-
---CCGCGCACAGCAGCAACT---GGAGCACGAAGCAAGCACGAAGACGGAGGCCTGAGCCGGTCAGTTTCCGGTCACCG
TCGGA------------------------CAAATGGCTCGGCCGCAGCAGCGGTACCGCGGCGTGCGGCAGCGCCACTGG
GGCTCGTGGGTCTCCGAGACCCGAATCCAACACCCTCTCCTGTGCGTACCTAC--CTACCTAGCCCATGCACGAGTGCAC
CTTCCTCCATCTGTCT----GATGCGCTTACGGTGATTCTTCTTGGCCGCTCGTGGCTCACGGTGA--------------
--TGACGGTG----GTTGCGGTTGCAGGAAGAAGACGCGGATATGGCTGGGCACATTCGAGACGGCGGACGACGCGGCGC
GGGCGTTACGCGGCGACAAACAAGGATCATGTGCGGCCAGCGCGCCGCGCAGCAACTTCCCCGCTGC-------------
--CAGCG------CCTCTTCCTCCTCTGCTGTTGTGGCGGCCGCCGCGTCGTCGTTCCTCTCCGCCGCCCTCGTCGCGAA
GCTGCACCGGTTCAACATGGCGTCCGTGCAGGCGGCGCAGGGGCAG----------------------------------
---------CAACCGCAATGCCTCCGGGCACCGCCGATTCGACGGCGAGGGT------------GTGGTGGGGCGGGAGG
CTCCTGGAGGAGCACGAGCAGCACGTGGAACAGATGATCGAGGAGCTGCTGGACTCCGACTTCTCCATGGAGATCTGCCA
TTA-----------------------------------------------------------------------------
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>SNPs
SSSSSSSSSSSSS--------S----------------------------------------------------------
-------S------------------------------------------------------------S-SS--------
----------------------------------------------SSSS------------------------------
-------------------------------------------------------------------------------S
----------------------------------------S-S------------------SSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--S----------S----S---SSS
---------S---------S--S---------------------------------------------------------
----------------------------------------S-S------S------SSSSSS------------------
--S-----------------------------------------------------------------S-----------
-----------------------S------SS-------S----------------------------------------
------SSSSSSS----------------S--------------------------------S-----------------
---S-------------------------------------------------------------------------SSS
-SSS-------S---------------------------------------------------------------S----
-----------------------------------------------------------------S--------------
----------------------------------------------------------S---------------------
-----------------------------------S-------------------------------------S----SS
----S--S----S---------S----------------------------S---------S----SSSSSSSSS-----
------------------------------------------S-------------------------------------
------------------------------------------------------------------S------S------
--------------------------------------------------------------------------------
------------------------------------------------------------S-------------------
-S-----S--------------------------------------------------S---------------------
--------------------------------------------------------------------------------
------------------S-----------------------------------------S----S--------------
------------S------------S---S--------------------------------------------------
---------S----------------------S-SSSS-SSS--------------------------------------
----SS---------------------------------------------------------------------S----
---------------SSS--------------------------------------------------------------
-----------------------------S-------------------SSSSS--------------------------
-----------------S---S----------------------------------------------------------
-----------------------------------S-----SSSS-----------------------------------
-----------------------------------------S-SSS--------------------------------S-
------SSSS--------S---S---S-S--SSSS--------S-------------------------------SS---
-------------------------S--SS----------------------------------------S---------
S--SS------S-SSSSSSSSSSSSSS----------------------------S---SS-------------S-----
--S---------------------------------------S-----S--------------S---------------S
SSSSSSSSSSSSSSSSSSS
>forward_453
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---------------------------------CTATGTTTGCCAACCTCGCG---------------------------
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>reverse_2422
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---------------------AACCGATCAATGGCGTGCTA---------------------------------------
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